Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and Sama_0041 are separated by 17 nucleotides Sama_0041 and Sama_0042 overlap by 1 nucleotides Sama_0042 and def are separated by 15 nucleotides
Sama_0040: trkA - potassium transporter peripheral membrane component (RefSeq), at 43,378 to 44,787
trkA
Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088
_0041
Sama_0042: Sama_0042 - methionyl-tRNA formyltransferase (RefSeq), at 46,088 to 47,050
_0042
Sama_0043: def - peptide deformylase (RefSeq), at 47,066 to 47,569
def
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 44.799 kb on - strand at 44.836 kb on + strand at 44.837 kb on - strand at 44.837 kb on - strand at 44.837 kb on - strand at 44.883 kb on - strand at 44.889 kb on - strand at 44.889 kb on - strand at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.357 kb on + strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.513 kb on + strand, within Sama_0041 at 45.514 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.575 kb on + strand, within Sama_0041 at 45.576 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.676 kb on + strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.725 kb on + strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.855 kb on + strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.952 kb on + strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 46.082 kb on + strand at 46.083 kb on - strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.090 kb on - strand at 46.090 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 44,799 - +0.8 44,836 + +0.5 44,837 - +0.9 44,837 - +2.6 44,837 - -0.3 44,883 - +1.5 44,889 - +2.6 44,889 - -0.5 45,018 - Sama_0041 0.17 +1.2 45,018 - Sama_0041 0.17 +1.5 45,018 - Sama_0041 0.17 +1.2 45,018 - Sama_0041 0.17 +0.7 45,018 - Sama_0041 0.17 -0.3 45,018 - Sama_0041 0.17 -2.1 45,018 - Sama_0041 0.17 +1.9 45,357 + Sama_0041 0.43 +0.7 45,358 - Sama_0041 0.43 +1.5 45,358 - Sama_0041 0.43 +1.6 45,358 - Sama_0041 0.43 -2.3 45,513 + Sama_0041 0.55 +0.5 45,514 - Sama_0041 0.55 -0.1 45,542 - Sama_0041 0.57 -1.3 45,542 - Sama_0041 0.57 -1.0 45,542 - Sama_0041 0.57 +0.8 45,542 - Sama_0041 0.57 +0.8 45,575 + Sama_0041 0.60 +1.6 45,576 - Sama_0041 0.60 +1.6 45,610 - Sama_0041 0.63 -1.0 45,610 - Sama_0041 0.63 -0.4 45,610 - Sama_0041 0.63 +1.0 45,610 - Sama_0041 0.63 -0.4 45,610 - Sama_0041 0.63 -0.3 45,610 - Sama_0041 0.63 -0.6 45,610 - Sama_0041 0.63 +2.8 45,675 - Sama_0041 0.68 -1.0 45,675 - Sama_0041 0.68 +2.7 45,676 + Sama_0041 0.68 -1.3 45,677 - Sama_0041 0.68 +1.8 45,677 - Sama_0041 0.68 -0.8 45,677 - Sama_0041 0.68 -1.0 45,725 + Sama_0041 0.72 +0.6 45,726 - Sama_0041 0.72 +1.3 45,726 - Sama_0041 0.72 -0.5 45,726 - Sama_0041 0.72 -0.3 45,726 - Sama_0041 0.72 +2.1 45,753 + Sama_0041 0.74 +2.7 45,753 + Sama_0041 0.74 +0.0 45,753 + Sama_0041 0.74 -1.3 45,753 + Sama_0041 0.74 -2.2 45,832 + Sama_0041 0.80 -1.0 45,832 + Sama_0041 0.80 +0.0 45,832 + Sama_0041 0.80 -0.1 45,832 + Sama_0041 0.80 +3.8 45,832 + Sama_0041 0.80 +1.8 45,833 - Sama_0041 0.80 -0.3 45,833 - Sama_0041 0.80 +2.3 45,833 - Sama_0041 0.80 +2.4 45,841 + Sama_0041 0.81 -0.6 45,841 + Sama_0041 0.81 -0.8 45,841 + Sama_0041 0.81 +0.7 45,855 + Sama_0041 0.82 -1.8 45,856 - Sama_0041 0.82 +0.1 45,856 - Sama_0041 0.82 -1.0 45,856 - Sama_0041 0.82 -0.9 45,856 - Sama_0041 0.82 +0.7 45,902 + Sama_0041 0.85 +2.0 45,902 + Sama_0041 0.85 +2.5 45,902 + Sama_0041 0.85 +1.6 45,902 + Sama_0041 0.85 -0.8 45,902 + Sama_0041 0.85 -1.1 45,902 + Sama_0041 0.85 +0.3 45,902 + Sama_0041 0.85 -1.3 45,903 - Sama_0041 0.86 +0.2 45,903 - Sama_0041 0.86 +0.8 45,903 - Sama_0041 0.86 +0.2 45,903 - Sama_0041 0.86 +1.6 45,903 - Sama_0041 0.86 -1.5 45,903 - Sama_0041 0.86 +2.7 45,903 - Sama_0041 0.86 +1.2 45,903 - Sama_0041 0.86 -2.0 45,904 + Sama_0041 0.86 -1.0 45,904 + Sama_0041 0.86 +0.0 45,904 + Sama_0041 0.86 +0.1 45,904 + Sama_0041 0.86 +2.4 45,904 + Sama_0041 0.86 +1.5 45,904 + Sama_0041 0.86 +2.1 45,904 + Sama_0041 0.86 -2.1 45,904 + Sama_0041 0.86 -1.4 45,905 - Sama_0041 0.86 +1.2 45,905 - Sama_0041 0.86 +1.8 45,905 - Sama_0041 0.86 +0.5 45,905 - Sama_0041 0.86 +0.9 45,905 - Sama_0041 0.86 +1.5 45,905 - Sama_0041 0.86 +1.3 45,905 - Sama_0041 0.86 -1.9 45,952 + Sama_0041 0.89 -1.8 45,953 - Sama_0041 0.89 +1.0 45,953 - Sama_0041 0.89 +1.5 46,082 + +1.0 46,083 - -0.3 46,089 + +1.8 46,089 + +7.2 46,089 + -0.7 46,090 - +2.4 46,090 - -2.4 47,068 - +0.2 47,068 - +1.7 47,068 - +1.5 47,068 - -1.1 47,068 - +1.3 47,068 - +0.5 47,068 - -0.6
Or see this region's nucleotide sequence