Strain Fitness in Shewanella amazonensis SB2B around Sama_3168

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,754,712	+		Sama_3166	0.82	+0.7
3,754,713	-		Sama_3166	0.82	-0.3
3,754,718	+		Sama_3166	0.82	-0.3
3,754,719	-		Sama_3166	0.82	-0.1
3,754,719	-		Sama_3166	0.82	+1.2
3,754,722	+		Sama_3166	0.83	-0.3
3,754,722	+		Sama_3166	0.83	-0.3
3,754,722	+		Sama_3166	0.83	-0.6
3,754,722	+		Sama_3166	0.83	-0.3
3,754,722	+		Sama_3166	0.83	+0.0
3,754,722	+		Sama_3166	0.83	+0.2
3,754,723	-		Sama_3166	0.83	-0.4
3,754,723	-		Sama_3166	0.83	-0.7
3,754,723	-		Sama_3166	0.83	+0.3
3,754,723	-		Sama_3166	0.83	+1.3
3,754,723	-		Sama_3166	0.83	+0.7
3,754,723	-		Sama_3166	0.83	+0.2
3,754,723	-		Sama_3166	0.83	-0.3
3,754,723	-		Sama_3166	0.83	-0.1
3,754,723	-		Sama_3166	0.83	-0.6
3,754,723	-		Sama_3166	0.83	-0.3
3,754,780	+		Sama_3166	0.87	+0.7
3,754,838	+				+0.2
3,754,838	+				+1.1
3,754,838	+				-0.6
3,754,839	-				+1.7
3,754,839	-				-0.1
3,754,849	-				-0.3
3,754,873	+				-0.8
3,754,874	-				+1.2
3,754,874	-				-0.3
3,754,874	-				-1.1
3,754,874	-				-0.3
3,754,874	-				-0.2
3,754,926	-				+0.9
3,754,939	-				+2.2
3,754,939	-				-0.0
3,754,941	+				+1.0
3,754,942	-				-0.5
3,754,951	-				+0.6
3,754,951	-				-0.7
3,754,988	+				-0.7
3,754,988	+				+0.5
3,754,988	+				-0.6
3,754,988	+				-0.1
3,754,989	-				-0.3
3,754,989	-				+0.4
3,754,992	+				-1.3
3,754,992	+				+0.8
3,754,993	-				+0.5
3,754,993	-				-0.1
3,754,993	-				+0.6
3,755,041	+				-0.9
3,755,041	+				-0.8
3,755,055	-				-1.6
3,755,107	+				-1.0
3,755,107	+				-0.2
3,755,108	-				-0.3
3,755,108	-				+0.2
3,755,108	-				+0.2
3,755,153	-		Sama_3167	0.14	-0.7
3,755,153	-		Sama_3167	0.14	-0.5
3,755,178	+		Sama_3167	0.19	-0.8
3,755,179	-		Sama_3167	0.19	-1.3
3,755,179	-		Sama_3167	0.19	-0.5
3,755,195	+		Sama_3167	0.22	+0.4
3,755,195	+		Sama_3167	0.22	+0.6
3,755,202	+		Sama_3167	0.23	+0.5
3,755,202	+		Sama_3167	0.23	+0.4
3,755,202	+		Sama_3167	0.23	+1.2
3,755,202	+		Sama_3167	0.23	-0.6
3,755,202	+		Sama_3167	0.23	+0.1
3,755,202	+		Sama_3167	0.23	+0.3
3,755,203	-		Sama_3167	0.23	-0.5
3,755,203	-		Sama_3167	0.23	-0.8
3,755,203	-		Sama_3167	0.23	-0.3
3,755,203	-		Sama_3167	0.23	-0.1
3,755,203	-		Sama_3167	0.23	-0.3
3,755,203	-		Sama_3167	0.23	-0.3
3,755,203	-		Sama_3167	0.23	-0.6
3,755,264	+		Sama_3167	0.34	-0.8
3,755,264	+		Sama_3167	0.34	+0.4
3,755,264	+		Sama_3167	0.34	+1.0
3,755,264	+		Sama_3167	0.34	+0.2
3,755,264	+		Sama_3167	0.34	+0.2
3,755,264	+		Sama_3167	0.34	-0.2
3,755,265	-		Sama_3167	0.34	-0.3
3,755,265	-		Sama_3167	0.34	-1.6
3,755,265	-		Sama_3167	0.34	-0.3
3,755,265	-		Sama_3167	0.34	-0.1
3,755,265	-		Sama_3167	0.34	+1.5
3,755,283	+		Sama_3167	0.38	+0.3
3,755,283	+		Sama_3167	0.38	+0.3
3,755,284	-		Sama_3167	0.38	+0.4
3,755,284	-		Sama_3167	0.38	-1.6
3,755,284	-		Sama_3167	0.38	+0.0
3,755,284	-		Sama_3167	0.38	-0.2
3,755,284	-		Sama_3167	0.38	-2.0
3,755,296	-		Sama_3167	0.40	-1.6
3,755,296	-		Sama_3167	0.40	-0.3
3,755,332	+		Sama_3167	0.46	+0.3
3,755,332	+		Sama_3167	0.46	-0.0
3,755,333	-		Sama_3167	0.47	-0.1
3,755,333	-		Sama_3167	0.47	+0.0
3,755,413	+		Sama_3167	0.61	-0.1
3,755,413	+		Sama_3167	0.61	+0.4
3,755,413	+		Sama_3167	0.61	+0.4
3,755,413	+		Sama_3167	0.61	+1.5
3,755,413	+		Sama_3167	0.61	-1.2
3,755,414	-		Sama_3167	0.61	+1.4
3,755,414	-		Sama_3167	0.61	-2.1
3,755,414	-		Sama_3167	0.61	-0.3
3,755,414	-		Sama_3167	0.61	+1.1
3,755,495	+		Sama_3167	0.76	-1.8
3,755,496	-		Sama_3167	0.76	-0.2
3,755,549	+		Sama_3167	0.86	-1.2
3,755,559	+		Sama_3167	0.87	-0.5
3,755,560	-		Sama_3167	0.88	+0.7
3,755,560	-		Sama_3167	0.88	+1.2
3,755,560	-		Sama_3167	0.88	-0.3
3,755,563	-		Sama_3167	0.88	+0.2
3,755,578	-				+1.2
3,755,578	-				-1.3
3,755,578	-				+0.9
3,755,578	-				+0.6
3,755,578	-				-0.4
3,755,599	+				+0.2
3,755,599	+				+0.2
3,755,599	+				-0.3
3,755,599	+				-0.9
3,755,599	+				-0.4
3,755,600	-				-1.0
3,755,600	-				-0.1
3,755,600	-				-0.3
3,755,600	-				-1.4
3,755,600	-				-0.2
3,755,600	-				-0.5
3,755,628	+				+0.9
3,755,628	+				+0.5
3,755,657	-				-0.8
3,755,672	-				-0.1
3,755,672	-				+0.2
3,755,672	-				-0.6
3,755,685	+				+0.4
3,755,685	+				+0.6
3,755,685	+				-2.4
3,755,685	+				-0.3
3,755,686	-				+1.1
3,755,696	+		Sama_3168	0.13	-0.9
3,755,697	-		Sama_3168	0.13	-0.8
3,755,807	+		Sama_3168	0.68	-0.5
3,755,817	+		Sama_3168	0.73	-1.1
3,755,834	+		Sama_3168	0.82	-0.0
3,755,864	+				+0.4
3,755,914	+				+1.2
3,755,914	+				-1.1
3,755,945	-				-1.6
3,755,967	+				+0.7
3,755,967	+				+0.7
3,755,968	-				-0.1
3,756,017	+				-0.7
3,756,018	-				-0.8
3,756,020	+				+0.9
3,756,020	+				+0.2
3,756,027	+				+0.4
3,756,037	-				+0.3
3,756,044	+				-0.6
3,756,113	+				-0.7
3,756,126	+				+0.2
3,756,126	+				+0.3
3,756,131	+				-0.4
3,756,132	-				+0.3
3,756,139	-				-0.8
3,756,151	+				+1.4
3,756,151	+				-0.3
3,756,151	+				+0.5
3,756,151	+				+0.1
3,756,151	+				+0.3
3,756,151	+				-0.6
3,756,151	+				-0.3
3,756,151	+				+0.5
3,756,151	+				-1.6
3,756,151	+				-1.6
3,756,152	-				-0.0
3,756,152	-				+2.2
3,756,152	-				+0.5
3,756,152	-				-0.5
3,756,152	-				+0.1
3,756,152	-				-0.2
3,756,152	-				-0.7
3,756,152	-				+1.5
3,756,152	-				-0.7
3,756,152	-				-0.2
3,756,205	+				-0.3
3,756,237	+				+0.4
3,756,237	+				-0.3
3,756,237	+				+0.1
3,756,238	-				-0.6
3,756,248	+				+0.3
3,756,248	+				+0.3
3,756,248	+				-2.1
3,756,249	-				-0.5
3,756,249	-				+1.0
3,756,249	-				-1.3
3,756,249	-				-0.3
3,756,262	+				+0.2
3,756,262	+				+0.5
3,756,263	-				-1.0
3,756,263	-				-1.0
3,756,263	-				-0.8
3,756,289	+				-0.8
3,756,324	+	metF	Sama_3169	0.12	-0.8
3,756,324	+	metF	Sama_3169	0.12	-1.2
3,756,325	-	metF	Sama_3169	0.12	+0.2
3,756,325	-	metF	Sama_3169	0.12	-0.8
3,756,325	-	metF	Sama_3169	0.12	-2.1
3,756,335	+	metF	Sama_3169	0.13	-0.4
3,756,372	-	metF	Sama_3169	0.17	+0.4
3,756,372	-	metF	Sama_3169	0.17	-1.6
3,756,372	-	metF	Sama_3169	0.17	+0.9
3,756,422	+	metF	Sama_3169	0.23	-1.2
3,756,422	+	metF	Sama_3169	0.23	-0.2
3,756,422	+	metF	Sama_3169	0.23	-0.2
3,756,423	-	metF	Sama_3169	0.23	-0.3
3,756,423	-	metF	Sama_3169	0.23	-0.0
3,756,423	-	metF	Sama_3169	0.23	-0.8
3,756,437	+	metF	Sama_3169	0.24	-1.3
3,756,437	+	metF	Sama_3169	0.24	+1.4
3,756,437	+	metF	Sama_3169	0.24	+0.1
3,756,438	-	metF	Sama_3169	0.25	+0.6
3,756,438	-	metF	Sama_3169	0.25	-0.7
3,756,438	-	metF	Sama_3169	0.25	-0.2
3,756,438	-	metF	Sama_3169	0.25	-0.0
3,756,438	-	metF	Sama_3169	0.25	+0.3
3,756,461	+	metF	Sama_3169	0.27	+1.6
3,756,462	-	metF	Sama_3169	0.27	-2.4
3,756,506	+	metF	Sama_3169	0.32	+0.5
3,756,506	+	metF	Sama_3169	0.32	+0.6
3,756,506	+	metF	Sama_3169	0.32	+0.3
3,756,506	+	metF	Sama_3169	0.32	+0.1
3,756,506	+	metF	Sama_3169	0.32	-0.7
3,756,507	-	metF	Sama_3169	0.32	-0.2
3,756,507	-	metF	Sama_3169	0.32	+0.7
3,756,541	+	metF	Sama_3169	0.36	+0.3
3,756,541	+	metF	Sama_3169	0.36	+0.0
3,756,541	+	metF	Sama_3169	0.36	-0.1
3,756,541	+	metF	Sama_3169	0.36	+0.6
3,756,542	-	metF	Sama_3169	0.36	+0.8
3,756,542	-	metF	Sama_3169	0.36	+0.2
3,756,549	+	metF	Sama_3169	0.37	-1.1
3,756,549	+	metF	Sama_3169	0.37	-0.1
3,756,549	+	metF	Sama_3169	0.37	-1.3
3,756,550	-	metF	Sama_3169	0.37	-0.0
3,756,550	-	metF	Sama_3169	0.37	+0.1
3,756,550	-	metF	Sama_3169	0.37	-0.6
3,756,672	+	metF	Sama_3169	0.51	-0.8
3,756,673	-	metF	Sama_3169	0.51	-0.8
3,756,674	+	metF	Sama_3169	0.51	-0.1
3,756,674	+	metF	Sama_3169	0.51	+0.7
3,756,674	+	metF	Sama_3169	0.51	+0.4
3,756,674	+	metF	Sama_3169	0.51	+0.4
3,756,675	-	metF	Sama_3169	0.51	+0.7
3,756,675	-	metF	Sama_3169	0.51	+0.0
3,756,773	+	metF	Sama_3169	0.62	-1.0
3,756,773	+	metF	Sama_3169	0.62	-0.5
3,756,773	+	metF	Sama_3169	0.62	+0.1
3,756,774	-	metF	Sama_3169	0.62	-0.5
3,756,796	+	metF	Sama_3169	0.65	-0.1
3,756,797	-	metF	Sama_3169	0.65	+0.7
3,756,845	+	metF	Sama_3169	0.70	-1.4
3,756,845	+	metF	Sama_3169	0.70	-0.5
3,756,846	-	metF	Sama_3169	0.70	+0.6
3,756,846	-	metF	Sama_3169	0.70	-0.2