Strain Fitness in Shewanella amazonensis SB2B around Sama_3427

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
4,056,158	+		Sama_3426	0.16	-1.9
4,056,159	-		Sama_3426	0.16	-0.8
4,056,170	+		Sama_3426	0.17	-1.9
4,056,171	-		Sama_3426	0.17	-2.1
4,056,171	-		Sama_3426	0.17	-2.5
4,056,186	-		Sama_3426	0.18	-0.1
4,056,447	-		Sama_3426	0.43	-1.1
4,056,447	-		Sama_3426	0.43	+0.1
4,056,655	+		Sama_3426	0.63	-1.1
4,056,656	-		Sama_3426	0.63	-0.1
4,056,677	+		Sama_3426	0.65	-2.1
4,056,677	+		Sama_3426	0.65	-0.8
4,056,677	+		Sama_3426	0.65	-1.7
4,056,678	-		Sama_3426	0.65	-0.7
4,056,678	-		Sama_3426	0.65	-2.7
4,056,678	-		Sama_3426	0.65	-0.7
4,056,719	+		Sama_3426	0.69	-0.4
4,056,719	+		Sama_3426	0.69	-1.5
4,056,719	+		Sama_3426	0.69	-1.4
4,056,719	+		Sama_3426	0.69	-0.1
4,056,841	-		Sama_3426	0.81	-0.7
4,056,889	+		Sama_3426	0.85	-0.3
4,056,889	+		Sama_3426	0.85	+0.9
4,056,889	+		Sama_3426	0.85	-0.1
4,056,890	-		Sama_3426	0.85	+2.7
4,056,890	-		Sama_3426	0.85	-0.7
4,057,026	+				-0.6
4,057,026	+				-1.7
4,057,026	+				+0.2
4,057,039	+				+0.7
4,057,039	+				+0.3
4,057,040	-				+0.6
4,057,066	-				-2.3
4,057,066	-				-1.4
4,057,066	-				-1.1
4,057,066	-				-3.4
4,057,214	+		Sama_3427	0.11	-1.9
4,057,214	+		Sama_3427	0.11	-0.1
4,057,215	-		Sama_3427	0.11	-1.4
4,057,244	-		Sama_3427	0.13	-2.1
4,057,266	+		Sama_3427	0.15	-1.9
4,057,267	-		Sama_3427	0.15	-2.1
4,057,288	-		Sama_3427	0.16	-2.1
4,057,363	+		Sama_3427	0.21	-1.7
4,057,364	-		Sama_3427	0.22	-0.8
4,057,364	-		Sama_3427	0.22	+0.2
4,057,364	-		Sama_3427	0.22	-1.1
4,057,367	+		Sama_3427	0.22	-1.7
4,057,367	+		Sama_3427	0.22	-0.2
4,057,368	-		Sama_3427	0.22	+0.2
4,057,368	-		Sama_3427	0.22	+0.9
4,057,453	-		Sama_3427	0.28	-1.1
4,057,553	+		Sama_3427	0.35	-1.4
4,057,714	-		Sama_3427	0.46	+0.3
4,057,883	+		Sama_3427	0.58	-1.9
4,057,883	+		Sama_3427	0.58	-0.7
4,057,884	-		Sama_3427	0.58	-1.0
4,057,884	-		Sama_3427	0.58	-0.9
4,057,890	+		Sama_3427	0.59	-1.5
4,057,890	+		Sama_3427	0.59	-1.7
4,057,890	+		Sama_3427	0.59	-1.1
4,057,890	+		Sama_3427	0.59	-0.7
4,058,013	+		Sama_3427	0.67	-2.3
4,058,013	+		Sama_3427	0.67	-1.9
4,058,013	+		Sama_3427	0.67	-1.7
4,058,013	+		Sama_3427	0.67	-1.7
4,058,014	-		Sama_3427	0.68	-0.4
4,058,014	-		Sama_3427	0.68	-0.4
4,058,078	+		Sama_3427	0.72	-1.9
4,058,078	+		Sama_3427	0.72	-0.7
4,058,078	+		Sama_3427	0.72	-0.5
4,058,079	-		Sama_3427	0.72	-0.7
4,058,079	-		Sama_3427	0.72	-1.4
4,058,079	-		Sama_3427	0.72	-1.1
4,058,079	-		Sama_3427	0.72	-1.7
4,058,114	+		Sama_3427	0.75	-0.1
4,058,149	-		Sama_3427	0.77	+0.3
4,058,168	+		Sama_3427	0.78	-1.7
4,058,168	+		Sama_3427	0.78	+0.3
4,058,168	+		Sama_3427	0.78	-1.7
4,058,169	-		Sama_3427	0.78	-1.7
4,058,189	+		Sama_3427	0.80	-1.4
4,058,189	+		Sama_3427	0.80	-0.1
4,058,190	-		Sama_3427	0.80	-0.7
4,058,286	+		Sama_3427	0.87	-1.9
4,058,286	+		Sama_3427	0.87	+0.3
4,058,287	-		Sama_3427	0.87	+0.9
4,058,287	-		Sama_3427	0.87	-1.8
4,058,287	-		Sama_3427	0.87	-2.4
4,058,288	+		Sama_3427	0.87	-1.4
4,058,288	+		Sama_3427	0.87	-2.4
4,058,288	+		Sama_3427	0.87	-0.1
4,058,288	+		Sama_3427	0.87	-0.7
4,058,288	+		Sama_3427	0.87	-0.7
4,058,288	+		Sama_3427	0.87	+0.5
4,058,289	-		Sama_3427	0.87	-2.4
4,058,289	-		Sama_3427	0.87	-2.9
4,058,383	-				-2.7
4,058,383	-				-1.9
4,058,394	+				-0.9
4,058,395	-				-0.7
4,058,431	-				-0.9
4,058,471	-				+1.6
4,058,471	-				-0.0
4,058,566	+				-0.6
4,058,567	-				-0.7
4,058,567	-				+0.1
4,058,567	-				+0.5
4,058,567	-				+0.3
4,058,593	+		Sama_3428	0.10	-2.3
4,058,593	+		Sama_3428	0.10	+0.1
4,058,593	+		Sama_3428	0.10	+0.9
4,058,593	+		Sama_3428	0.10	+0.2
4,058,594	-		Sama_3428	0.10	+0.4
4,058,594	-		Sama_3428	0.10	+0.1
4,058,594	-		Sama_3428	0.10	-1.2
4,058,594	-		Sama_3428	0.10	-1.3
4,058,638	+		Sama_3428	0.18	-0.7
4,058,638	+		Sama_3428	0.18	+0.1
4,058,638	+		Sama_3428	0.18	+0.2
4,058,639	-		Sama_3428	0.18	+0.5
4,058,639	-		Sama_3428	0.18	-0.8
4,058,639	-		Sama_3428	0.18	-0.4
4,058,639	-		Sama_3428	0.18	-0.1
4,058,643	+		Sama_3428	0.19	+0.5
4,058,644	-		Sama_3428	0.19	+0.8
4,058,675	+		Sama_3428	0.25	+0.7
4,058,675	+		Sama_3428	0.25	-0.5
4,058,675	+		Sama_3428	0.25	-0.4
4,058,676	-		Sama_3428	0.25	-0.8
4,058,676	-		Sama_3428	0.25	-0.4
4,058,679	+		Sama_3428	0.26	+0.7
4,058,679	+		Sama_3428	0.26	-0.7
4,058,679	+		Sama_3428	0.26	+0.0
4,058,679	+		Sama_3428	0.26	+1.0
4,058,679	+		Sama_3428	0.26	+0.4
4,058,680	-		Sama_3428	0.26	-0.4
4,058,680	-		Sama_3428	0.26	-2.3
4,058,680	-		Sama_3428	0.26	+0.4
4,058,680	-		Sama_3428	0.26	-0.9
4,058,680	-		Sama_3428	0.26	-0.5
4,058,680	-		Sama_3428	0.26	+0.3
4,058,699	-		Sama_3428	0.29	-0.0
4,058,713	+		Sama_3428	0.32	+0.3
4,058,713	+		Sama_3428	0.32	+0.3
4,058,713	+		Sama_3428	0.32	-0.1
4,058,713	+		Sama_3428	0.32	-0.5
4,058,714	-		Sama_3428	0.32	-0.2
4,058,752	+		Sama_3428	0.39	-0.5
4,058,752	+		Sama_3428	0.39	-1.5
4,058,753	-		Sama_3428	0.39	-0.1
4,058,753	-		Sama_3428	0.39	-1.4
4,058,753	-		Sama_3428	0.39	-2.5
4,058,773	+		Sama_3428	0.43	-0.9
4,058,773	+		Sama_3428	0.43	-1.4
4,058,773	+		Sama_3428	0.43	+1.9
4,058,773	+		Sama_3428	0.43	+1.6
4,058,774	-		Sama_3428	0.43	+0.6
4,058,774	-		Sama_3428	0.43	+0.9
4,058,774	-		Sama_3428	0.43	-0.2
4,058,774	-		Sama_3428	0.43	-0.5
4,058,774	-		Sama_3428	0.43	-0.5
4,058,774	-		Sama_3428	0.43	+0.9
4,058,774	-		Sama_3428	0.43	+0.1
4,058,856	-		Sama_3428	0.58	-0.8
4,058,910	-		Sama_3428	0.68	+0.4
4,058,910	-		Sama_3428	0.68	-2.0
4,058,920	+		Sama_3428	0.70	-0.3
4,058,963	+		Sama_3428	0.78	+1.1
4,059,132	+				-0.1
4,059,133	-				-0.8
4,059,159	-				-0.9
4,059,165	+				-0.7
4,059,165	+				+0.3
4,059,165	+				+0.7
4,059,188	+				+0.4
4,059,188	+				+0.9
4,059,188	+				+0.2
4,059,189	-				+0.6
4,059,189	-				+0.5
4,059,218	-				+0.3
4,059,237	+				+0.2
4,059,237	+				+0.7
4,059,237	+				+0.0
4,059,237	+				-0.9
4,059,238	-				-0.1
4,059,238	-				-0.7
4,059,238	-				-0.2
4,059,269	+				+1.5
4,059,310	-				+0.6
4,059,310	-				+0.5
4,059,329	+				+0.5
4,059,329	+				+2.0
4,059,349	+				-1.3
4,059,403	+		Sama_3429	0.11	+0.9
4,059,403	+		Sama_3429	0.11	-0.5
4,059,403	+		Sama_3429	0.11	-1.8
4,059,403	+		Sama_3429	0.11	-0.1
4,059,404	-		Sama_3429	0.11	+0.1
4,059,404	-		Sama_3429	0.11	-0.1
4,059,404	-		Sama_3429	0.11	-1.4
4,059,404	-		Sama_3429	0.11	-0.4
4,059,404	-		Sama_3429	0.11	-0.7
4,059,404	-		Sama_3429	0.11	-1.2
4,059,404	-		Sama_3429	0.11	+1.6
4,059,404	-		Sama_3429	0.11	+0.9
4,059,407	-		Sama_3429	0.12	-0.3
4,059,407	-		Sama_3429	0.12	+1.3
4,059,407	-		Sama_3429	0.12	+0.3
4,059,407	-		Sama_3429	0.12	+1.8
4,059,460	+		Sama_3429	0.21	-1.3
4,059,460	+		Sama_3429	0.21	+0.2
4,059,460	+		Sama_3429	0.21	-1.1
4,059,461	-		Sama_3429	0.21	-0.8
4,059,461	-		Sama_3429	0.21	-0.2
4,059,461	-		Sama_3429	0.21	+0.3
4,059,461	-		Sama_3429	0.21	-0.3