Strain Fitness in Shewanella amazonensis SB2B around Sama_2587

Experiment: Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2585 and Sama_2586 are separated by 72 nucleotidesSama_2586 and Sama_2587 overlap by 1 nucleotidesSama_2587 and Sama_2588 are separated by 64 nucleotides Sama_2585: Sama_2585 - nicotinate-nucleotide adenylyltransferase (RefSeq), at 3,093,820 to 3,094,470 _2585 Sama_2586: Sama_2586 - iojap domain-containing protein (RefSeq), at 3,094,543 to 3,094,869 _2586 Sama_2587: Sama_2587 - rRNA large subunit methyltransferase (RefSeq), at 3,094,869 to 3,095,339 _2587 Sama_2588: Sama_2588 - peptidoglycan glycosyltransferase (RefSeq), at 3,095,404 to 3,097,236 _2588 Position (kb) 3094 3095 3096Strain fitness (log2 ratio) -2 -1 0 1 2at 3094.499 kb on - strandat 3094.534 kb on + strandat 3094.578 kb on + strand, within Sama_2586at 3094.593 kb on + strand, within Sama_2586at 3094.593 kb on + strand, within Sama_2586at 3094.613 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.737 kb on + strand, within Sama_2586at 3094.737 kb on + strand, within Sama_2586at 3094.935 kb on + strand, within Sama_2587at 3094.958 kb on + strand, within Sama_2587at 3095.075 kb on + strand, within Sama_2587at 3095.309 kb on + strandat 3095.325 kb on + strandat 3095.337 kb on + strandat 3095.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml
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3,094,499 - -2.5
3,094,534 + -1.8
3,094,578 + Sama_2586 0.11 -0.6
3,094,593 + Sama_2586 0.15 +0.1
3,094,593 + Sama_2586 0.15 -0.5
3,094,613 + Sama_2586 0.21 -0.8
3,094,648 + Sama_2586 0.32 +0.9
3,094,648 + Sama_2586 0.32 -2.3
3,094,648 + Sama_2586 0.32 -2.3
3,094,648 + Sama_2586 0.32 -0.3
3,094,648 + Sama_2586 0.32 +0.2
3,094,737 + Sama_2586 0.59 -0.3
3,094,737 + Sama_2586 0.59 +0.1
3,094,935 + Sama_2587 0.14 +1.8
3,094,958 + Sama_2587 0.19 +0.7
3,095,075 + Sama_2587 0.44 +0.4
3,095,309 + -1.6
3,095,325 + -0.8
3,095,337 + -1.2
3,095,337 + -1.1

Or see this region's nucleotide sequence