Strain Fitness in Shewanella amazonensis SB2B around Sama_2698

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
3,228,908	+				-0.8
3,228,908	+				+0.2
3,229,013	+				-0.3
3,229,029	+				+0.3
3,229,030	-				+0.5
3,229,036	-				-1.3
3,229,045	-				-0.6
3,229,045	-				-0.2
3,229,075	+				+0.6
3,229,076	-				-0.8
3,229,076	-				+0.0
3,229,121	+		Sama_2697	0.12	-0.4
3,229,121	+		Sama_2697	0.12	+1.5
3,229,122	-		Sama_2697	0.13	+2.5
3,229,122	-		Sama_2697	0.13	-0.5
3,229,190	+		Sama_2697	0.21	-0.6
3,229,190	+		Sama_2697	0.21	-0.9
3,229,190	+		Sama_2697	0.21	-0.9
3,229,194	+		Sama_2697	0.21	-1.6
3,229,194	+		Sama_2697	0.21	-0.5
3,229,194	+		Sama_2697	0.21	+0.8
3,229,194	+		Sama_2697	0.21	+0.4
3,229,195	-		Sama_2697	0.21	+1.9
3,229,195	-		Sama_2697	0.21	-0.5
3,229,214	+		Sama_2697	0.23	+1.0
3,229,215	-		Sama_2697	0.24	+0.8
3,229,215	-		Sama_2697	0.24	+0.1
3,229,215	-		Sama_2697	0.24	+1.0
3,229,260	+		Sama_2697	0.29	-0.2
3,229,260	+		Sama_2697	0.29	+1.1
3,229,260	+		Sama_2697	0.29	-0.9
3,229,260	+		Sama_2697	0.29	-1.2
3,229,260	+		Sama_2697	0.29	-1.1
3,229,260	+		Sama_2697	0.29	-1.3
3,229,260	+		Sama_2697	0.29	+0.0
3,229,261	-		Sama_2697	0.29	+0.5
3,229,261	-		Sama_2697	0.29	+0.0
3,229,261	-		Sama_2697	0.29	-0.4
3,229,261	-		Sama_2697	0.29	-2.0
3,229,261	-		Sama_2697	0.29	-0.9
3,229,261	-		Sama_2697	0.29	-0.5
3,229,261	-		Sama_2697	0.29	-0.0
3,229,261	-		Sama_2697	0.29	-0.8
3,229,261	-		Sama_2697	0.29	+0.3
3,229,261	-		Sama_2697	0.29	-1.4
3,229,262	+		Sama_2697	0.29	-0.3
3,229,262	+		Sama_2697	0.29	-0.9
3,229,263	-		Sama_2697	0.29	+0.3
3,229,263	-		Sama_2697	0.29	-0.3
3,229,263	-		Sama_2697	0.29	-0.8
3,229,263	-		Sama_2697	0.29	-0.0
3,229,263	-		Sama_2697	0.29	+1.5
3,229,263	-		Sama_2697	0.29	+1.1
3,229,263	-		Sama_2697	0.29	+0.2
3,229,263	-		Sama_2697	0.29	-0.6
3,229,263	-		Sama_2697	0.29	+0.1
3,229,263	-		Sama_2697	0.29	+0.7
3,229,263	-		Sama_2697	0.29	-0.4
3,229,263	-		Sama_2697	0.29	-0.0
3,229,263	-		Sama_2697	0.29	-0.2
3,229,263	-		Sama_2697	0.29	+0.0
3,229,278	-		Sama_2697	0.31	-0.1
3,229,306	+		Sama_2697	0.34	+0.3
3,229,306	+		Sama_2697	0.34	+0.1
3,229,357	+		Sama_2697	0.40	-1.8
3,229,358	-		Sama_2697	0.40	+0.3
3,229,433	-		Sama_2697	0.49	+0.0
3,229,445	+		Sama_2697	0.51	-1.5
3,229,445	+		Sama_2697	0.51	-1.7
3,229,445	+		Sama_2697	0.51	-0.9
3,229,445	+		Sama_2697	0.51	+0.5
3,229,446	-		Sama_2697	0.51	-0.7
3,229,446	-		Sama_2697	0.51	-0.9
3,229,495	-		Sama_2697	0.57	-0.6
3,229,495	-		Sama_2697	0.57	-0.9
3,229,495	-		Sama_2697	0.57	+0.9
3,229,495	-		Sama_2697	0.57	+0.5
3,229,495	-		Sama_2697	0.57	-1.3
3,229,533	-		Sama_2697	0.61	+0.1
3,229,562	+		Sama_2697	0.65	-1.0
3,229,563	-		Sama_2697	0.65	-1.1
3,229,607	+		Sama_2697	0.70	-1.5
3,229,608	-		Sama_2697	0.70	+0.7
3,229,631	+		Sama_2697	0.73	-0.0
3,229,631	+		Sama_2697	0.73	-0.9
3,229,635	-		Sama_2697	0.73	-1.9
3,229,727	+		Sama_2697	0.84	+0.0
3,229,728	-		Sama_2697	0.84	+0.9
3,229,752	+		Sama_2697	0.87	+0.1
3,229,824	+				-0.7
3,229,825	-				+0.0
3,229,827	+				-1.9
3,229,828	-				-0.3
3,229,828	-				-2.0
3,229,832	+				+0.1
3,229,883	+				-0.4
3,229,883	+				+0.5
3,229,883	+				-0.6
3,229,884	-				+0.4
3,229,884	-				-0.0
3,229,884	-				+1.0
3,229,908	-		Sama_2698	0.10	+0.2
3,229,908	-		Sama_2698	0.10	-1.0
3,229,916	+		Sama_2698	0.12	-0.7
3,229,916	+		Sama_2698	0.12	+0.3
3,229,916	+		Sama_2698	0.12	-1.3
3,229,916	+		Sama_2698	0.12	-0.7
3,229,917	-		Sama_2698	0.13	-2.3
3,229,955	+		Sama_2698	0.22	-0.0
3,229,955	+		Sama_2698	0.22	+1.3
3,229,956	-		Sama_2698	0.22	+0.2
3,229,981	+		Sama_2698	0.29	+1.0
3,229,982	-		Sama_2698	0.29	-0.0
3,230,083	+		Sama_2698	0.55	-0.5
3,230,083	+		Sama_2698	0.55	-1.2
3,230,084	-		Sama_2698	0.55	+0.0
3,230,092	+		Sama_2698	0.57	-2.2
3,230,092	+		Sama_2698	0.57	-0.2
3,230,092	+		Sama_2698	0.57	+0.8
3,230,092	+		Sama_2698	0.57	-0.1
3,230,093	-		Sama_2698	0.57	-0.2
3,230,135	+		Sama_2698	0.68	-0.2
3,230,136	-		Sama_2698	0.68	+1.2
3,230,136	-		Sama_2698	0.68	+1.4
3,230,136	-		Sama_2698	0.68	+0.1
3,230,136	-		Sama_2698	0.68	-1.8
3,230,161	-		Sama_2698	0.74	-0.0
3,230,161	-		Sama_2698	0.74	-0.0
3,230,178	+		Sama_2698	0.79	-0.8
3,230,178	+		Sama_2698	0.79	-2.3
3,230,178	+		Sama_2698	0.79	-1.6
3,230,178	+		Sama_2698	0.79	-0.5
3,230,178	+		Sama_2698	0.79	+0.0
3,230,178	+		Sama_2698	0.79	-0.2
3,230,179	-		Sama_2698	0.79	-1.6
3,230,179	-		Sama_2698	0.79	-0.0
3,230,179	-		Sama_2698	0.79	-0.2
3,230,269	+				+2.1
3,230,269	+				+0.1
3,230,269	+				-0.9
3,230,269	+				-0.2
3,230,269	+				+0.9
3,230,269	+				+0.8
3,230,270	-				-0.9
3,230,270	-				-1.2
3,230,290	+				+0.5
3,230,291	-				+0.5
3,230,301	+				-0.9
3,230,301	+				-1.2
3,230,301	+				+0.7
3,230,320	+				+1.1
3,230,392	+		Sama_2699	0.19	-0.4
3,230,392	+		Sama_2699	0.19	-1.6
3,230,392	+		Sama_2699	0.19	+0.5
3,230,416	+		Sama_2699	0.22	-0.5
3,230,416	+		Sama_2699	0.22	-0.5
3,230,417	-		Sama_2699	0.22	-1.2
3,230,521	+		Sama_2699	0.37	-0.1
3,230,522	-		Sama_2699	0.37	+0.4
3,230,522	-		Sama_2699	0.37	-0.0
3,230,522	-		Sama_2699	0.37	-0.5
3,230,533	+		Sama_2699	0.39	-0.6
3,230,533	+		Sama_2699	0.39	+0.3
3,230,533	+		Sama_2699	0.39	-0.9
3,230,543	+		Sama_2699	0.40	-0.2
3,230,562	+		Sama_2699	0.43	-0.2
3,230,562	+		Sama_2699	0.43	+0.5
3,230,562	+		Sama_2699	0.43	-0.8
3,230,563	-		Sama_2699	0.43	+1.0
3,230,563	-		Sama_2699	0.43	-0.4
3,230,563	-		Sama_2699	0.43	-0.7
3,230,563	-		Sama_2699	0.43	+0.5
3,230,563	-		Sama_2699	0.43	-0.8
3,230,563	-		Sama_2699	0.43	-0.2
3,230,563	-		Sama_2699	0.43	+0.5
3,230,563	-		Sama_2699	0.43	-0.7
3,230,564	+		Sama_2699	0.43	+0.1
3,230,564	+		Sama_2699	0.43	+0.1
3,230,564	+		Sama_2699	0.43	+0.4
3,230,564	+		Sama_2699	0.43	-0.2
3,230,564	+		Sama_2699	0.43	+0.9
3,230,565	-		Sama_2699	0.43	+0.5
3,230,565	-		Sama_2699	0.43	-0.6
3,230,594	-		Sama_2699	0.47	-0.3
3,230,618	-		Sama_2699	0.51	-1.2
3,230,759	-		Sama_2699	0.71	-0.5
3,230,794	-		Sama_2699	0.76	-1.6
3,230,866	+		Sama_2699	0.86	+1.3
3,230,870	+		Sama_2699	0.87	+0.1
3,230,906	+				-0.7
3,230,906	+				-0.5
3,230,907	-				-0.9
3,230,910	+				-2.0
3,230,910	+				+0.6
3,230,910	+				-0.5
3,230,910	+				-1.3
3,230,910	+				+0.8
3,230,910	+				-0.5
3,230,910	+				+0.2
3,230,910	+				-0.5
3,230,910	+				-1.1
3,230,911	-				-0.7
3,230,911	-				+0.8
3,230,911	-				+0.0
3,230,911	-				-0.4
3,230,911	-				-0.6
3,230,911	-				-0.5
3,230,911	-				-2.5
3,230,911	-				+0.4
3,230,911	-				-0.2
3,230,911	-				-0.4
3,230,911	-				+0.5
3,230,911	-				-0.8
3,230,911	-				-1.0
3,230,911	-				-0.2
3,230,912	+				-0.2
3,230,912	+				+0.4
3,230,912	+				-0.5
3,230,912	+				-0.5
3,230,912	+				+1.9
3,230,912	+				-0.8
3,230,912	+				+0.0
3,230,912	+				+0.3
3,230,913	-				-0.7
3,230,913	-				+1.0
3,230,913	-				+0.2
3,230,913	-				+0.5
3,230,913	-				-0.1
3,230,913	-				-0.5
3,230,931	+				-0.5
3,230,932	-				-0.6
3,230,932	-				+0.5
3,230,932	-				-0.5
3,230,932	-				-0.7
3,230,932	-				-0.4
3,230,978	+				+0.1
3,230,978	+				-0.5
3,230,982	-				+0.3
3,230,982	-				-0.2
3,230,982	-				-0.3
3,231,014	-				-0.3
3,231,020	-				+0.4
3,231,029	+				+0.2
3,231,044	+				-0.7
3,231,045	-				-1.1
3,231,080	+				+1.3
3,231,081	-		Sama_2700	0.10	-1.2
3,231,081	-		Sama_2700	0.10	+0.9
3,231,104	+		Sama_2700	0.12	+0.2
3,231,105	-		Sama_2700	0.12	+0.3
3,231,105	-		Sama_2700	0.12	-2.0
3,231,105	-		Sama_2700	0.12	-0.3
3,231,226	-		Sama_2700	0.22	+0.7
3,231,226	-		Sama_2700	0.22	-0.2
3,231,257	+		Sama_2700	0.24	-0.5
3,231,257	+		Sama_2700	0.24	-1.1
3,231,258	-		Sama_2700	0.24	+1.2
3,231,258	-		Sama_2700	0.24	-0.7
3,231,258	-		Sama_2700	0.24	-0.1
3,231,258	-		Sama_2700	0.24	-1.2
3,231,260	+		Sama_2700	0.24	+0.4