Strain Fitness in Shewanella amazonensis SB2B around Sama_3000

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,572,559	+		Sama_2998	0.82	-0.3
3,572,559	+		Sama_2998	0.82	-1.0
3,572,559	+		Sama_2998	0.82	+0.3
3,572,560	-		Sama_2998	0.82	-1.3
3,572,560	-		Sama_2998	0.82	-0.3
3,572,560	-		Sama_2998	0.82	+0.1
3,572,560	-		Sama_2998	0.82	+0.7
3,572,563	+		Sama_2998	0.83	-0.5
3,572,564	-		Sama_2998	0.83	+0.1
3,572,564	-		Sama_2998	0.83	+0.1
3,572,564	-		Sama_2998	0.83	-1.9
3,572,775	+				-0.3
3,572,776	-				+0.7
3,572,789	+				+0.1
3,572,789	+				+0.4
3,572,790	-				-0.1
3,572,834	+				-0.1
3,572,834	+				-0.4
3,572,834	+				+0.3
3,572,834	+				+0.3
3,572,835	-				-0.3
3,572,835	-				-0.5
3,572,835	-				+1.2
3,572,838	+				-0.2
3,572,839	-				-0.2
3,572,839	-				+0.2
3,572,839	-				+0.1
3,572,839	-				-0.2
3,572,839	-				-1.1
3,572,867	+				-0.2
3,572,867	+				-1.7
3,572,867	+				+0.9
3,572,868	-				+0.4
3,572,900	+				-1.7
3,572,900	+				+1.7
3,572,933	+		Sama_2999	0.13	+0.7
3,572,933	+		Sama_2999	0.13	+1.5
3,572,948	-		Sama_2999	0.16	+0.7
3,572,969	+		Sama_2999	0.20	-1.4
3,572,969	+		Sama_2999	0.20	-0.0
3,572,969	+		Sama_2999	0.20	+1.0
3,572,969	+		Sama_2999	0.20	+0.6
3,572,969	+		Sama_2999	0.20	-1.6
3,572,970	-		Sama_2999	0.20	-0.3
3,572,970	-		Sama_2999	0.20	-0.3
3,572,970	-		Sama_2999	0.20	+0.2
3,572,970	-		Sama_2999	0.20	-1.0
3,572,970	-		Sama_2999	0.20	+0.6
3,572,970	-		Sama_2999	0.20	-1.5
3,572,970	-		Sama_2999	0.20	+0.6
3,573,079	+		Sama_2999	0.42	-0.1
3,573,156	+		Sama_2999	0.57	-0.8
3,573,274	-		Sama_2999	0.80	+0.0
3,573,274	-		Sama_2999	0.80	+0.5
3,573,274	-		Sama_2999	0.80	+0.4
3,573,308	+		Sama_2999	0.86	+0.5
3,573,309	-		Sama_2999	0.86	-0.7
3,573,372	+				+0.4
3,573,372	+				-0.5
3,573,373	-				-1.5
3,573,373	-				-0.1
3,573,373	-				-0.1
3,573,443	+				+0.1
3,573,443	+				-0.3
3,573,444	-				+1.1
3,573,444	-				+1.1
3,573,498	+				-0.4
3,573,498	+				+0.1
3,573,498	+				-0.3
3,573,498	+				+0.7
3,573,498	+				+0.3
3,573,499	-				-0.6
3,573,499	-				-0.6
3,573,499	-				+0.1
3,573,500	+				-1.0
3,573,500	+				+0.7
3,573,500	+				-0.3
3,573,501	-				+0.2
3,573,501	-				-0.7
3,573,501	-				+0.2
3,573,501	-				+0.4
3,573,513	+				+0.5
3,573,519	+				-0.9
3,573,519	+				-0.0
3,573,520	-				-0.3
3,573,598	+				+0.9
3,573,598	+				-0.2
3,573,598	+				+0.5
3,573,598	+				+0.3
3,573,598	+				-0.9
3,573,598	+				-2.1
3,573,598	+				-1.8
3,573,599	-				-0.4
3,573,599	-				-0.6
3,573,599	-				+0.2
3,573,599	-				-0.2
3,573,599	-				+0.5
3,573,599	-				+0.6
3,573,599	-				-0.1
3,573,599	-				+0.1
3,573,599	-				-0.8
3,573,599	-				+1.1
3,573,784	+		Sama_3000	0.24	+0.5
3,573,784	+		Sama_3000	0.24	+0.6
3,573,784	+		Sama_3000	0.24	+0.3
3,573,784	+		Sama_3000	0.24	-1.2
3,573,784	+		Sama_3000	0.24	+0.1
3,573,784	+		Sama_3000	0.24	-0.8
3,573,784	+		Sama_3000	0.24	+0.7
3,573,784	+		Sama_3000	0.24	-1.8
3,573,785	-		Sama_3000	0.24	-1.1
3,573,785	-		Sama_3000	0.24	-0.2
3,573,785	-		Sama_3000	0.24	-0.3
3,573,785	-		Sama_3000	0.24	-0.3
3,573,785	-		Sama_3000	0.24	-0.9
3,573,785	-		Sama_3000	0.24	-0.9
3,573,785	-		Sama_3000	0.24	-0.5
3,573,785	-		Sama_3000	0.24	-0.3
3,573,852	-		Sama_3000	0.31	-0.3
3,573,871	-		Sama_3000	0.33	+1.5
3,573,871	-		Sama_3000	0.33	-0.3
3,574,010	+		Sama_3000	0.47	+0.3
3,574,098	+		Sama_3000	0.56	+0.7
3,574,098	+		Sama_3000	0.56	-1.6
3,574,098	+		Sama_3000	0.56	-1.1
3,574,098	+		Sama_3000	0.56	-0.0
3,574,099	-		Sama_3000	0.56	-0.6
3,574,099	-		Sama_3000	0.56	-0.1
3,574,099	-		Sama_3000	0.56	-0.8
3,574,099	-		Sama_3000	0.56	-1.5
3,574,099	-		Sama_3000	0.56	-0.3
3,574,107	+		Sama_3000	0.57	-1.0
3,574,107	+		Sama_3000	0.57	-0.2
3,574,107	+		Sama_3000	0.57	-0.4
3,574,107	+		Sama_3000	0.57	+0.5
3,574,107	+		Sama_3000	0.57	-0.3
3,574,107	+		Sama_3000	0.57	-1.2
3,574,108	-		Sama_3000	0.57	+0.4
3,574,108	-		Sama_3000	0.57	+1.1
3,574,108	-		Sama_3000	0.57	-0.1
3,574,215	+		Sama_3000	0.68	+0.7
3,574,215	+		Sama_3000	0.68	-0.2
3,574,216	-		Sama_3000	0.68	-0.6
3,574,273	-		Sama_3000	0.74	-1.4
3,574,273	-		Sama_3000	0.74	-0.2
3,574,273	-		Sama_3000	0.74	-0.3
3,574,273	-		Sama_3000	0.74	+1.4
3,574,273	-		Sama_3000	0.74	+0.1
3,574,273	-		Sama_3000	0.74	+0.9
3,574,275	+		Sama_3000	0.74	-0.6
3,574,275	+		Sama_3000	0.74	-0.2
3,574,275	+		Sama_3000	0.74	-0.1
3,574,275	+		Sama_3000	0.74	-0.7
3,574,275	+		Sama_3000	0.74	-0.2
3,574,275	+		Sama_3000	0.74	+1.1
3,574,276	-		Sama_3000	0.74	+0.1
3,574,276	-		Sama_3000	0.74	-0.4
3,574,276	-		Sama_3000	0.74	-0.6
3,574,276	-		Sama_3000	0.74	-1.0
3,574,276	-		Sama_3000	0.74	+0.7
3,574,276	-		Sama_3000	0.74	+1.0
3,574,276	-		Sama_3000	0.74	-1.5
3,574,276	-		Sama_3000	0.74	+1.3
3,574,276	-		Sama_3000	0.74	+1.0
3,574,310	+		Sama_3000	0.78	+0.0
3,574,310	+		Sama_3000	0.78	-1.7
3,574,310	+		Sama_3000	0.78	-0.2
3,574,310	+		Sama_3000	0.78	+0.9
3,574,310	+		Sama_3000	0.78	-0.0
3,574,310	+		Sama_3000	0.78	-0.6
3,574,310	+		Sama_3000	0.78	-1.4
3,574,310	+		Sama_3000	0.78	-0.4
3,574,310	+		Sama_3000	0.78	-0.9
3,574,310	+		Sama_3000	0.78	+0.5
3,574,311	-		Sama_3000	0.78	+0.7
3,574,311	-		Sama_3000	0.78	-0.1
3,574,330	+		Sama_3000	0.80	-1.5
3,574,330	+		Sama_3000	0.80	+0.5
3,574,355	+		Sama_3000	0.82	-0.8
3,574,355	+		Sama_3000	0.82	+0.2
3,574,355	+		Sama_3000	0.82	-0.6
3,574,356	-		Sama_3000	0.82	-0.4
3,574,407	+		Sama_3000	0.87	+0.5
3,574,407	+		Sama_3000	0.87	+0.5
3,574,408	-		Sama_3000	0.88	-0.1
3,574,443	-				-0.5
3,574,490	+				+0.6
3,574,490	+				+0.8
3,574,491	-				+0.5
3,574,527	+				-0.8
3,574,528	-				+0.5
3,574,528	-				-0.6
3,574,551	+				+1.3
3,574,552	-				-0.1
3,574,561	+				-0.5
3,574,562	-				+0.4
3,574,589	+		Sama_3001	0.20	+0.8
3,574,590	-		Sama_3001	0.20	-0.1
3,574,590	-		Sama_3001	0.20	+0.3
3,574,590	-		Sama_3001	0.20	-0.2
3,574,605	+		Sama_3001	0.26	+0.3
3,574,605	+		Sama_3001	0.26	-0.9
3,574,606	-		Sama_3001	0.27	-1.2
3,574,693	+		Sama_3001	0.61	-0.5
3,574,693	+		Sama_3001	0.61	-0.3
3,574,694	-		Sama_3001	0.62	-0.1
3,574,720	-		Sama_3001	0.72	+0.3
3,574,754	+		Sama_3001	0.85	+0.6
3,574,755	-		Sama_3001	0.86	-1.7
3,574,799	+				+1.0
3,574,800	-				-1.9
3,574,825	+				+0.3
3,574,825	+				+0.6
3,574,826	-				-0.1
3,574,826	-				-0.2
3,574,826	-				-0.6
3,574,827	+				+0.9
3,574,827	+				+0.2
3,574,827	+				+0.0
3,574,827	+				-0.3
3,574,828	-				+0.3
3,574,828	-				+0.3
3,574,828	-				-2.3
3,574,831	+				+0.6
3,574,831	+				+0.4
3,574,832	-				+0.0
3,574,892	+				+0.4
3,574,893	-				+0.1
3,574,960	+				+0.3
3,574,960	+				+0.2
3,574,961	-				+0.6
3,574,961	-				-0.3
3,574,979	-		Sama_3002	0.11	+1.3
3,574,991	+		Sama_3002	0.12	+0.5
3,574,991	+		Sama_3002	0.12	-0.8
3,574,991	+		Sama_3002	0.12	+1.7
3,574,991	+		Sama_3002	0.12	+1.9
3,574,992	-		Sama_3002	0.13	+0.2
3,575,019	-		Sama_3002	0.16	-0.2
3,575,082	-		Sama_3002	0.23	+0.0
3,575,082	-		Sama_3002	0.23	+0.5
3,575,135	+		Sama_3002	0.29	+0.1
3,575,136	-		Sama_3002	0.29	+0.1
3,575,136	-		Sama_3002	0.29	+0.1
3,575,169	-		Sama_3002	0.33	-0.1
3,575,264	+		Sama_3002	0.43	-0.8
3,575,264	+		Sama_3002	0.43	+1.0
3,575,289	+		Sama_3002	0.46	-0.0
3,575,307	+		Sama_3002	0.48	+0.1
3,575,447	+		Sama_3002	0.64	-0.1
3,575,447	+		Sama_3002	0.64	-0.2
3,575,447	+		Sama_3002	0.64	-0.4
3,575,447	+		Sama_3002	0.64	+0.5
3,575,447	+		Sama_3002	0.64	+2.1
3,575,447	+		Sama_3002	0.64	-0.5
3,575,447	+		Sama_3002	0.64	+0.8
3,575,448	-		Sama_3002	0.64	+0.6
3,575,448	-		Sama_3002	0.64	+0.5
3,575,448	-		Sama_3002	0.64	+0.1
3,575,448	-		Sama_3002	0.64	+0.1
3,575,448	-		Sama_3002	0.64	-0.4
3,575,448	-		Sama_3002	0.64	+0.5
3,575,448	-		Sama_3002	0.64	-1.6
3,575,448	-		Sama_3002	0.64	+1.9
3,575,448	-		Sama_3002	0.64	+0.0
3,575,448	-		Sama_3002	0.64	-0.4
3,575,448	-		Sama_3002	0.64	+1.2
3,575,448	-		Sama_3002	0.64	-0.2
3,575,448	-		Sama_3002	0.64	-1.3
3,575,458	+		Sama_3002	0.65	-0.4
3,575,458	+		Sama_3002	0.65	+2.3
3,575,458	+		Sama_3002	0.65	-0.2
3,575,458	+		Sama_3002	0.65	+0.7
3,575,458	+		Sama_3002	0.65	+0.2
3,575,459	-		Sama_3002	0.65	-1.1
3,575,459	-		Sama_3002	0.65	+0.7
3,575,459	-		Sama_3002	0.65	-0.2
3,575,459	-		Sama_3002	0.65	+0.3
3,575,515	+		Sama_3002	0.72	-1.9
3,575,515	+		Sama_3002	0.72	+0.6
3,575,515	+		Sama_3002	0.72	+0.5
3,575,516	-		Sama_3002	0.72	+1.2
3,575,516	-		Sama_3002	0.72	-0.0