Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0069 and Sama_0070 are separated by 43 nucleotides Sama_0070 and Sama_0071 are separated by 23 nucleotides Sama_0071 and pbpG are separated by 1 nucleotides
Sama_0069: Sama_0069 - NLP/P60 family lipoprotein (RefSeq), at 76,553 to 76,999
_0069
Sama_0070: Sama_0070 - hypothetical protein (RefSeq), at 77,043 to 77,630
_0070
Sama_0071: Sama_0071 - hypothetical protein (RefSeq), at 77,654 to 77,893
_0071
Sama_0072: pbpG - D-alanyl-D-alanine endopeptidase (RefSeq), at 77,895 to 78,806
pbpG
Position (kb) 77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 76.661 kb on + strand, within Sama_0069 at 76.661 kb on + strand, within Sama_0069 at 76.662 kb on - strand, within Sama_0069 at 76.662 kb on - strand, within Sama_0069 at 76.685 kb on + strand, within Sama_0069 at 76.686 kb on - strand, within Sama_0069 at 76.686 kb on - strand, within Sama_0069 at 76.705 kb on + strand, within Sama_0069 at 76.706 kb on - strand, within Sama_0069 at 76.706 kb on - strand, within Sama_0069 at 76.746 kb on - strand, within Sama_0069 at 76.813 kb on - strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.958 kb on + strand at 76.959 kb on - strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.991 kb on + strand at 76.992 kb on - strand at 76.992 kb on - strand at 76.992 kb on - strand at 77.041 kb on + strand at 77.042 kb on - strand at 77.042 kb on - strand at 77.106 kb on + strand, within Sama_0070 at 77.120 kb on + strand, within Sama_0070 at 77.121 kb on - strand, within Sama_0070 at 77.168 kb on + strand, within Sama_0070 at 77.200 kb on + strand, within Sama_0070 at 77.200 kb on + strand, within Sama_0070 at 77.201 kb on - strand, within Sama_0070 at 77.201 kb on - strand, within Sama_0070 at 77.300 kb on + strand, within Sama_0070 at 77.372 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.456 kb on - strand, within Sama_0070 at 77.456 kb on - strand, within Sama_0070 at 77.505 kb on + strand, within Sama_0070 at 77.506 kb on - strand, within Sama_0070 at 77.506 kb on - strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.556 kb on - strand, within Sama_0070 at 77.556 kb on - strand, within Sama_0070 at 77.622 kb on + strand at 77.622 kb on + strand at 77.622 kb on + strand at 77.622 kb on + strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.655 kb on + strand at 77.655 kb on + strand at 77.656 kb on - strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.674 kb on - strand at 77.674 kb on - strand at 77.674 kb on - strand at 77.797 kb on + strand, within Sama_0071 at 77.797 kb on + strand, within Sama_0071 at 77.797 kb on + strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.817 kb on + strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.852 kb on + strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.872 kb on + strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.890 kb on - strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.907 kb on - strand at 77.907 kb on - strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.910 kb on - strand at 77.910 kb on - strand at 77.933 kb on + strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.935 kb on + strand at 77.936 kb on - strand at 77.936 kb on - strand at 77.936 kb on - strand at 78.123 kb on + strand, within pbpG at 78.169 kb on + strand, within pbpG at 78.170 kb on - strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.240 kb on + strand, within pbpG at 78.247 kb on + strand, within pbpG at 78.248 kb on - strand, within pbpG at 78.290 kb on + strand, within pbpG at 78.303 kb on + strand, within pbpG at 78.344 kb on + strand, within pbpG at 78.391 kb on + strand, within pbpG at 78.392 kb on - strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.618 kb on - strand, within pbpG at 78.638 kb on + strand, within pbpG at 78.638 kb on + strand, within pbpG at 78.646 kb on - strand, within pbpG at 78.646 kb on + strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.688 kb on + strand, within pbpG at 78.688 kb on + strand, within pbpG at 78.688 kb on + strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.784 kb on + strand at 78.784 kb on + strand at 78.785 kb on - strand at 78.785 kb on - strand at 78.822 kb on + strand at 78.822 kb on + strand at 78.823 kb on - strand at 78.823 kb on - strand at 78.856 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.868 kb on - strand at 78.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 76,661 + Sama_0069 0.24 -0.3 76,661 + Sama_0069 0.24 -0.9 76,662 - Sama_0069 0.24 -1.4 76,662 - Sama_0069 0.24 +0.5 76,685 + Sama_0069 0.30 +0.0 76,686 - Sama_0069 0.30 -1.0 76,686 - Sama_0069 0.30 +2.6 76,705 + Sama_0069 0.34 -0.8 76,706 - Sama_0069 0.34 +1.0 76,706 - Sama_0069 0.34 +0.6 76,746 - Sama_0069 0.43 +0.2 76,813 - Sama_0069 0.58 +1.9 76,827 + Sama_0069 0.61 +1.5 76,827 + Sama_0069 0.61 +1.7 76,827 + Sama_0069 0.61 +0.0 76,827 + Sama_0069 0.61 +3.4 76,827 + Sama_0069 0.61 +0.3 76,827 + Sama_0069 0.61 +1.0 76,827 + Sama_0069 0.61 +0.9 76,827 + Sama_0069 0.61 -0.3 76,828 - Sama_0069 0.62 +0.6 76,828 - Sama_0069 0.62 -2.5 76,828 - Sama_0069 0.62 -1.5 76,828 - Sama_0069 0.62 -2.7 76,828 - Sama_0069 0.62 -0.2 76,958 + -0.0 76,959 - -1.4 76,983 + -0.3 76,983 + -1.0 76,983 + +1.0 76,983 + -1.0 76,983 + -1.1 76,983 + +1.4 76,984 - -1.1 76,984 - -2.3 76,984 - +1.9 76,991 + +0.7 76,992 - -1.8 76,992 - -1.0 76,992 - +0.4 77,041 + +1.4 77,042 - -0.8 77,042 - -0.8 77,106 + Sama_0070 0.11 -2.4 77,120 + Sama_0070 0.13 -2.0 77,121 - Sama_0070 0.13 +1.8 77,168 + Sama_0070 0.21 -1.7 77,200 + Sama_0070 0.27 +0.5 77,200 + Sama_0070 0.27 +1.0 77,201 - Sama_0070 0.27 -0.8 77,201 - Sama_0070 0.27 +0.0 77,300 + Sama_0070 0.44 -0.7 77,372 + Sama_0070 0.56 +0.3 77,436 + Sama_0070 0.67 +0.5 77,436 + Sama_0070 0.67 -0.1 77,436 + Sama_0070 0.67 -0.2 77,436 + Sama_0070 0.67 +0.6 77,436 + Sama_0070 0.67 -0.9 77,436 + Sama_0070 0.67 -2.7 77,442 + Sama_0070 0.68 -1.7 77,442 + Sama_0070 0.68 +1.7 77,442 + Sama_0070 0.68 +0.5 77,442 + Sama_0070 0.68 -1.1 77,442 + Sama_0070 0.68 +0.7 77,442 + Sama_0070 0.68 -1.1 77,442 + Sama_0070 0.68 -1.2 77,442 + Sama_0070 0.68 +0.5 77,443 - Sama_0070 0.68 -0.8 77,443 - Sama_0070 0.68 -0.4 77,443 - Sama_0070 0.68 -0.4 77,443 - Sama_0070 0.68 -2.2 77,443 - Sama_0070 0.68 -1.0 77,443 - Sama_0070 0.68 +1.0 77,443 - Sama_0070 0.68 +1.3 77,443 - Sama_0070 0.68 -1.0 77,456 - Sama_0070 0.70 -0.7 77,456 - Sama_0070 0.70 -0.3 77,505 + Sama_0070 0.79 +0.5 77,506 - Sama_0070 0.79 +0.3 77,506 - Sama_0070 0.79 +1.0 77,555 + Sama_0070 0.87 -2.1 77,555 + Sama_0070 0.87 +0.3 77,555 + Sama_0070 0.87 -0.3 77,556 - Sama_0070 0.87 +0.0 77,556 - Sama_0070 0.87 -3.3 77,622 + +0.4 77,622 + +0.9 77,622 + -0.8 77,622 + -0.2 77,623 - -2.3 77,623 - -2.2 77,623 - +0.1 77,623 - -1.1 77,623 - +0.7 77,623 - +2.7 77,655 + -2.3 77,655 + -2.0 77,656 - +1.6 77,673 + -0.4 77,673 + +1.3 77,673 + -2.0 77,673 + -0.4 77,673 + -1.6 77,674 - -1.5 77,674 - +1.0 77,674 - -0.3 77,797 + Sama_0071 0.60 -2.3 77,797 + Sama_0071 0.60 -1.0 77,797 + Sama_0071 0.60 +1.2 77,798 - Sama_0071 0.60 -1.0 77,798 - Sama_0071 0.60 -1.8 77,798 - Sama_0071 0.60 +0.5 77,817 + Sama_0071 0.68 -2.7 77,818 - Sama_0071 0.68 +1.0 77,818 - Sama_0071 0.68 -0.8 77,818 - Sama_0071 0.68 -3.4 77,852 + Sama_0071 0.82 +3.6 77,853 - Sama_0071 0.83 -0.0 77,853 - Sama_0071 0.83 -1.9 77,853 - Sama_0071 0.83 -0.2 77,858 + Sama_0071 0.85 -0.9 77,858 + Sama_0071 0.85 -1.4 77,858 + Sama_0071 0.85 +0.4 77,872 + +0.0 77,873 - -0.3 77,873 - +0.4 77,873 - -1.3 77,890 - +2.6 77,896 + -0.7 77,896 + -1.5 77,896 + -2.7 77,896 + +1.9 77,896 + -0.5 77,896 + -1.3 77,897 - -0.1 77,897 - +0.7 77,897 - -0.8 77,897 - +0.7 77,906 + -1.7 77,906 + -0.8 77,906 + -0.7 77,906 + +0.6 77,906 + -0.5 77,907 - -2.0 77,907 - -0.9 77,909 + +3.3 77,909 + +0.7 77,909 + -0.5 77,909 + -1.0 77,910 - -0.9 77,910 - -0.5 77,933 + -1.2 77,934 - -0.3 77,934 - -0.3 77,934 - -1.1 77,934 - -0.1 77,934 - -1.4 77,934 - -3.0 77,935 + -2.5 77,936 - -0.5 77,936 - +0.8 77,936 - -0.8 78,123 + pbpG Sama_0072 0.25 -0.8 78,169 + pbpG Sama_0072 0.30 -1.4 78,170 - pbpG Sama_0072 0.30 +0.5 78,184 + pbpG Sama_0072 0.32 -0.8 78,184 + pbpG Sama_0072 0.32 -0.1 78,184 + pbpG Sama_0072 0.32 -0.1 78,184 + pbpG Sama_0072 0.32 +3.4 78,185 - pbpG Sama_0072 0.32 -2.3 78,185 - pbpG Sama_0072 0.32 +1.8 78,212 + pbpG Sama_0072 0.35 -0.5 78,212 + pbpG Sama_0072 0.35 +0.1 78,212 + pbpG Sama_0072 0.35 -1.3 78,213 - pbpG Sama_0072 0.35 -0.7 78,213 - pbpG Sama_0072 0.35 -2.7 78,213 - pbpG Sama_0072 0.35 -2.2 78,213 - pbpG Sama_0072 0.35 -1.0 78,213 - pbpG Sama_0072 0.35 +1.7 78,213 - pbpG Sama_0072 0.35 -0.4 78,213 - pbpG Sama_0072 0.35 -1.0 78,213 - pbpG Sama_0072 0.35 +0.4 78,213 - pbpG Sama_0072 0.35 -2.7 78,213 - pbpG Sama_0072 0.35 +1.8 78,240 + pbpG Sama_0072 0.38 -0.5 78,247 + pbpG Sama_0072 0.39 +0.9 78,248 - pbpG Sama_0072 0.39 -0.5 78,290 + pbpG Sama_0072 0.43 -0.1 78,303 + pbpG Sama_0072 0.45 -0.5 78,344 + pbpG Sama_0072 0.49 -2.6 78,391 + pbpG Sama_0072 0.54 -2.1 78,392 - pbpG Sama_0072 0.54 -0.1 78,617 + pbpG Sama_0072 0.79 -1.9 78,617 + pbpG Sama_0072 0.79 -2.6 78,617 + pbpG Sama_0072 0.79 -0.5 78,618 - pbpG Sama_0072 0.79 -1.0 78,638 + pbpG Sama_0072 0.81 +0.6 78,638 + pbpG Sama_0072 0.81 +0.7 78,646 - pbpG Sama_0072 0.82 +1.5 78,646 + pbpG Sama_0072 0.82 -0.3 78,647 - pbpG Sama_0072 0.82 -0.5 78,647 - pbpG Sama_0072 0.82 -1.0 78,647 - pbpG Sama_0072 0.82 -1.3 78,647 - pbpG Sama_0072 0.82 -0.8 78,688 + pbpG Sama_0072 0.87 -2.0 78,688 + pbpG Sama_0072 0.87 -2.7 78,688 + pbpG Sama_0072 0.87 -3.5 78,689 - pbpG Sama_0072 0.87 +0.4 78,689 - pbpG Sama_0072 0.87 -2.0 78,689 - pbpG Sama_0072 0.87 +2.2 78,689 - pbpG Sama_0072 0.87 -1.2 78,689 - pbpG Sama_0072 0.87 -1.0 78,784 + -0.1 78,784 + -0.9 78,785 - +0.9 78,785 - -0.8 78,822 + +2.6 78,822 + -1.7 78,823 - +2.5 78,823 - +0.9 78,856 + -1.8 78,867 + +0.5 78,867 + -0.2 78,867 + +0.8 78,867 + -0.7 78,867 + +0.8 78,868 - +0.9 78,868 - +3.6
Or see this region's nucleotide sequence