Strain Fitness in Shewanella amazonensis SB2B around Sama_2480

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,981,529	-		Sama_2478	0.57	-2.6
2,981,555	+		Sama_2478	0.60	+0.0
2,981,557	+		Sama_2478	0.60	-0.7
2,981,557	+		Sama_2478	0.60	-0.6
2,981,557	+		Sama_2478	0.60	+0.4
2,981,557	+		Sama_2478	0.60	-1.0
2,981,557	+		Sama_2478	0.60	-0.6
2,981,561	+		Sama_2478	0.61	+0.6
2,981,561	+		Sama_2478	0.61	-1.7
2,981,561	+		Sama_2478	0.61	+1.2
2,981,561	+		Sama_2478	0.61	-1.8
2,981,567	+		Sama_2478	0.62	-0.9
2,981,567	+		Sama_2478	0.62	-0.6
2,981,567	+		Sama_2478	0.62	+1.2
2,981,568	-		Sama_2478	0.62	-2.1
2,981,595	+		Sama_2478	0.65	+0.0
2,981,707	+		Sama_2478	0.79	+0.2
2,981,708	-		Sama_2478	0.79	-1.9
2,981,708	-		Sama_2478	0.79	-1.1
2,981,843	+				+0.4
2,981,843	+				+0.6
2,981,844	-				-2.9
2,981,895	+				-0.9
2,981,895	+				+0.4
2,981,895	+				-2.3
2,981,895	+				+1.8
2,981,906	+				-0.3
2,981,906	+				+0.3
2,982,436	+				-2.1
2,982,447	+				-2.7
2,982,504	+		Sama_2480	0.11	-1.1
2,982,504	+		Sama_2480	0.11	-0.6
2,982,518	+		Sama_2480	0.16	+0.4
2,982,518	+		Sama_2480	0.16	-1.1
2,982,518	+		Sama_2480	0.16	-0.2
2,982,518	+		Sama_2480	0.16	-1.0
2,982,518	+		Sama_2480	0.16	-0.2
2,982,518	+		Sama_2480	0.16	-1.9
2,982,518	+		Sama_2480	0.16	-1.2
2,982,519	-		Sama_2480	0.16	-0.8
2,982,519	-		Sama_2480	0.16	-0.7
2,982,519	-		Sama_2480	0.16	-2.5
2,982,519	-		Sama_2480	0.16	-0.3
2,982,519	-		Sama_2480	0.16	+1.9
2,982,519	-		Sama_2480	0.16	-0.4
2,982,519	-		Sama_2480	0.16	-1.1
2,982,519	-		Sama_2480	0.16	-0.7
2,982,519	-		Sama_2480	0.16	-0.6
2,982,519	-		Sama_2480	0.16	-0.6
2,982,519	-		Sama_2480	0.16	-1.0
2,982,522	+		Sama_2480	0.17	-0.6
2,982,522	+		Sama_2480	0.17	-0.4
2,982,522	+		Sama_2480	0.17	-1.1
2,982,522	+		Sama_2480	0.17	+1.2
2,982,523	-		Sama_2480	0.17	-0.3
2,982,573	+		Sama_2480	0.35	+0.2
2,982,674	-		Sama_2480	0.70	-0.4
2,982,700	+		Sama_2480	0.79	-0.5
2,982,708	+		Sama_2480	0.82	+0.7
2,982,712	+		Sama_2480	0.83	+0.4
2,982,712	+		Sama_2480	0.83	-0.3
2,982,712	+		Sama_2480	0.83	+0.2
2,982,712	+		Sama_2480	0.83	-0.6
2,982,713	-		Sama_2480	0.83	-0.4
2,982,713	-		Sama_2480	0.83	+0.6
2,982,713	-		Sama_2480	0.83	-0.7
2,982,729	+		Sama_2480	0.89	-0.3
2,982,730	-		Sama_2480	0.89	+0.4
2,982,758	+				-1.6
2,982,778	+				+0.0
2,982,778	+				+0.9
2,982,779	-				-0.0
2,982,791	-				-0.1
2,982,791	-				-0.5
2,982,805	+				+1.8
2,982,805	+				+1.8
2,982,806	-				+1.0
2,982,807	+				-0.6
2,982,807	+				-0.1
2,982,807	+				+0.4
2,982,807	+				-0.2
2,982,807	+				-0.0
2,982,807	+				+0.3
2,982,808	-				+0.8
2,982,808	-				-1.1
2,982,808	-				+0.1
2,982,808	-				-0.3
2,982,811	+				-1.4
2,982,811	+				-1.9
2,982,811	+				-0.7
2,982,811	+				-0.5
2,982,811	+				-1.4
2,982,811	+				+0.5
2,982,811	+				+0.0
2,982,812	-				-0.1
2,982,812	-				+0.9
2,982,812	-				+0.3
2,982,814	-				-0.8
2,982,814	-				-0.1
2,982,836	+				-0.4
2,982,836	+				+1.1
2,982,836	+				+0.7
2,982,874	+				+0.4
2,982,874	+				-0.8
2,982,881	+				-0.3
2,982,922	+		Sama_2481	0.18	+0.1
2,982,923	-		Sama_2481	0.18	+0.7
2,982,923	-		Sama_2481	0.18	-0.2
2,982,942	+		Sama_2481	0.23	-0.4
2,982,942	+		Sama_2481	0.23	+1.9
2,982,942	+		Sama_2481	0.23	-0.3
2,982,942	+		Sama_2481	0.23	+0.7
2,982,942	+		Sama_2481	0.23	+0.9
2,982,942	+		Sama_2481	0.23	-0.4
2,982,942	+		Sama_2481	0.23	-0.0
2,982,942	+		Sama_2481	0.23	+0.2
2,982,943	-		Sama_2481	0.23	+1.2
2,982,943	-		Sama_2481	0.23	-0.4
2,982,944	+		Sama_2481	0.23	+0.9
2,982,944	+		Sama_2481	0.23	+0.0
2,982,944	+		Sama_2481	0.23	-0.1
2,982,945	-		Sama_2481	0.23	-0.1
2,982,945	-		Sama_2481	0.23	+0.2
2,982,945	-		Sama_2481	0.23	+1.4
2,982,959	+		Sama_2481	0.27	+0.5
2,982,990	+		Sama_2481	0.34	+0.3
2,982,990	+		Sama_2481	0.34	-1.0
2,982,991	-		Sama_2481	0.34	-1.2
2,982,991	-		Sama_2481	0.34	+1.7
2,982,997	+		Sama_2481	0.35	+0.6
2,982,997	+		Sama_2481	0.35	+0.1
2,982,998	-		Sama_2481	0.36	-0.6
2,983,012	-		Sama_2481	0.39	+0.6
2,983,012	-		Sama_2481	0.39	-0.8
2,983,012	-		Sama_2481	0.39	-0.6
2,983,021	+		Sama_2481	0.41	+3.0
2,983,028	+		Sama_2481	0.43	+0.6
2,983,029	-		Sama_2481	0.43	-0.8
2,983,029	-		Sama_2481	0.43	+1.7
2,983,158	+		Sama_2481	0.72	-1.7
2,983,158	+		Sama_2481	0.72	+0.9
2,983,158	+		Sama_2481	0.72	+1.2
2,983,159	-		Sama_2481	0.73	-0.7
2,983,159	-		Sama_2481	0.73	-0.6
2,983,159	-		Sama_2481	0.73	-1.7
2,983,162	-		Sama_2481	0.73	+0.3
2,983,162	-		Sama_2481	0.73	+0.2
2,983,162	-		Sama_2481	0.73	-1.9
2,983,162	-		Sama_2481	0.73	-0.1
2,983,162	-		Sama_2481	0.73	-1.1
2,983,217	-		Sama_2481	0.86	-0.6
2,983,347	+				+0.1
2,983,435	+				+1.1
2,983,436	-				+0.8
2,983,478	+		Sama_2482	0.12	+1.1
2,983,479	-		Sama_2482	0.12	+0.4
2,983,492	-		Sama_2482	0.14	+0.0
2,983,540	+		Sama_2482	0.22	+0.8
2,983,564	+		Sama_2482	0.26	-1.7
2,983,565	-		Sama_2482	0.26	+0.4
2,983,585	+		Sama_2482	0.29	+0.1
2,983,585	+		Sama_2482	0.29	-0.9
2,983,586	-		Sama_2482	0.30	+0.0
2,983,629	+		Sama_2482	0.37	-0.0
2,983,630	-		Sama_2482	0.37	-0.6
2,983,654	+		Sama_2482	0.41	-0.1
2,983,655	-		Sama_2482	0.41	-1.6
2,983,655	-		Sama_2482	0.41	-2.3
2,983,658	+		Sama_2482	0.42	-1.1
2,983,658	+		Sama_2482	0.42	+0.4
2,983,658	+		Sama_2482	0.42	-0.7
2,983,693	+		Sama_2482	0.48	-1.6
2,983,693	+		Sama_2482	0.48	-0.6
2,983,694	-		Sama_2482	0.48	+0.0
2,983,694	-		Sama_2482	0.48	+1.4