Strain Fitness in Shewanella amazonensis SB2B around Sama_2326

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,788,292	+		Sama_2324	0.84	-0.4
2,788,293	-		Sama_2324	0.84	-0.3
2,788,293	-		Sama_2324	0.84	-2.1
2,788,293	-		Sama_2324	0.84	-0.3
2,788,293	-		Sama_2324	0.84	-0.1
2,788,296	+		Sama_2324	0.84	+0.4
2,788,296	+		Sama_2324	0.84	-0.4
2,788,296	+		Sama_2324	0.84	+1.2
2,788,297	-		Sama_2324	0.85	-0.7
2,788,297	-		Sama_2324	0.85	-0.6
2,788,297	-		Sama_2324	0.85	+0.2
2,788,350	+				-0.2
2,788,350	+				-0.0
2,788,351	-				+0.1
2,788,351	-				-2.2
2,788,412	+				+1.8
2,788,412	+				-0.0
2,788,418	+				-1.4
2,788,418	+				+1.6
2,788,418	+				-1.1
2,788,418	+				+0.4
2,788,418	+				+0.7
2,788,418	+				-0.6
2,788,419	-				-2.1
2,788,419	-				-1.3
2,788,419	-				-0.2
2,788,419	-				+0.1
2,788,419	-				+1.3
2,788,423	+				-0.0
2,788,454	+		Sama_2325	0.14	+0.0
2,788,463	+		Sama_2325	0.16	+0.3
2,788,546	+		Sama_2325	0.29	-0.6
2,788,547	-		Sama_2325	0.29	+0.3
2,788,574	+		Sama_2325	0.33	-0.5
2,788,574	+		Sama_2325	0.33	-0.3
2,788,574	+		Sama_2325	0.33	-0.7
2,788,575	-		Sama_2325	0.33	-1.6
2,788,575	-		Sama_2325	0.33	-0.6
2,788,660	-		Sama_2325	0.47	-1.1
2,788,693	+		Sama_2325	0.52	-0.6
2,788,694	-		Sama_2325	0.52	-0.8
2,788,694	-		Sama_2325	0.52	+0.0
2,788,694	-		Sama_2325	0.52	+0.7
2,788,699	-		Sama_2325	0.53	-0.3
2,788,703	+		Sama_2325	0.54	+0.3
2,788,738	+		Sama_2325	0.59	-0.2
2,788,739	-		Sama_2325	0.59	-2.7
2,788,761	+		Sama_2325	0.63	-0.9
2,788,822	+		Sama_2325	0.73	-0.8
2,788,823	-		Sama_2325	0.73	-1.4
2,788,823	-		Sama_2325	0.73	+0.4
2,788,823	-		Sama_2325	0.73	-0.2
2,788,840	+		Sama_2325	0.75	-1.1
2,788,840	+		Sama_2325	0.75	+0.3
2,788,841	-		Sama_2325	0.76	+1.1
2,788,853	-		Sama_2325	0.77	-1.5
2,788,853	-		Sama_2325	0.77	+0.1
2,788,853	-		Sama_2325	0.77	-2.1
2,788,912	+		Sama_2325	0.87	-0.7
2,788,913	-		Sama_2325	0.87	-0.5
2,788,913	-		Sama_2325	0.87	+0.4
2,788,913	-		Sama_2325	0.87	+0.0
2,788,916	-		Sama_2325	0.87	+0.3
2,788,996	-				+0.3
2,789,024	+				-0.2
2,789,025	-				+0.7
2,789,025	-				+1.8
2,789,061	-				-0.3
2,789,069	-				+0.3
2,789,069	-				-0.4
2,789,088	-				+0.7
2,789,093	-				-0.4
2,789,093	-				+1.0
2,789,093	-				-0.6
2,789,093	-				-0.8
2,789,150	+				+1.4
2,789,157	+				-0.1
2,789,202	+				+0.8
2,789,202	+				+0.6
2,789,202	+				+0.7
2,789,203	-				+0.2
2,789,203	-				+0.3
2,789,203	-				-0.9
2,789,281	-				-0.4
2,789,291	+				-0.4
2,789,291	+				-2.5
2,789,292	-				-0.9
2,789,306	+				-0.9
2,789,306	+				+0.6
2,789,415	-		Sama_2326	0.11	-1.2
2,789,431	+		Sama_2326	0.13	-0.2
2,789,431	+		Sama_2326	0.13	-1.0
2,789,432	-		Sama_2326	0.13	-0.1
2,789,432	-		Sama_2326	0.13	+0.5
2,789,475	+		Sama_2326	0.16	-1.1
2,789,475	+		Sama_2326	0.16	-1.2
2,789,475	+		Sama_2326	0.16	-1.3
2,789,475	+		Sama_2326	0.16	-0.3
2,789,476	-		Sama_2326	0.17	-1.2
2,789,476	-		Sama_2326	0.17	-1.7
2,789,476	-		Sama_2326	0.17	-0.5
2,789,476	-		Sama_2326	0.17	-2.4
2,789,476	-		Sama_2326	0.17	+0.1
2,789,476	-		Sama_2326	0.17	-1.3
2,789,476	-		Sama_2326	0.17	-1.5
2,789,499	+		Sama_2326	0.19	-0.4
2,789,500	-		Sama_2326	0.19	-0.3
2,789,540	+		Sama_2326	0.22	-2.4
2,789,540	+		Sama_2326	0.22	-2.1
2,789,541	-		Sama_2326	0.22	-0.3
2,789,541	-		Sama_2326	0.22	-0.5
2,789,583	-		Sama_2326	0.26	+1.2
2,789,632	-		Sama_2326	0.30	-0.9
2,789,632	-		Sama_2326	0.30	+1.0
2,789,705	+		Sama_2326	0.36	-0.8
2,789,727	-		Sama_2326	0.38	-1.7
2,789,757	+		Sama_2326	0.40	-0.4
2,789,757	+		Sama_2326	0.40	-1.9
2,789,758	-		Sama_2326	0.41	+0.0
2,789,878	+		Sama_2326	0.51	+0.5
2,789,879	-		Sama_2326	0.51	-0.4
2,789,879	-		Sama_2326	0.51	-1.5
2,789,879	-		Sama_2326	0.51	-0.8
2,789,932	+		Sama_2326	0.55	-0.2
2,789,933	-		Sama_2326	0.55	-1.9
2,789,945	+		Sama_2326	0.56	+0.1
2,789,946	-		Sama_2326	0.57	-1.5
2,790,013	-		Sama_2326	0.62	-1.3
2,790,060	+		Sama_2326	0.66	-0.3
2,790,060	+		Sama_2326	0.66	-1.0
2,790,123	+		Sama_2326	0.72	-0.7
2,790,124	-		Sama_2326	0.72	-1.5
2,790,134	+		Sama_2326	0.73	-0.1
2,790,143	+		Sama_2326	0.73	-1.1
2,790,144	-		Sama_2326	0.73	-0.4
2,790,300	-		Sama_2326	0.87	-1.5
2,790,330	+		Sama_2326	0.89	-1.5
2,790,331	-		Sama_2326	0.89	-0.9
2,790,347	+				-1.0
2,790,347	+				-1.5
2,790,348	-				-1.9
2,790,416	+				-1.2
2,790,462	+				-1.1
2,790,463	-				-1.0
2,790,466	+				-0.2
2,790,466	+				+1.4
2,790,466	+				+0.8
2,790,489	-				-1.1
2,790,493	+				+0.2
2,790,494	-				-0.1
2,790,498	-				-0.1
2,790,500	-				-0.7
2,790,500	-				+0.0
2,790,516	+				-1.1
2,790,519	-		Sama_R0099	0.11	+0.2
2,790,531	+		Sama_R0099	0.26	-0.1
2,790,547	+		Sama_R0099	0.47	+0.0
2,790,547	+		Sama_R0099	0.47	+0.1
2,790,680	+				+0.2
2,790,711	+				-0.5
2,790,718	+				+1.5
2,790,718	+				+0.2
2,790,718	+				+0.5
2,790,718	+				-0.6
2,790,722	+				-1.7
2,790,723	-				-1.1
2,790,740	+				-1.5
2,790,777	-				-0.8
2,790,777	-				+0.0
2,790,803	+				+0.9
2,790,803	+				-0.2
2,790,803	+				-1.0
2,790,842	+				+0.6
2,790,843	-				+0.4
2,790,888	+				-1.0
2,790,888	+				-1.5
2,790,889	-				+0.0
2,790,889	-				-0.9
2,790,921	+				+0.7
2,790,946	-				+0.6
2,790,951	-				-0.5
2,790,967	+				-0.7
2,790,967	+				-0.4
2,790,968	-				+0.1
2,790,985	+				+1.3
2,790,986	-				+0.1
2,790,986	-				+1.3
2,790,986	-				+0.0
2,791,013	+				-0.9
2,791,014	-				-0.1
2,791,033	+				-0.5
2,791,034	-				-0.3
2,791,063	+				+0.9
2,791,063	+				-0.2
2,791,064	-				-0.1
2,791,064	-				-0.2
2,791,080	+				+0.6
2,791,080	+				+0.7
2,791,080	+				+1.5
2,791,080	+				+0.5
2,791,081	-				+0.5
2,791,081	-				+0.3
2,791,081	-				+0.5
2,791,081	-				+0.5
2,791,081	-				-0.7
2,791,081	-				+0.5
2,791,081	-				+1.0
2,791,081	-				-0.3
2,791,081	-				+0.6
2,791,207	-				-0.2
2,791,213	+				+0.5
2,791,214	-				+0.6
2,791,217	+				+0.2
2,791,412	+		Sama_2327	0.12	+0.7
2,791,412	+		Sama_2327	0.12	-0.1
2,791,412	+		Sama_2327	0.12	+0.9
2,791,413	-		Sama_2327	0.12	+0.4
2,791,413	-		Sama_2327	0.12	+0.6
2,791,424	-		Sama_2327	0.13	+0.9
2,791,424	-		Sama_2327	0.13	-1.9