Strain Fitness in Shewanella amazonensis SB2B around Sama_2888

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,428,745	+				+0.5
3,428,750	-				-0.7
3,428,763	+				-0.9
3,428,765	+				+0.7
3,428,767	+				-0.7
3,428,783	+				+0.3
3,428,788	+				+0.2
3,428,789	-				+0.3
3,428,852	-				-2.0
3,428,933	+				+0.4
3,428,999	+				+0.2
3,429,044	+				+0.5
3,429,094	+				-0.7
3,429,161	+				-0.3
3,429,162	-				+0.9
3,429,165	+				+1.2
3,429,165	+				+0.3
3,429,166	-				-0.1
3,429,199	-				-0.7
3,429,201	-				-0.8
3,429,243	+				-0.8
3,429,257	-				-1.4
3,429,266	-				-1.0
3,429,266	-				+0.0
3,429,284	+				-0.2
3,429,303	-				+0.8
3,429,344	+				-0.1
3,429,344	+				+0.3
3,429,344	+				+0.1
3,429,344	+				+0.5
3,429,344	+				+0.4
3,429,345	-				+0.1
3,429,400	+				-3.1
3,429,400	+				-0.7
3,429,401	-				+0.7
3,429,401	-				-0.3
3,429,572	-				-1.1
3,429,572	-				-0.2
3,429,580	+				+0.5
3,429,606	-				-0.2
3,429,606	-				+0.4
3,429,629	+				+0.9
3,429,630	-				+0.5
3,429,630	-				+0.1
3,429,630	-				-0.3
3,429,656	+				-1.0
3,429,656	+				-1.2
3,429,657	-				-0.4
3,429,689	+				+0.1
3,429,689	+				+1.4
3,429,689	+				-0.8
3,429,689	+				+0.1
3,429,690	-				-2.1
3,429,690	-				+0.1
3,429,690	-				+0.2
3,429,690	-				-0.5
3,429,690	-				-0.3
3,429,690	-				-0.3
3,429,690	-				-0.8
3,429,690	-				+1.0
3,429,690	-				-0.3
3,429,690	-				-0.1
3,429,690	-				-0.9
3,429,691	+				-0.1
3,429,691	+				-0.4
3,429,691	+				+1.2
3,429,692	-				-0.9
3,429,692	-				-0.3
3,429,692	-				-1.3
3,429,692	-				-0.1
3,429,692	-				-1.5
3,429,702	-				+1.1
3,429,906	-		Sama_2888	0.38	-1.0
3,429,906	-		Sama_2888	0.38	-0.3
3,430,108	+		Sama_2888	0.72	-2.3
3,430,109	-		Sama_2888	0.72	-1.3
3,430,352	+				+0.2
3,430,352	+				-1.6
3,430,385	+				+1.0
3,430,385	+				-0.3
3,430,385	+				-0.8
3,430,385	+				-0.4
3,430,386	-				+1.8
3,430,386	-				-0.7
3,430,386	-				+1.0
3,430,386	-				-0.6
3,430,386	-				-0.0
3,430,401	-				+0.2
3,430,437	-				-0.0
3,430,452	+				+0.1
3,430,504	+		Sama_2889	0.12	-0.7
3,430,504	+		Sama_2889	0.12	+0.8
3,430,583	-		Sama_2889	0.16	+0.3
3,430,601	+		Sama_2889	0.17	+1.5
3,430,601	+		Sama_2889	0.17	-0.9
3,430,601	+		Sama_2889	0.17	+0.2
3,430,601	+		Sama_2889	0.17	+0.8
3,430,602	-		Sama_2889	0.17	+0.7
3,430,603	+		Sama_2889	0.17	-2.9
3,430,604	-		Sama_2889	0.18	+0.4
3,430,625	+		Sama_2889	0.19	-1.1
3,430,626	-		Sama_2889	0.19	+0.7
3,430,626	-		Sama_2889	0.19	-0.2
3,430,626	-		Sama_2889	0.19	-0.1
3,430,626	-		Sama_2889	0.19	-0.1
3,430,630	+		Sama_2889	0.19	+0.3
3,430,630	+		Sama_2889	0.19	-0.7
3,430,630	+		Sama_2889	0.19	+1.7
3,430,630	+		Sama_2889	0.19	+0.6
3,430,631	-		Sama_2889	0.19	-0.3
3,430,631	-		Sama_2889	0.19	-0.8
3,430,631	-		Sama_2889	0.19	+0.0
3,430,732	+		Sama_2889	0.25	-0.8
3,430,732	+		Sama_2889	0.25	+0.7
3,430,732	+		Sama_2889	0.25	+0.3
3,430,733	-		Sama_2889	0.25	+0.4
3,430,733	-		Sama_2889	0.25	+0.8
3,430,733	-		Sama_2889	0.25	+1.1
3,430,755	+		Sama_2889	0.26	+1.0
3,430,755	+		Sama_2889	0.26	-0.2
3,430,756	-		Sama_2889	0.26	+0.1
3,430,819	+		Sama_2889	0.30	+0.1
3,430,820	-		Sama_2889	0.30	+1.0
3,430,853	-		Sama_2889	0.32	-0.8
3,431,011	+		Sama_2889	0.41	+0.0
3,431,012	-		Sama_2889	0.41	+0.7
3,431,072	-		Sama_2889	0.44	+0.3
3,431,072	-		Sama_2889	0.44	-0.2
3,431,113	+		Sama_2889	0.47	-0.1
3,431,113	+		Sama_2889	0.47	+2.2
3,431,113	+		Sama_2889	0.47	-0.2
3,431,114	-		Sama_2889	0.47	+0.8
3,431,114	-		Sama_2889	0.47	+0.4
3,431,114	-		Sama_2889	0.47	+0.1
3,431,114	-		Sama_2889	0.47	+0.6
3,431,186	+		Sama_2889	0.51	-1.7
3,431,187	-		Sama_2889	0.51	-0.7
3,431,187	-		Sama_2889	0.51	-0.2
3,431,232	+		Sama_2889	0.53	-0.8
3,431,233	-		Sama_2889	0.53	-0.1