Strain Fitness in Shewanella amazonensis SB2B around Sama_0013

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
9,790	+		Sama_0010	0.82	-1.4
9,791	-		Sama_0010	0.82	-0.5
9,835	+				-0.3
9,835	+				+0.7
9,836	-				-0.5
9,836	-				+0.5
9,836	-				-1.0
9,836	-				-0.5
10,442	+				-2.3
10,443	-				-0.8
10,455	+				-1.0
10,455	+				-1.1
10,455	+				-2.6
10,455	+				-1.9
10,477	+				+0.5
10,478	-				-2.0
10,478	-				-1.5
10,486	+				-2.5
10,487	-				-1.0
10,495	+				-0.1
10,508	+				-0.3
10,522	+				-1.9
10,522	+				-1.6
10,523	-				-0.7
10,529	+				-0.5
10,529	+				-0.8
10,529	+				-1.9
10,536	+				-2.8
10,536	+				-2.3
10,553	-				-1.4
10,553	-				-0.8
10,553	-				-2.0
10,564	-				-1.0
10,575	+				+0.0
10,576	-				-1.5
10,577	+				-1.3
10,577	+				-1.0
10,577	+				-0.5
10,577	+				-0.8
10,577	+				-1.7
10,578	-				-1.2
10,578	-				+0.0
10,578	-				-0.1
10,578	-				+0.9
10,578	-				-0.5
10,578	-				+0.0
10,578	-				-2.0
10,578	-				-0.8
10,578	-				-2.1
10,578	-				+0.7
10,596	+				-1.3
10,597	-				-0.8
10,599	+				+0.0
10,599	+				-1.0
10,599	+				-1.0
10,600	-				-1.8
10,600	-				-1.3
10,631	+				-0.8
10,631	+				-1.4
10,632	-				-2.2
10,663	-				-0.3
10,663	-				-3.2
10,663	-				-2.2
10,663	-				-2.7
10,690	+				+1.5
10,691	-				+0.5
10,691	-				-0.3
10,701	+				+0.6
10,701	+				-1.1
10,701	+				+2.0
10,702	-				-0.5
12,138	+				-0.5
12,138	+				-2.7