Strain Fitness in Shewanella amazonensis SB2B around Sama_3067

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,643,097	+		Sama_3065	0.79	+0.3
3,643,098	-		Sama_3065	0.79	-1.3
3,643,115	+		Sama_3065	0.81	-0.0
3,643,122	+		Sama_3065	0.82	+0.4
3,643,122	+		Sama_3065	0.82	+0.1
3,643,122	+		Sama_3065	0.82	-2.3
3,643,123	-		Sama_3065	0.82	+1.9
3,643,131	-		Sama_3065	0.84	+1.0
3,643,177	-		Sama_3065	0.90	+0.3
3,643,239	+				+0.3
3,643,239	+				-0.0
3,643,239	+				-0.7
3,643,240	-				+0.2
3,643,240	-				+0.7
3,643,240	-				-0.2
3,643,240	-				+0.5
3,643,240	-				+1.3
3,643,240	-				+0.1
3,643,240	-				-0.0
3,643,240	-				-0.4
3,643,240	-				+0.3
3,643,240	-				+0.2
3,643,240	-				+0.1
3,643,240	-				-0.0
3,643,241	+				+0.2
3,643,242	-				+0.4
3,643,242	-				-0.6
3,643,242	-				+1.1
3,643,242	-				+0.0
3,643,251	+				-0.6
3,643,251	+				+0.4
3,643,258	+				-1.1
3,643,258	+				-0.1
3,643,282	-				-0.1
3,643,311	+				+0.3
3,643,312	-				+1.7
3,643,341	+				+1.3
3,643,341	+				+0.3
3,643,424	-		Sama_3066	0.12	+0.4
3,643,460	+		Sama_3066	0.17	+0.4
3,643,527	+		Sama_3066	0.26	+0.1
3,643,528	-		Sama_3066	0.26	-0.1
3,643,528	-		Sama_3066	0.26	+1.0
3,643,658	-		Sama_3066	0.44	+0.3
3,643,658	-		Sama_3066	0.44	+0.3
3,643,700	+		Sama_3066	0.50	-1.0
3,643,700	+		Sama_3066	0.50	+0.4
3,643,701	-		Sama_3066	0.50	+0.5
3,643,733	-		Sama_3066	0.54	-2.1
3,643,784	+		Sama_3066	0.61	+0.6
3,643,784	+		Sama_3066	0.61	-0.3
3,643,864	+		Sama_3066	0.72	-0.4
3,643,865	-		Sama_3066	0.73	-0.9
3,643,865	-		Sama_3066	0.73	-1.3
3,643,865	-		Sama_3066	0.73	-1.6
3,643,865	-		Sama_3066	0.73	-1.9
3,644,030	+				-2.3
3,644,031	-				-0.3
3,644,082	+				-0.7
3,644,095	+				+0.1
3,644,104	+				-1.4
3,644,466	+		Sama_3067	0.16	-1.0
3,644,466	+		Sama_3067	0.16	-1.3
3,644,467	-		Sama_3067	0.16	-2.5
3,644,467	-		Sama_3067	0.16	-0.9
3,644,507	-		Sama_3067	0.18	-1.1
3,644,593	+		Sama_3067	0.21	-0.8
3,644,593	+		Sama_3067	0.21	-0.3
3,644,594	-		Sama_3067	0.21	-1.5
3,644,605	+		Sama_3067	0.22	-1.4
3,644,605	+		Sama_3067	0.22	-1.3
3,644,605	+		Sama_3067	0.22	-1.1
3,644,605	+		Sama_3067	0.22	-1.3
3,644,605	+		Sama_3067	0.22	-2.6
3,644,606	-		Sama_3067	0.22	-1.3
3,644,606	-		Sama_3067	0.22	-0.5
3,644,606	-		Sama_3067	0.22	-0.1
3,644,606	-		Sama_3067	0.22	-0.9
3,644,606	-		Sama_3067	0.22	-3.1
3,644,698	-		Sama_3067	0.25	+0.1
3,644,698	-		Sama_3067	0.25	-1.6
3,644,703	+		Sama_3067	0.26	-0.2
3,644,704	-		Sama_3067	0.26	-0.3
3,644,813	-		Sama_3067	0.30	-1.1
3,644,823	+		Sama_3067	0.31	-1.5
3,644,824	-		Sama_3067	0.31	-0.3
3,644,824	-		Sama_3067	0.31	-1.1
3,644,824	-		Sama_3067	0.31	+0.7
3,644,824	-		Sama_3067	0.31	-1.1
3,644,868	+		Sama_3067	0.32	-1.1
3,644,868	+		Sama_3067	0.32	-0.3
3,644,869	-		Sama_3067	0.32	-1.5
3,644,956	-		Sama_3067	0.36	-2.1
3,644,956	-		Sama_3067	0.36	-1.7
3,645,019	+		Sama_3067	0.39	-0.2
3,645,020	-		Sama_3067	0.39	-1.1
3,645,020	-		Sama_3067	0.39	-1.9
3,645,079	+		Sama_3067	0.41	-0.9
3,645,080	-		Sama_3067	0.41	-0.4
3,645,085	+		Sama_3067	0.41	-1.9
3,645,085	+		Sama_3067	0.41	-0.9
3,645,086	-		Sama_3067	0.41	-0.6
3,645,086	-		Sama_3067	0.41	-1.7
3,645,270	+		Sama_3067	0.49	-1.4
3,645,270	+		Sama_3067	0.49	-0.4
3,645,270	+		Sama_3067	0.49	-1.8
3,645,270	+		Sama_3067	0.49	-0.4
3,645,270	+		Sama_3067	0.49	-0.7
3,645,270	+		Sama_3067	0.49	-2.1
3,645,270	+		Sama_3067	0.49	-1.6
3,645,271	-		Sama_3067	0.49	-0.5
3,645,271	-		Sama_3067	0.49	-1.9
3,645,271	-		Sama_3067	0.49	-1.2
3,645,271	-		Sama_3067	0.49	-0.9
3,645,271	-		Sama_3067	0.49	+0.7
3,645,271	-		Sama_3067	0.49	-1.1
3,645,271	-		Sama_3067	0.49	-2.7
3,645,271	-		Sama_3067	0.49	-1.1
3,645,271	-		Sama_3067	0.49	-1.5
3,645,271	-		Sama_3067	0.49	-1.3
3,645,271	-		Sama_3067	0.49	-1.1
3,645,289	+		Sama_3067	0.50	-2.7
3,645,290	-		Sama_3067	0.50	-0.6
3,645,290	-		Sama_3067	0.50	-1.6
3,645,290	-		Sama_3067	0.50	-1.6
3,645,290	-		Sama_3067	0.50	-0.6
3,645,290	-		Sama_3067	0.50	-1.1
3,645,290	-		Sama_3067	0.50	-1.9
3,645,358	+		Sama_3067	0.53	+0.1
3,645,359	-		Sama_3067	0.53	-1.6
3,645,360	+		Sama_3067	0.53	-1.0
3,645,360	+		Sama_3067	0.53	-3.2
3,645,360	+		Sama_3067	0.53	-0.6
3,645,360	+		Sama_3067	0.53	-2.3
3,645,360	+		Sama_3067	0.53	-1.1
3,645,405	+		Sama_3067	0.55	-1.9
3,645,451	+		Sama_3067	0.56	-1.4
3,645,452	-		Sama_3067	0.56	+0.0
3,645,452	-		Sama_3067	0.56	-0.4
3,645,452	-		Sama_3067	0.56	-2.4
3,645,537	+		Sama_3067	0.60	-1.9
3,645,537	+		Sama_3067	0.60	-0.5
3,645,537	+		Sama_3067	0.60	+0.7
3,645,538	-		Sama_3067	0.60	+0.5
3,645,594	+		Sama_3067	0.62	-0.4
3,645,594	+		Sama_3067	0.62	-0.9
3,645,595	-		Sama_3067	0.62	+0.7
3,645,595	-		Sama_3067	0.62	-1.2
3,645,595	-		Sama_3067	0.62	-2.5
3,645,646	+		Sama_3067	0.64	-1.9
3,645,647	-		Sama_3067	0.65	-2.2
3,645,657	+		Sama_3067	0.65	-2.1
3,645,657	+		Sama_3067	0.65	-2.9
3,645,658	-		Sama_3067	0.65	+1.9
3,645,658	-		Sama_3067	0.65	-2.8
3,645,695	+		Sama_3067	0.67	-0.9
3,645,695	+		Sama_3067	0.67	-1.6
3,645,696	-		Sama_3067	0.67	-0.5
3,645,756	+		Sama_3067	0.69	-3.0
3,645,816	+		Sama_3067	0.71	-1.4
3,645,817	-		Sama_3067	0.72	-1.7
3,645,817	-		Sama_3067	0.72	-0.8
3,645,900	+		Sama_3067	0.75	-1.3
3,645,901	-		Sama_3067	0.75	-0.9
3,645,901	-		Sama_3067	0.75	-2.3
3,645,901	-		Sama_3067	0.75	-0.7
3,645,901	-		Sama_3067	0.75	-0.3
3,645,962	-		Sama_3067	0.78	-0.9
3,645,962	-		Sama_3067	0.78	-2.0
3,645,994	+		Sama_3067	0.79	-2.2
3,645,994	+		Sama_3067	0.79	-1.3
3,645,995	-		Sama_3067	0.79	-1.7
3,645,995	-		Sama_3067	0.79	-0.6
3,645,995	-		Sama_3067	0.79	-1.1
3,645,995	-		Sama_3067	0.79	-1.3
3,645,995	-		Sama_3067	0.79	-1.0
3,645,995	-		Sama_3067	0.79	-0.9
3,646,038	+		Sama_3067	0.81	-1.4
3,646,038	+		Sama_3067	0.81	-2.3
3,646,038	+		Sama_3067	0.81	-0.9
3,646,038	+		Sama_3067	0.81	-3.0
3,646,039	-		Sama_3067	0.81	-0.8
3,646,039	-		Sama_3067	0.81	-2.4
3,646,039	-		Sama_3067	0.81	-1.7
3,646,039	-		Sama_3067	0.81	+0.1
3,646,039	-		Sama_3067	0.81	-1.1
3,646,039	-		Sama_3067	0.81	-0.3
3,646,142	-		Sama_3067	0.85	-0.8
3,646,155	+		Sama_3067	0.85	-1.0
3,646,155	+		Sama_3067	0.85	-1.6
3,646,155	+		Sama_3067	0.85	-1.9
3,646,156	-		Sama_3067	0.85	-3.0
3,646,156	-		Sama_3067	0.85	-0.8
3,646,181	-		Sama_3067	0.87	-1.9
3,646,246	+		Sama_3067	0.89	-0.3
3,646,390	+				-2.6
3,646,391	-				-1.5
3,646,438	+				-0.1
3,646,439	-				-2.4
3,646,467	+				-2.0
3,646,501	+				-1.3
3,646,551	+				-0.7
3,646,551	+				+0.3
3,646,552	-				-0.3
3,646,552	-				-0.3
3,646,603	+				-1.3
3,646,603	+				-0.7
3,646,604	-				-0.9
3,646,604	-				+1.0
3,646,604	-				-2.3
3,646,604	-				-0.6
3,646,657	+		Sama_3068	0.18	-1.4
3,646,657	+		Sama_3068	0.18	-0.4
3,646,657	+		Sama_3068	0.18	+0.0
3,646,658	-		Sama_3068	0.18	-0.4
3,646,658	-		Sama_3068	0.18	-0.9
3,646,658	-		Sama_3068	0.18	-0.9
3,646,658	-		Sama_3068	0.18	-0.4
3,646,658	-		Sama_3068	0.18	-1.0
3,646,671	+		Sama_3068	0.20	-2.9
3,646,672	-		Sama_3068	0.20	-0.5
3,646,695	+		Sama_3068	0.24	-2.4
3,646,695	+		Sama_3068	0.24	-2.1
3,646,696	-		Sama_3068	0.24	-2.7
3,646,725	+		Sama_3068	0.29	-1.6
3,646,726	-		Sama_3068	0.29	-1.6
3,646,780	-		Sama_3068	0.38	-1.6
3,646,785	+		Sama_3068	0.39	-2.5
3,646,785	+		Sama_3068	0.39	+0.4
3,646,785	+		Sama_3068	0.39	-3.0
3,646,786	-		Sama_3068	0.39	-0.1
3,646,786	-		Sama_3068	0.39	+0.4
3,646,786	-		Sama_3068	0.39	-0.1
3,646,786	-		Sama_3068	0.39	-0.9
3,646,786	-		Sama_3068	0.39	+0.4
3,646,786	-		Sama_3068	0.39	-1.1
3,646,786	-		Sama_3068	0.39	-0.9
3,646,786	-		Sama_3068	0.39	-0.9
3,646,786	-		Sama_3068	0.39	-1.1
3,646,786	-		Sama_3068	0.39	-0.9
3,646,812	-		Sama_3068	0.43	-0.1
3,646,818	+		Sama_3068	0.44	-1.4
3,646,818	+		Sama_3068	0.44	-1.6
3,646,818	+		Sama_3068	0.44	-1.9
3,646,818	+		Sama_3068	0.44	+0.5
3,646,818	+		Sama_3068	0.44	-0.6
3,646,818	+		Sama_3068	0.44	-3.7
3,646,818	+		Sama_3068	0.44	-2.9
3,646,818	+		Sama_3068	0.44	-1.8
3,646,818	+		Sama_3068	0.44	+0.3
3,646,818	+		Sama_3068	0.44	-0.5
3,646,819	-		Sama_3068	0.44	+0.9
3,646,819	-		Sama_3068	0.44	-1.4
3,646,819	-		Sama_3068	0.44	-1.6
3,646,819	-		Sama_3068	0.44	-0.5
3,646,819	-		Sama_3068	0.44	-1.1
3,646,819	-		Sama_3068	0.44	-0.6
3,646,819	-		Sama_3068	0.44	-1.4
3,646,819	-		Sama_3068	0.44	-0.2
3,646,819	-		Sama_3068	0.44	-0.4
3,646,819	-		Sama_3068	0.44	-2.5
3,646,819	-		Sama_3068	0.44	-0.3
3,646,819	-		Sama_3068	0.44	-0.1
3,646,819	-		Sama_3068	0.44	-0.7
3,646,819	-		Sama_3068	0.44	-0.0
3,646,819	-		Sama_3068	0.44	-3.0
3,646,833	+		Sama_3068	0.47	-0.3
3,646,833	+		Sama_3068	0.47	-1.3
3,646,833	+		Sama_3068	0.47	-0.4
3,646,833	+		Sama_3068	0.47	-2.6
3,646,928	+		Sama_3068	0.62	-2.0
3,646,929	-		Sama_3068	0.62	+0.3
3,646,929	-		Sama_3068	0.62	-0.0
3,646,929	-		Sama_3068	0.62	-0.7
3,646,929	-		Sama_3068	0.62	-0.6
3,646,929	-		Sama_3068	0.62	+1.7
3,646,939	+		Sama_3068	0.64	-2.7
3,646,965	+		Sama_3068	0.68	-2.6
3,646,965	+		Sama_3068	0.68	-3.4
3,647,088	+		Sama_3068	0.88	-1.4
3,647,088	+		Sama_3068	0.88	-1.3
3,647,089	-		Sama_3068	0.88	-1.7
3,647,089	-		Sama_3068	0.88	-0.5
3,647,089	-		Sama_3068	0.88	+1.1
3,647,096	+		Sama_3068	0.89	-0.6
3,647,096	+		Sama_3068	0.89	-0.1
3,647,096	+		Sama_3068	0.89	-1.4
3,647,096	+		Sama_3068	0.89	-1.9
3,647,096	+		Sama_3068	0.89	-1.9
3,647,096	+		Sama_3068	0.89	-1.3
3,647,097	-		Sama_3068	0.89	-0.3
3,647,097	-		Sama_3068	0.89	-0.8
3,647,097	-		Sama_3068	0.89	-1.2
3,647,097	-		Sama_3068	0.89	+0.9
3,647,097	-		Sama_3068	0.89	+0.9
3,647,097	-		Sama_3068	0.89	+0.7
3,647,097	-		Sama_3068	0.89	-0.5
3,647,097	-		Sama_3068	0.89	-0.4
3,647,097	-		Sama_3068	0.89	-0.4
3,647,161	+				-0.7
3,647,161	+				-3.3
3,647,161	+				-2.1
3,647,161	+				-1.9
3,647,162	-				-0.6
3,647,186	+				-1.3
3,647,196	-				-0.5
3,647,204	+				+0.5
3,647,205	-				-0.1
3,647,205	-				+0.3
3,647,205	-				-2.0
3,647,207	-				+0.1
3,647,207	-				+0.4
3,647,207	-				+0.6
3,647,207	-				+0.7
3,647,245	+				-1.0
3,647,246	-				-1.6
3,647,246	-				+0.3
3,647,275	+				-0.6
3,647,276	-				-0.8
3,647,276	-				+0.9
3,647,276	-				-0.0