Strain Fitness in Shewanella amazonensis SB2B around Sama_2700

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,229,981	+		Sama_2698	0.29	+1.0
3,229,982	-		Sama_2698	0.29	-0.0
3,230,083	+		Sama_2698	0.55	-0.5
3,230,083	+		Sama_2698	0.55	-1.2
3,230,084	-		Sama_2698	0.55	+0.0
3,230,092	+		Sama_2698	0.57	-2.2
3,230,092	+		Sama_2698	0.57	-0.2
3,230,092	+		Sama_2698	0.57	+0.8
3,230,092	+		Sama_2698	0.57	-0.1
3,230,093	-		Sama_2698	0.57	-0.2
3,230,135	+		Sama_2698	0.68	-0.2
3,230,136	-		Sama_2698	0.68	+1.2
3,230,136	-		Sama_2698	0.68	+1.4
3,230,136	-		Sama_2698	0.68	+0.1
3,230,136	-		Sama_2698	0.68	-1.8
3,230,161	-		Sama_2698	0.74	-0.0
3,230,161	-		Sama_2698	0.74	-0.0
3,230,178	+		Sama_2698	0.79	-0.8
3,230,178	+		Sama_2698	0.79	-2.3
3,230,178	+		Sama_2698	0.79	-1.6
3,230,178	+		Sama_2698	0.79	-0.5
3,230,178	+		Sama_2698	0.79	+0.0
3,230,178	+		Sama_2698	0.79	-0.2
3,230,179	-		Sama_2698	0.79	-1.6
3,230,179	-		Sama_2698	0.79	-0.0
3,230,179	-		Sama_2698	0.79	-0.2
3,230,269	+				+2.1
3,230,269	+				+0.1
3,230,269	+				-0.9
3,230,269	+				-0.2
3,230,269	+				+0.9
3,230,269	+				+0.8
3,230,270	-				-0.9
3,230,270	-				-1.2
3,230,290	+				+0.5
3,230,291	-				+0.5
3,230,301	+				-0.9
3,230,301	+				-1.2
3,230,301	+				+0.7
3,230,320	+				+1.1
3,230,392	+		Sama_2699	0.19	-0.4
3,230,392	+		Sama_2699	0.19	-1.6
3,230,392	+		Sama_2699	0.19	+0.5
3,230,416	+		Sama_2699	0.22	-0.5
3,230,416	+		Sama_2699	0.22	-0.5
3,230,417	-		Sama_2699	0.22	-1.2
3,230,521	+		Sama_2699	0.37	-0.1
3,230,522	-		Sama_2699	0.37	+0.4
3,230,522	-		Sama_2699	0.37	-0.0
3,230,522	-		Sama_2699	0.37	-0.5
3,230,533	+		Sama_2699	0.39	-0.6
3,230,533	+		Sama_2699	0.39	+0.3
3,230,533	+		Sama_2699	0.39	-0.9
3,230,543	+		Sama_2699	0.40	-0.2
3,230,562	+		Sama_2699	0.43	-0.2
3,230,562	+		Sama_2699	0.43	+0.5
3,230,562	+		Sama_2699	0.43	-0.8
3,230,563	-		Sama_2699	0.43	+1.0
3,230,563	-		Sama_2699	0.43	-0.4
3,230,563	-		Sama_2699	0.43	-0.7
3,230,563	-		Sama_2699	0.43	+0.5
3,230,563	-		Sama_2699	0.43	-0.8
3,230,563	-		Sama_2699	0.43	-0.2
3,230,563	-		Sama_2699	0.43	+0.5
3,230,563	-		Sama_2699	0.43	-0.7
3,230,564	+		Sama_2699	0.43	+0.1
3,230,564	+		Sama_2699	0.43	+0.1
3,230,564	+		Sama_2699	0.43	+0.4
3,230,564	+		Sama_2699	0.43	-0.2
3,230,564	+		Sama_2699	0.43	+0.9
3,230,565	-		Sama_2699	0.43	+0.5
3,230,565	-		Sama_2699	0.43	-0.6
3,230,594	-		Sama_2699	0.47	-0.3
3,230,618	-		Sama_2699	0.51	-1.2
3,230,759	-		Sama_2699	0.71	-0.5
3,230,794	-		Sama_2699	0.76	-1.6
3,230,866	+		Sama_2699	0.86	+1.3
3,230,870	+		Sama_2699	0.87	+0.1
3,230,906	+				-0.7
3,230,906	+				-0.5
3,230,907	-				-0.9
3,230,910	+				-2.0
3,230,910	+				+0.6
3,230,910	+				-0.5
3,230,910	+				-1.3
3,230,910	+				+0.8
3,230,910	+				-0.5
3,230,910	+				+0.2
3,230,910	+				-0.5
3,230,910	+				-1.1
3,230,911	-				-0.7
3,230,911	-				+0.8
3,230,911	-				+0.0
3,230,911	-				-0.4
3,230,911	-				-0.6
3,230,911	-				-0.5
3,230,911	-				-2.5
3,230,911	-				+0.4
3,230,911	-				-0.2
3,230,911	-				-0.4
3,230,911	-				+0.5
3,230,911	-				-0.8
3,230,911	-				-1.0
3,230,911	-				-0.2
3,230,912	+				-0.2
3,230,912	+				+0.4
3,230,912	+				-0.5
3,230,912	+				-0.5
3,230,912	+				+1.9
3,230,912	+				-0.8
3,230,912	+				+0.0
3,230,912	+				+0.3
3,230,913	-				-0.7
3,230,913	-				+1.0
3,230,913	-				+0.2
3,230,913	-				+0.5
3,230,913	-				-0.1
3,230,913	-				-0.5
3,230,931	+				-0.5
3,230,932	-				-0.6
3,230,932	-				+0.5
3,230,932	-				-0.5
3,230,932	-				-0.7
3,230,932	-				-0.4
3,230,978	+				+0.1
3,230,978	+				-0.5
3,230,982	-				+0.3
3,230,982	-				-0.2
3,230,982	-				-0.3
3,231,014	-				-0.3
3,231,020	-				+0.4
3,231,029	+				+0.2
3,231,044	+				-0.7
3,231,045	-				-1.1
3,231,080	+				+1.3
3,231,081	-		Sama_2700	0.10	-1.2
3,231,081	-		Sama_2700	0.10	+0.9
3,231,104	+		Sama_2700	0.12	+0.2
3,231,105	-		Sama_2700	0.12	+0.3
3,231,105	-		Sama_2700	0.12	-2.0
3,231,105	-		Sama_2700	0.12	-0.3
3,231,226	-		Sama_2700	0.22	+0.7
3,231,226	-		Sama_2700	0.22	-0.2
3,231,257	+		Sama_2700	0.24	-0.5
3,231,257	+		Sama_2700	0.24	-1.1
3,231,258	-		Sama_2700	0.24	+1.2
3,231,258	-		Sama_2700	0.24	-0.7
3,231,258	-		Sama_2700	0.24	-0.1
3,231,258	-		Sama_2700	0.24	-1.2
3,231,260	+		Sama_2700	0.24	+0.4
3,231,285	+		Sama_2700	0.26	-0.4
3,231,286	-		Sama_2700	0.27	+0.4
3,231,286	-		Sama_2700	0.27	+0.5
3,231,286	-		Sama_2700	0.27	+0.8
3,231,329	+		Sama_2700	0.30	-1.2
3,231,329	+		Sama_2700	0.30	+0.5
3,231,329	+		Sama_2700	0.30	+0.1
3,231,329	+		Sama_2700	0.30	-0.3
3,231,330	-		Sama_2700	0.30	+0.5
3,231,344	+		Sama_2700	0.31	+0.7
3,231,345	-		Sama_2700	0.31	-0.0
3,231,345	-		Sama_2700	0.31	-0.6
3,231,345	-		Sama_2700	0.31	-0.5
3,231,348	+		Sama_2700	0.32	+1.0
3,231,348	+		Sama_2700	0.32	+0.5
3,231,348	+		Sama_2700	0.32	-0.0
3,231,348	+		Sama_2700	0.32	-0.3
3,231,349	-		Sama_2700	0.32	+1.5
3,231,401	+		Sama_2700	0.36	+1.1
3,231,401	+		Sama_2700	0.36	-0.0
3,231,401	+		Sama_2700	0.36	-0.4
3,231,401	+		Sama_2700	0.36	-0.3
3,231,401	+		Sama_2700	0.36	-2.9
3,231,401	+		Sama_2700	0.36	-3.2
3,231,401	+		Sama_2700	0.36	-1.0
3,231,401	+		Sama_2700	0.36	-1.2
3,231,401	+		Sama_2700	0.36	-0.5
3,231,402	-		Sama_2700	0.36	-0.5
3,231,402	-		Sama_2700	0.36	+1.0
3,231,433	+		Sama_2700	0.38	-1.8
3,231,433	+		Sama_2700	0.38	-0.9
3,231,559	+		Sama_2700	0.49	+1.4
3,231,679	+		Sama_2700	0.58	+0.2
3,231,679	+		Sama_2700	0.58	-2.2
3,231,679	+		Sama_2700	0.58	-1.5
3,231,679	+		Sama_2700	0.58	-2.0
3,231,679	+		Sama_2700	0.58	-0.3
3,231,680	-		Sama_2700	0.58	-1.0
3,231,680	-		Sama_2700	0.58	+0.1
3,231,680	-		Sama_2700	0.58	-0.8
3,231,680	-		Sama_2700	0.58	-0.7
3,231,680	-		Sama_2700	0.58	-0.5
3,231,680	-		Sama_2700	0.58	-0.8
3,231,680	-		Sama_2700	0.58	-0.5
3,231,695	+		Sama_2700	0.60	+0.1
3,231,695	+		Sama_2700	0.60	-0.3
3,231,695	+		Sama_2700	0.60	+2.5
3,231,696	-		Sama_2700	0.60	-0.6
3,231,723	+		Sama_2700	0.62	+0.4
3,231,723	+		Sama_2700	0.62	+0.4
3,231,723	+		Sama_2700	0.62	-0.9
3,231,724	-		Sama_2700	0.62	-1.0
3,231,724	-		Sama_2700	0.62	-0.7
3,231,756	+		Sama_2700	0.64	+0.3
3,231,776	+		Sama_2700	0.66	-0.6
3,231,776	+		Sama_2700	0.66	+0.3
3,231,776	+		Sama_2700	0.66	+0.4
3,231,777	-		Sama_2700	0.66	-0.5
3,231,777	-		Sama_2700	0.66	-0.2
3,231,777	-		Sama_2700	0.66	-0.6
3,231,787	-		Sama_2700	0.67	+0.7
3,231,797	+		Sama_2700	0.68	-0.7
3,231,798	-		Sama_2700	0.68	-0.4
3,231,798	-		Sama_2700	0.68	-1.0
3,231,798	-		Sama_2700	0.68	-2.0
3,231,798	-		Sama_2700	0.68	-0.4
3,231,811	+		Sama_2700	0.69	+0.0
3,231,811	+		Sama_2700	0.69	-0.0
3,231,811	+		Sama_2700	0.69	-0.6
3,231,811	+		Sama_2700	0.69	-1.3
3,231,812	-		Sama_2700	0.69	-0.1
3,231,812	-		Sama_2700	0.69	-0.5
3,231,812	-		Sama_2700	0.69	-0.5
3,231,812	-		Sama_2700	0.69	-0.7
3,231,832	+		Sama_2700	0.71	-2.0
3,231,875	-		Sama_2700	0.74	-0.3
3,231,888	+		Sama_2700	0.75	-0.1
3,231,905	+		Sama_2700	0.77	+1.0
3,231,905	+		Sama_2700	0.77	+2.0
3,231,905	+		Sama_2700	0.77	-0.3
3,231,905	+		Sama_2700	0.77	+1.7
3,231,906	-		Sama_2700	0.77	+0.7
3,231,906	-		Sama_2700	0.77	-3.7
3,231,906	-		Sama_2700	0.77	-0.7
3,231,906	-		Sama_2700	0.77	-0.2
3,231,966	+		Sama_2700	0.81	+0.4
3,231,966	+		Sama_2700	0.81	-0.5
3,231,967	-		Sama_2700	0.82	+0.1
3,231,967	-		Sama_2700	0.82	+0.5
3,232,022	+		Sama_2700	0.86	+0.0
3,232,023	-		Sama_2700	0.86	+0.0
3,232,023	-		Sama_2700	0.86	-0.8
3,232,023	-		Sama_2700	0.86	+0.3
3,232,023	-		Sama_2700	0.86	+0.5
3,232,023	-		Sama_2700	0.86	+0.1
3,232,023	-		Sama_2700	0.86	-0.6
3,232,058	+		Sama_2700	0.89	-0.5
3,232,058	+		Sama_2700	0.89	+1.0
3,232,108	+				+0.2
3,232,108	+				-0.3
3,232,109	-				-0.0
3,232,193	+				-2.0
3,232,194	-				-1.5
3,232,194	-				+0.3
3,232,194	-				-1.0
3,232,200	+				+0.0
3,232,200	+				-0.5
3,232,200	+				+0.3
3,232,200	+				+0.5
3,232,200	+				-3.5
3,232,201	-				-0.8
3,232,201	-				-0.5
3,232,201	-				+0.5
3,232,201	-				+0.1
3,232,249	-				-0.4
3,232,276	+				+0.7
3,232,281	+				+0.3
3,232,282	-				+0.1
3,232,282	-				+1.3
3,232,282	-				+0.2
3,232,282	-				-1.5
3,232,282	-				-0.2
3,232,282	-				-0.0
3,232,312	+				+0.6
3,232,312	+				-0.0
3,232,312	+				+0.5
3,232,313	-				-0.7
3,232,313	-				-0.8
3,232,313	-				-0.1
3,232,350	+				+0.5
3,232,351	-				+0.1
3,232,351	-				-0.8
3,232,360	-				+0.3
3,232,360	-				+0.9
3,232,419	+		Sama_2701	0.19	+1.2
3,232,420	-		Sama_2701	0.19	-2.0
3,232,514	+		Sama_2701	0.36	+0.5
3,232,514	+		Sama_2701	0.36	-0.8
3,232,515	-		Sama_2701	0.36	-0.4
3,232,515	-		Sama_2701	0.36	-0.3
3,232,555	+		Sama_2701	0.43	-0.0
3,232,555	+		Sama_2701	0.43	+1.0
3,232,556	-		Sama_2701	0.43	+0.7
3,232,686	-		Sama_2701	0.66	+1.2
3,232,686	-		Sama_2701	0.66	+0.3
3,232,724	+		Sama_2701	0.73	+0.7
3,232,725	-		Sama_2701	0.73	+0.3
3,232,727	-		Sama_2701	0.73	-0.2
3,232,727	-		Sama_2701	0.73	+0.5
3,232,800	-		Sama_2701	0.86	-0.3
3,232,802	+		Sama_2701	0.87	-0.5
3,232,864	-				+0.5
3,232,864	-				-0.2
3,232,874	+				+0.3
3,232,883	+				-0.1
3,232,883	+				-0.0
3,232,883	+				+0.5
3,232,883	+				-1.3
3,232,883	+				-0.0
3,232,883	+				-0.3
3,232,884	-				-0.4
3,232,884	-				+0.2
3,232,900	+				+0.2
3,232,900	+				-0.5
3,232,901	-				-0.5
3,232,938	-				-0.3
3,232,967	+				+1.5
3,232,967	+				-0.0
3,232,967	+				-0.0
3,232,968	-				-0.1
3,232,968	-				-0.1
3,232,968	-				-0.2
3,232,968	-				-0.2
3,232,969	+				-1.2
3,232,970	-				-0.9
3,232,985	-				-0.3
3,233,013	-				-0.6
3,233,020	+				+0.3
3,233,021	-				-0.3
3,233,043	+				+0.3
3,233,043	+				-0.0
3,233,044	-				+0.7
3,233,044	-				+0.6
3,233,069	-				-0.3
3,233,069	-				+0.7
3,233,069	-				+0.6
3,233,078	-				+0.4
3,233,078	-				-0.2
3,233,085	+				-0.1
3,233,085	+				+0.6
3,233,085	+				-0.3
3,233,085	+				+0.3
3,233,085	+				+0.8
3,233,085	+				-0.9
3,233,085	+				+0.2
3,233,085	+				-0.5
3,233,086	-				+0.0
3,233,086	-				+0.3
3,233,086	-				+0.2
3,233,086	-				+0.5
3,233,086	-				-0.4
3,233,092	-				+0.5
3,233,092	-				+0.9
3,233,105	-				-1.0
3,233,105	-				+0.8
3,233,105	-				+1.1
3,233,136	+				+1.2
3,233,170	+		Sama_2702	0.11	-0.6
3,233,170	+		Sama_2702	0.11	-0.3
3,233,170	+		Sama_2702	0.11	-1.0
3,233,171	-		Sama_2702	0.11	+0.2
3,233,191	+		Sama_2702	0.13	-1.8