Strain Fitness in Shewanella amazonensis SB2B around Sama_2587
Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.0125 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,094,499 | - | -2.5 | |||
3,094,534 | + | -1.8 | |||
3,094,578 | + | Sama_2586 | 0.11 | -0.6 | |
3,094,593 | + | Sama_2586 | 0.15 | +0.1 | |
3,094,593 | + | Sama_2586 | 0.15 | -0.5 | |
3,094,613 | + | Sama_2586 | 0.21 | -0.8 | |
3,094,648 | + | Sama_2586 | 0.32 | +0.9 | |
3,094,648 | + | Sama_2586 | 0.32 | -2.3 | |
3,094,648 | + | Sama_2586 | 0.32 | -2.3 | |
3,094,648 | + | Sama_2586 | 0.32 | -0.3 | |
3,094,648 | + | Sama_2586 | 0.32 | +0.2 | |
3,094,737 | + | Sama_2586 | 0.59 | -0.3 | |
3,094,737 | + | Sama_2586 | 0.59 | +0.1 | |
3,094,935 | + | Sama_2587 | 0.14 | +1.8 | |
3,094,958 | + | Sama_2587 | 0.19 | +0.7 | |
3,095,075 | + | Sama_2587 | 0.44 | +0.4 | |
3,095,309 | + | -1.6 | |||
3,095,325 | + | -0.8 | |||
3,095,337 | + | -1.2 | |||
3,095,337 | + | -1.1 |
Or see this region's nucleotide sequence