Strain Fitness in Shewanella amazonensis SB2B around Sama_2385

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,865,129	-		Sama_2384	0.15	-0.4
2,865,189	+		Sama_2384	0.22	-1.1
2,865,189	+		Sama_2384	0.22	+1.3
2,865,190	-		Sama_2384	0.22	-0.8
2,865,190	-		Sama_2384	0.22	-1.2
2,865,227	+		Sama_2384	0.27	-0.6
2,865,227	+		Sama_2384	0.27	+0.4
2,865,227	+		Sama_2384	0.27	-0.3
2,865,227	+		Sama_2384	0.27	+1.9
2,865,227	+		Sama_2384	0.27	+0.6
2,865,227	+		Sama_2384	0.27	-0.4
2,865,228	-		Sama_2384	0.27	+1.2
2,865,228	-		Sama_2384	0.27	-0.1
2,865,228	-		Sama_2384	0.27	-0.4
2,865,228	-		Sama_2384	0.27	-0.2
2,865,302	+		Sama_2384	0.36	+0.3
2,865,303	-		Sama_2384	0.36	-0.9
2,865,303	-		Sama_2384	0.36	-1.0
2,865,303	-		Sama_2384	0.36	-0.8
2,865,317	+		Sama_2384	0.38	-0.1
2,865,317	+		Sama_2384	0.38	+0.2
2,865,317	+		Sama_2384	0.38	-0.1
2,865,317	+		Sama_2384	0.38	+0.4
2,865,318	-		Sama_2384	0.38	-2.1
2,865,318	-		Sama_2384	0.38	-0.1
2,865,318	-		Sama_2384	0.38	-0.9
2,865,318	-		Sama_2384	0.38	+0.1
2,865,318	-		Sama_2384	0.38	+0.4
2,865,318	-		Sama_2384	0.38	-0.4
2,865,334	+		Sama_2384	0.40	-0.1
2,865,348	+		Sama_2384	0.42	+0.5
2,865,374	-		Sama_2384	0.45	+1.6
2,865,374	-		Sama_2384	0.45	+0.1
2,865,485	+		Sama_2384	0.59	-0.6
2,865,486	-		Sama_2384	0.60	-1.4
2,865,486	-		Sama_2384	0.60	+0.1
2,865,493	+		Sama_2384	0.60	-1.9
2,865,493	+		Sama_2384	0.60	+0.2
2,865,493	+		Sama_2384	0.60	+0.4
2,865,494	-		Sama_2384	0.61	+0.3
2,865,494	-		Sama_2384	0.61	+0.4
2,865,494	-		Sama_2384	0.61	+0.7
2,865,494	-		Sama_2384	0.61	-0.2
2,865,494	-		Sama_2384	0.61	-0.3
2,865,494	-		Sama_2384	0.61	-0.4
2,865,494	-		Sama_2384	0.61	+0.4
2,865,494	-		Sama_2384	0.61	-0.0
2,865,494	-		Sama_2384	0.61	+0.0
2,865,494	-		Sama_2384	0.61	-0.7
2,865,494	-		Sama_2384	0.61	-0.4
2,865,528	+		Sama_2384	0.65	+0.8
2,865,529	-		Sama_2384	0.65	-0.6
2,865,529	-		Sama_2384	0.65	-0.6
2,865,529	-		Sama_2384	0.65	+0.6
2,865,594	+		Sama_2384	0.73	-2.3
2,865,595	-		Sama_2384	0.73	-0.0
2,865,614	+		Sama_2384	0.76	+0.1
2,865,615	-		Sama_2384	0.76	-0.1
2,865,615	-		Sama_2384	0.76	+1.0
2,865,615	-		Sama_2384	0.76	+0.4
2,865,615	-		Sama_2384	0.76	-0.0
2,865,615	-		Sama_2384	0.76	-0.6
2,865,633	+		Sama_2384	0.78	-0.1
2,865,633	+		Sama_2384	0.78	-0.6
2,865,665	-		Sama_2384	0.82	+0.7
2,865,679	-		Sama_2384	0.84	-0.9
2,865,679	-		Sama_2384	0.84	-0.6
2,865,679	-		Sama_2384	0.84	-0.0
2,865,714	-		Sama_2384	0.88	+0.9
2,865,773	+				-1.0
2,865,774	-				-0.1
2,865,799	+				+0.8
2,865,800	-				-0.3
2,865,859	-				+0.4
2,865,859	-				+0.6
2,865,890	+				-1.3
2,865,910	-				+1.1
2,865,915	+				-0.7
2,865,916	-				-0.3
2,865,942	+				+0.2
2,865,942	+				-0.3
2,865,946	+				+0.2
2,865,946	+				+0.1
2,865,946	+				+2.3
2,865,946	+				-0.4
2,865,947	-				+0.4
2,865,947	-				+0.7
2,865,970	-				+0.5
2,866,472	+		Sama_2385	0.72	-1.4
2,866,473	-		Sama_2385	0.72	-0.9
2,866,491	-		Sama_2385	0.76	-0.9
2,866,620	+				+0.9
2,866,671	+				+0.4
2,866,671	+				-1.7
2,866,672	-				+0.6
2,866,689	-				+0.4
2,866,689	-				-0.5
2,866,689	-				-0.0
2,866,689	-				+0.0
2,866,709	+				-0.3
2,866,709	+				+0.4
2,866,709	+				+0.4
2,866,710	-				-0.4
2,866,710	-				+0.4
2,866,712	-				-0.2
2,866,751	+				-0.2
2,866,752	-				-2.1
2,866,752	-				-1.6
2,867,066	-				+1.9
2,867,066	-				+1.4
2,867,066	-				-0.4
2,867,068	-				+1.3
2,867,068	-				-0.6
2,867,068	-				+0.8
2,867,068	-				+2.0
2,867,071	-				+0.0
2,867,071	-				+0.6
2,867,071	-				+0.9
2,867,533	-				+0.8
2,867,533	-				+1.0
2,867,533	-				+0.6
2,867,586	+				+0.3