Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hsdM-1 and SO0384 are separated by 500 nucleotides SO0384 and SO0386 are separated by 339 nucleotides SO0386 and SO0387 are separated by 107 nucleotides
SO0383: hsdM-1 - type I restriction-modification system, M subunit (NCBI ptt file), at 397,292 to 399,049
hsdM-1
SO0384: SO0384 - hypothetical protein (NCBI ptt file), at 399,550 to 400,200
SO0384
SO0386: SO0386 - DNA-binding protein, putative (NCBI ptt file), at 400,540 to 400,788
SO0386
SO0387: SO0387 - hypothetical protein (NCBI ptt file), at 400,896 to 401,720
SO0387
Position (kb) 399
400
401 Strain fitness (log2 ratio) -1
0
1 at 398.559 kb on - strand, within hsdM-1 at 398.568 kb on + strand, within hsdM-1 at 398.568 kb on + strand, within hsdM-1 at 398.576 kb on - strand, within hsdM-1 at 398.576 kb on - strand, within hsdM-1 at 398.576 kb on - strand, within hsdM-1 at 398.609 kb on + strand, within hsdM-1 at 398.686 kb on - strand, within hsdM-1 at 398.718 kb on - strand, within hsdM-1 at 398.743 kb on + strand, within hsdM-1 at 398.763 kb on + strand, within hsdM-1 at 398.771 kb on - strand, within hsdM-1 at 398.778 kb on - strand, within hsdM-1 at 398.813 kb on - strand, within hsdM-1 at 398.845 kb on + strand, within hsdM-1 at 398.893 kb on - strand at 398.914 kb on - strand at 398.919 kb on + strand at 399.042 kb on - strand at 399.147 kb on + strand at 399.155 kb on - strand at 399.158 kb on - strand at 399.191 kb on - strand at 399.203 kb on + strand at 399.223 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.461 kb on - strand at 399.461 kb on - strand at 399.463 kb on + strand at 399.468 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.496 kb on - strand at 399.496 kb on - strand at 399.496 kb on - strand at 399.496 kb on - strand at 399.600 kb on + strand at 399.656 kb on + strand, within SO0384 at 399.656 kb on + strand, within SO0384 at 399.657 kb on + strand, within SO0384 at 399.657 kb on - strand, within SO0384 at 399.664 kb on - strand, within SO0384 at 399.664 kb on - strand, within SO0384 at 399.664 kb on - strand, within SO0384 at 399.665 kb on - strand, within SO0384 at 399.705 kb on + strand, within SO0384 at 399.747 kb on + strand, within SO0384 at 399.755 kb on - strand, within SO0384 at 399.775 kb on - strand, within SO0384 at 399.795 kb on - strand, within SO0384 at 399.802 kb on + strand, within SO0384 at 399.810 kb on - strand, within SO0384 at 399.865 kb on - strand, within SO0384 at 399.889 kb on + strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.938 kb on + strand, within SO0384 at 399.938 kb on + strand, within SO0384 at 399.985 kb on + strand, within SO0384 at 399.985 kb on + strand, within SO0384 at 399.993 kb on - strand, within SO0384 at 399.993 kb on - strand, within SO0384 at 400.003 kb on - strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.059 kb on - strand, within SO0384 at 400.142 kb on + strand at 400.142 kb on + strand at 400.150 kb on - strand at 400.175 kb on - strand at 400.175 kb on - strand at 400.218 kb on - strand at 400.218 kb on - strand at 400.257 kb on + strand at 400.257 kb on + strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.267 kb on - strand at 400.291 kb on + strand at 400.291 kb on + strand at 400.299 kb on - strand at 400.309 kb on + strand at 400.315 kb on + strand at 400.359 kb on + strand at 400.372 kb on - strand at 400.431 kb on + strand at 400.434 kb on + strand at 400.434 kb on + strand at 400.442 kb on - strand at 400.444 kb on - strand at 400.555 kb on - strand at 400.596 kb on + strand, within SO0386 at 400.602 kb on - strand, within SO0386 at 400.612 kb on - strand, within SO0386 at 400.614 kb on + strand, within SO0386 at 400.622 kb on - strand, within SO0386 at 400.645 kb on - strand, within SO0386 at 400.679 kb on - strand, within SO0386 at 400.687 kb on + strand, within SO0386 at 400.694 kb on + strand, within SO0386 at 400.745 kb on + strand, within SO0386 at 400.810 kb on + strand at 400.810 kb on - strand at 400.817 kb on + strand at 400.825 kb on - strand at 400.885 kb on + strand at 400.907 kb on + strand at 400.959 kb on + strand at 401.008 kb on - strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.039 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.126 kb on + strand, within SO0387 at 401.128 kb on - strand, within SO0387 at 401.147 kb on + strand, within SO0387 at 401.155 kb on - strand, within SO0387 at 401.159 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 398,559 - hsdM-1 SO0383 0.72 +1.1 398,568 + hsdM-1 SO0383 0.73 -0.0 398,568 + hsdM-1 SO0383 0.73 -0.5 398,576 - hsdM-1 SO0383 0.73 -0.2 398,576 - hsdM-1 SO0383 0.73 +1.6 398,576 - hsdM-1 SO0383 0.73 +0.3 398,609 + hsdM-1 SO0383 0.75 +0.1 398,686 - hsdM-1 SO0383 0.79 +0.2 398,718 - hsdM-1 SO0383 0.81 +0.7 398,743 + hsdM-1 SO0383 0.83 +0.7 398,763 + hsdM-1 SO0383 0.84 +0.4 398,771 - hsdM-1 SO0383 0.84 +1.4 398,778 - hsdM-1 SO0383 0.85 +0.5 398,813 - hsdM-1 SO0383 0.87 -0.3 398,845 + hsdM-1 SO0383 0.88 -0.6 398,893 - -0.3 398,914 - +0.5 398,919 + +0.4 399,042 - +0.2 399,147 + -1.0 399,155 - +1.1 399,158 - +0.3 399,191 - +0.2 399,203 + +0.3 399,223 + +0.2 399,453 + +0.1 399,453 + +0.5 399,453 + +0.2 399,453 + +0.1 399,453 + -0.8 399,461 - +0.4 399,461 - -0.3 399,463 + +0.0 399,468 + -0.5 399,488 + -0.1 399,488 + -0.1 399,488 + +1.0 399,488 + -0.0 399,488 + -0.1 399,488 + +0.1 399,488 + +0.2 399,488 + -0.2 399,488 + -0.5 399,488 + +0.5 399,488 + -0.1 399,488 + +1.7 399,496 - +0.1 399,496 - +0.1 399,496 - -0.5 399,496 - -0.7 399,600 + -0.1 399,656 + SO0384 0.16 -0.4 399,656 + SO0384 0.16 -1.2 399,657 + SO0384 0.16 -1.3 399,657 - SO0384 0.16 +0.1 399,664 - SO0384 0.18 +0.3 399,664 - SO0384 0.18 -0.2 399,664 - SO0384 0.18 -0.3 399,665 - SO0384 0.18 -0.5 399,705 + SO0384 0.24 +0.0 399,747 + SO0384 0.30 +0.1 399,755 - SO0384 0.31 +0.2 399,775 - SO0384 0.35 -1.3 399,795 - SO0384 0.38 +0.2 399,802 + SO0384 0.39 -1.1 399,810 - SO0384 0.40 -0.0 399,865 - SO0384 0.48 +0.8 399,889 + SO0384 0.52 -0.4 399,930 - SO0384 0.58 -0.8 399,930 - SO0384 0.58 +0.6 399,930 - SO0384 0.58 -0.6 399,938 + SO0384 0.60 -0.2 399,938 + SO0384 0.60 -0.5 399,985 + SO0384 0.67 +1.7 399,985 + SO0384 0.67 +0.0 399,993 - SO0384 0.68 -0.0 399,993 - SO0384 0.68 -0.3 400,003 - SO0384 0.70 -0.1 400,044 + SO0384 0.76 -0.6 400,044 + SO0384 0.76 +0.2 400,044 + SO0384 0.76 +0.3 400,044 + SO0384 0.76 -0.1 400,052 - SO0384 0.77 -0.0 400,052 - SO0384 0.77 -1.0 400,052 - SO0384 0.77 -0.3 400,052 - SO0384 0.77 +0.2 400,052 - SO0384 0.77 +1.1 400,059 - SO0384 0.78 -1.0 400,142 + +0.3 400,142 + -0.0 400,150 - -0.1 400,175 - -0.5 400,175 - +0.5 400,218 - -0.1 400,218 - +1.6 400,257 + +0.1 400,257 + +0.2 400,265 - +0.3 400,265 - +0.5 400,265 - -0.3 400,265 - +0.6 400,265 - +0.6 400,267 - +0.1 400,291 + +0.0 400,291 + +0.2 400,299 - +0.4 400,309 + -0.1 400,315 + -0.6 400,359 + +1.0 400,372 - -0.1 400,431 + +0.1 400,434 + -0.0 400,434 + -0.6 400,442 - -0.3 400,444 - -0.3 400,555 - +0.5 400,596 + SO0386 0.22 -0.2 400,602 - SO0386 0.25 +0.6 400,612 - SO0386 0.29 -0.3 400,614 + SO0386 0.30 -0.4 400,622 - SO0386 0.33 -0.5 400,645 - SO0386 0.42 +0.0 400,679 - SO0386 0.56 +0.5 400,687 + SO0386 0.59 +0.3 400,694 + SO0386 0.62 -0.1 400,745 + SO0386 0.82 -0.2 400,810 + +0.2 400,810 - +0.8 400,817 + -0.6 400,825 - -0.0 400,885 + +0.7 400,907 + -0.3 400,959 + +0.1 401,008 - SO0387 0.14 -0.2 401,021 + SO0387 0.15 +0.6 401,021 + SO0387 0.15 -0.7 401,039 + SO0387 0.17 +0.0 401,050 + SO0387 0.19 +0.3 401,050 + SO0387 0.19 +0.3 401,126 + SO0387 0.28 +0.4 401,128 - SO0387 0.28 -0.4 401,147 + SO0387 0.30 -0.8 401,155 - SO0387 0.31 +0.2 401,159 + SO0387 0.32 +0.7 401,165 + SO0387 0.33 +0.0 401,165 + SO0387 0.33 +0.1 401,173 - SO0387 0.34 +0.4 401,173 - SO0387 0.34 +0.6 401,173 - SO0387 0.34 +1.3 401,173 - SO0387 0.34 +0.2 401,173 - SO0387 0.34 +0.5 401,173 - SO0387 0.34 -0.1 401,173 - SO0387 0.34 +0.8
Or see this region's nucleotide sequence