Strain Fitness in Shewanella amazonensis SB2B around Sama_2813

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,350,229	+		Sama_2811	0.64	-0.2
3,350,229	+		Sama_2811	0.64	-0.8
3,350,229	+		Sama_2811	0.64	+0.4
3,350,229	+		Sama_2811	0.64	-1.4
3,350,229	+		Sama_2811	0.64	+0.2
3,350,229	+		Sama_2811	0.64	-0.1
3,350,229	+		Sama_2811	0.64	+0.2
3,350,229	+		Sama_2811	0.64	+0.6
3,350,230	-		Sama_2811	0.64	+0.0
3,350,230	-		Sama_2811	0.64	-0.2
3,350,230	-		Sama_2811	0.64	+0.3
3,350,230	-		Sama_2811	0.64	-0.8
3,350,230	-		Sama_2811	0.64	+0.2
3,350,230	-		Sama_2811	0.64	+0.1
3,350,230	-		Sama_2811	0.64	-0.1
3,350,230	-		Sama_2811	0.64	+0.0
3,350,230	-		Sama_2811	0.64	-0.3
3,350,230	-		Sama_2811	0.64	+0.5
3,350,230	-		Sama_2811	0.64	-0.2
3,350,230	-		Sama_2811	0.64	-0.5
3,350,230	-		Sama_2811	0.64	+0.1
3,350,230	-		Sama_2811	0.64	-0.6
3,350,362	+		Sama_2811	0.78	-0.1
3,350,362	+		Sama_2811	0.78	+0.1
3,350,363	-		Sama_2811	0.78	-1.4
3,350,366	+		Sama_2811	0.78	+0.3
3,350,366	+		Sama_2811	0.78	+0.4
3,350,366	+		Sama_2811	0.78	-0.1
3,350,366	+		Sama_2811	0.78	+0.2
3,350,366	+		Sama_2811	0.78	+0.3
3,350,366	+		Sama_2811	0.78	+0.1
3,350,366	+		Sama_2811	0.78	+0.3
3,350,367	-		Sama_2811	0.79	+0.0
3,350,367	-		Sama_2811	0.79	-0.6
3,350,382	+		Sama_2811	0.80	-0.7
3,350,382	+		Sama_2811	0.80	-0.7
3,350,383	-		Sama_2811	0.80	+0.4
3,350,383	-		Sama_2811	0.80	+0.2
3,350,416	-		Sama_2811	0.84	-0.7
3,350,425	+		Sama_2811	0.85	+1.0
3,350,457	+		Sama_2811	0.88	-0.9
3,350,458	-		Sama_2811	0.88	+0.3
3,350,554	+				-0.5
3,350,555	-				-2.5
3,350,575	+				-1.2
3,350,575	+				-0.1
3,350,575	+				-0.3
3,350,575	+				+0.4
3,350,575	+				+0.4
3,350,576	-				-0.7
3,350,576	-				-1.2
3,350,576	-				+0.7
3,350,576	-				-0.4
3,350,648	+		Sama_2812	0.12	-0.5
3,350,649	-		Sama_2812	0.12	+0.4
3,350,684	+		Sama_2812	0.18	-0.6
3,350,685	-		Sama_2812	0.18	-0.4
3,350,788	+		Sama_2812	0.35	-1.1
3,350,788	+		Sama_2812	0.35	+0.6
3,350,788	+		Sama_2812	0.35	+0.0
3,350,789	-		Sama_2812	0.35	-0.3
3,350,789	-		Sama_2812	0.35	-0.6
3,350,789	-		Sama_2812	0.35	+1.3
3,350,789	-		Sama_2812	0.35	+0.8
3,350,836	+		Sama_2812	0.42	-0.1
3,350,836	+		Sama_2812	0.42	-1.5
3,350,836	+		Sama_2812	0.42	+0.8
3,350,837	-		Sama_2812	0.43	+0.2
3,350,837	-		Sama_2812	0.43	+0.6
3,350,837	-		Sama_2812	0.43	+0.7
3,350,837	-		Sama_2812	0.43	-0.1
3,350,837	-		Sama_2812	0.43	+0.1
3,350,863	+		Sama_2812	0.47	-1.0
3,350,863	+		Sama_2812	0.47	-0.7
3,350,864	-		Sama_2812	0.47	+0.5
3,350,864	-		Sama_2812	0.47	+0.3
3,350,888	-		Sama_2812	0.51	-1.2
3,350,888	-		Sama_2812	0.51	+0.1
3,350,888	-		Sama_2812	0.51	-0.1
3,350,949	-		Sama_2812	0.61	-1.0
3,350,962	+		Sama_2812	0.63	+0.1
3,350,962	+		Sama_2812	0.63	-0.3
3,350,963	-		Sama_2812	0.63	+2.2
3,350,971	+		Sama_2812	0.64	-0.4
3,350,971	+		Sama_2812	0.64	+0.6
3,350,971	+		Sama_2812	0.64	-0.3
3,350,971	+		Sama_2812	0.64	-0.6
3,350,971	+		Sama_2812	0.64	-0.4
3,350,971	+		Sama_2812	0.64	-0.8
3,350,971	+		Sama_2812	0.64	-0.3
3,350,972	-		Sama_2812	0.64	+0.3
3,350,972	-		Sama_2812	0.64	-0.7
3,350,972	-		Sama_2812	0.64	+0.1
3,350,972	-		Sama_2812	0.64	-1.1
3,350,972	-		Sama_2812	0.64	-2.0
3,350,972	-		Sama_2812	0.64	-1.0
3,350,972	-		Sama_2812	0.64	-0.2
3,350,972	-		Sama_2812	0.64	-0.3
3,350,972	-		Sama_2812	0.64	-0.1
3,350,972	-		Sama_2812	0.64	-0.2
3,350,972	-		Sama_2812	0.64	+0.5
3,350,972	-		Sama_2812	0.64	+0.3
3,350,972	-		Sama_2812	0.64	-0.0
3,350,972	-		Sama_2812	0.64	+0.3
3,350,975	+		Sama_2812	0.65	+0.5
3,350,975	+		Sama_2812	0.65	+0.9
3,350,975	+		Sama_2812	0.65	-0.3
3,350,975	+		Sama_2812	0.65	-0.2
3,350,975	+		Sama_2812	0.65	+0.3
3,350,975	+		Sama_2812	0.65	+0.1
3,350,976	-		Sama_2812	0.65	-1.1
3,350,976	-		Sama_2812	0.65	-1.0
3,350,976	-		Sama_2812	0.65	+1.2
3,350,976	-		Sama_2812	0.65	-1.0
3,351,006	+		Sama_2812	0.70	-0.2
3,351,006	+		Sama_2812	0.70	-0.8
3,351,006	+		Sama_2812	0.70	+0.2
3,351,006	+		Sama_2812	0.70	-0.3
3,351,007	-		Sama_2812	0.70	-1.2
3,351,007	-		Sama_2812	0.70	-0.1
3,351,007	-		Sama_2812	0.70	-0.7
3,351,007	-		Sama_2812	0.70	-0.4
3,351,016	+		Sama_2812	0.72	-0.4
3,351,121	+		Sama_2812	0.89	+0.8
3,351,121	+		Sama_2812	0.89	+0.6
3,351,121	+		Sama_2812	0.89	-0.2
3,351,121	+		Sama_2812	0.89	-0.4
3,351,121	+		Sama_2812	0.89	-0.1
3,351,121	+		Sama_2812	0.89	-1.0
3,351,121	+		Sama_2812	0.89	+0.6
3,351,121	+		Sama_2812	0.89	-2.1
3,351,121	+		Sama_2812	0.89	+0.4
3,351,121	+		Sama_2812	0.89	-0.4
3,351,121	+		Sama_2812	0.89	+1.6
3,351,121	+		Sama_2812	0.89	+0.7
3,351,121	+		Sama_2812	0.89	-0.5
3,351,122	-		Sama_2812	0.89	-0.2
3,351,122	-		Sama_2812	0.89	-0.8
3,351,122	-		Sama_2812	0.89	+0.4
3,351,122	-		Sama_2812	0.89	-0.6
3,351,122	-		Sama_2812	0.89	+0.2
3,351,122	-		Sama_2812	0.89	-0.1
3,351,122	-		Sama_2812	0.89	-0.1
3,351,122	-		Sama_2812	0.89	-0.7
3,351,122	-		Sama_2812	0.89	+0.1
3,351,122	-		Sama_2812	0.89	+0.1
3,351,122	-		Sama_2812	0.89	-0.5
3,351,242	+				-0.4
3,351,299	-	djlA	Sama_2813	0.12	-0.1
3,351,376	-	djlA	Sama_2813	0.22	-1.8
3,351,389	-	djlA	Sama_2813	0.23	-1.2
3,351,389	-	djlA	Sama_2813	0.23	+0.0
3,351,395	-	djlA	Sama_2813	0.24	-0.7
3,351,395	-	djlA	Sama_2813	0.24	+1.6
3,351,404	+	djlA	Sama_2813	0.25	-1.8
3,351,405	-	djlA	Sama_2813	0.26	-1.7
3,351,523	+	djlA	Sama_2813	0.41	-1.4
3,351,574	+	djlA	Sama_2813	0.47	-1.2
3,351,575	-	djlA	Sama_2813	0.48	-0.1
3,351,730	+	djlA	Sama_2813	0.68	+0.0
3,351,730	+	djlA	Sama_2813	0.68	-1.2
3,351,731	-	djlA	Sama_2813	0.68	-1.2
3,351,731	-	djlA	Sama_2813	0.68	-0.2
3,351,731	-	djlA	Sama_2813	0.68	+0.2
3,351,731	-	djlA	Sama_2813	0.68	-1.0
3,351,936	+				+0.2
3,351,936	+				+2.6
3,351,937	-				-1.4
3,351,937	-				+2.2
3,351,937	-				-0.3
3,351,971	+				-2.8
3,351,972	-				-0.5
3,351,972	-				-0.1
3,351,978	+				-0.8
3,351,989	+				+0.5
3,351,990	-				-0.1
3,351,990	-				+0.1
3,351,990	-				+0.2
3,352,005	+				-0.2
3,352,006	-				+0.5
3,352,006	-				-0.5
3,352,006	-				+1.1
3,352,006	-				+0.4
3,352,166	+		Sama_2814	0.26	-2.5
3,352,166	+		Sama_2814	0.26	+0.6
3,352,166	+		Sama_2814	0.26	-0.4
3,352,166	+		Sama_2814	0.26	-0.1
3,352,167	-		Sama_2814	0.26	-0.4
3,352,167	-		Sama_2814	0.26	+1.3
3,352,167	-		Sama_2814	0.26	-0.6
3,352,167	-		Sama_2814	0.26	+0.9
3,352,188	+		Sama_2814	0.29	-1.2
3,352,275	-		Sama_2814	0.42	-1.1
3,352,275	-		Sama_2814	0.42	+0.1
3,352,341	+		Sama_2814	0.52	-1.1
3,352,342	-		Sama_2814	0.52	-0.1
3,352,342	-		Sama_2814	0.52	-1.5
3,352,343	+		Sama_2814	0.52	-1.0
3,352,343	+		Sama_2814	0.52	-0.1
3,352,343	+		Sama_2814	0.52	-2.4
3,352,343	+		Sama_2814	0.52	+1.0
3,352,344	-		Sama_2814	0.52	+1.4
3,352,344	-		Sama_2814	0.52	+0.2
3,352,344	-		Sama_2814	0.52	+1.1
3,352,344	-		Sama_2814	0.52	-0.6
3,352,344	-		Sama_2814	0.52	+0.1
3,352,344	-		Sama_2814	0.52	-1.9
3,352,344	-		Sama_2814	0.52	+0.2
3,352,347	+		Sama_2814	0.53	+0.6
3,352,347	+		Sama_2814	0.53	-1.4
3,352,347	+		Sama_2814	0.53	-0.5
3,352,347	+		Sama_2814	0.53	-0.1
3,352,348	-		Sama_2814	0.53	+0.6
3,352,348	-		Sama_2814	0.53	-1.8
3,352,398	+		Sama_2814	0.60	+0.3
3,352,399	-		Sama_2814	0.60	-1.7
3,352,443	-		Sama_2814	0.67	+0.6
3,352,443	-		Sama_2814	0.67	+0.3
3,352,562	+		Sama_2814	0.84	-1.4
3,352,562	+		Sama_2814	0.84	+0.6
3,352,563	-		Sama_2814	0.84	+0.5
3,352,706	+				-1.2
3,352,707	-				+1.1
3,352,758	-				+0.3
3,352,760	-				+1.0
3,352,760	-				+0.5
3,352,760	-				+1.0
3,352,760	-				+0.2
3,352,760	-				-1.5
3,352,760	-				+1.1
3,352,760	-				+1.4
3,352,760	-				-0.4
3,352,845	-		Sama_2815	0.17	+0.1
3,352,845	-		Sama_2815	0.17	+0.8
3,352,845	-		Sama_2815	0.17	+0.5
3,352,845	-		Sama_2815	0.17	+0.5
3,352,892	+		Sama_2815	0.22	-0.7
3,352,892	+		Sama_2815	0.22	-1.4
3,352,893	-		Sama_2815	0.22	+0.5
3,352,893	-		Sama_2815	0.22	+0.2
3,352,893	-		Sama_2815	0.22	+2.2
3,352,893	-		Sama_2815	0.22	+0.3
3,352,893	-		Sama_2815	0.22	-0.4
3,352,893	-		Sama_2815	0.22	+0.6
3,352,893	-		Sama_2815	0.22	+0.4
3,352,893	-		Sama_2815	0.22	-0.4