Strain Fitness in Shewanella amazonensis SB2B around Sama_2321

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,785,175	+		Sama_2320	0.20	-2.6
2,785,175	+		Sama_2320	0.20	+1.0
2,785,209	+		Sama_2320	0.23	-0.9
2,785,296	+		Sama_2320	0.33	+0.4
2,785,371	+		Sama_2320	0.41	+0.6
2,785,372	-		Sama_2320	0.41	+0.7
2,785,372	-		Sama_2320	0.41	-0.1
2,785,429	-		Sama_2320	0.47	+0.1
2,785,429	-		Sama_2320	0.47	+0.2
2,785,434	+		Sama_2320	0.48	+0.2
2,785,435	-		Sama_2320	0.48	+0.9
2,785,516	+		Sama_2320	0.57	-0.5
2,785,517	-		Sama_2320	0.57	+0.7
2,785,517	-		Sama_2320	0.57	-1.6
2,785,517	-		Sama_2320	0.57	-1.1
2,785,521	-		Sama_2320	0.57	+0.7
2,785,527	-		Sama_2320	0.58	-1.3
2,785,527	-		Sama_2320	0.58	+0.9
2,785,555	+		Sama_2320	0.61	-0.9
2,785,623	+		Sama_2320	0.68	-1.2
2,785,625	+		Sama_2320	0.69	+0.3
2,785,638	+		Sama_2320	0.70	-0.2
2,785,786	+		Sama_2320	0.86	+0.2
2,785,787	-		Sama_2320	0.86	-1.0
2,785,787	-		Sama_2320	0.86	+3.6
2,785,813	-		Sama_2320	0.89	-1.6
2,785,813	-		Sama_2320	0.89	-0.3
2,785,914	+				-0.4
2,785,914	+				+0.4
2,785,915	-				-0.6
2,785,915	-				+1.0
2,785,915	-				+0.9
2,785,915	-				+0.4
2,785,967	-				-1.6
2,785,967	-				+0.6
2,785,967	-				-1.1
2,785,974	+				+0.0
2,785,974	+				-0.3
2,785,974	+				-1.0
2,785,974	+				-0.4
2,785,975	-				+0.3
2,785,975	-				-0.1
2,785,975	-				-0.3
2,785,975	-				-1.4
2,785,975	-				-0.4
2,785,988	+				-0.6
2,786,059	-				-0.2
2,786,079	+				-1.7
2,786,079	+				-0.4
2,786,080	-				-0.9
2,786,080	-				-0.7
2,786,080	-				+0.7
2,786,080	-				-0.6
2,786,081	+				+1.6
2,786,081	+				+1.4
2,786,081	+				-0.2
2,786,081	+				-0.5
2,786,082	-				-0.8
2,786,082	-				+0.1
2,786,082	-				-0.8
2,786,082	-				-0.6
2,786,082	-				+1.1
2,786,082	-				-0.4
2,786,088	-				+0.0
2,786,088	-				-0.6
2,786,105	+				-0.7
2,786,106	-				-0.6
2,786,117	+				+1.5
2,786,119	-				+0.6
2,786,125	+				+0.8
2,786,161	+				-0.1
2,786,171	-				+0.2
2,786,192	+	flgA	Sama_2321	0.10	-1.6
2,786,193	-	flgA	Sama_2321	0.11	+0.4
2,786,202	-	flgA	Sama_2321	0.12	-0.7
2,786,202	-	flgA	Sama_2321	0.12	-1.6
2,786,204	-	flgA	Sama_2321	0.12	-1.8
2,786,278	+	flgA	Sama_2321	0.23	-0.7
2,786,279	-	flgA	Sama_2321	0.23	-1.6
2,786,279	-	flgA	Sama_2321	0.23	-1.8
2,786,306	+	flgA	Sama_2321	0.27	-0.7
2,786,306	+	flgA	Sama_2321	0.27	-1.9
2,786,306	+	flgA	Sama_2321	0.27	-0.8
2,786,307	-	flgA	Sama_2321	0.27	-1.6
2,786,332	+	flgA	Sama_2321	0.30	-2.4
2,786,332	+	flgA	Sama_2321	0.30	-0.7
2,786,332	+	flgA	Sama_2321	0.30	-0.1
2,786,332	+	flgA	Sama_2321	0.30	-1.3
2,786,333	-	flgA	Sama_2321	0.30	-1.1
2,786,360	+	flgA	Sama_2321	0.34	-2.3
2,786,360	+	flgA	Sama_2321	0.34	-0.5
2,786,360	+	flgA	Sama_2321	0.34	-0.6
2,786,361	-	flgA	Sama_2321	0.34	-1.0
2,786,375	+	flgA	Sama_2321	0.36	-1.9
2,786,375	+	flgA	Sama_2321	0.36	-2.0
2,786,413	-	flgA	Sama_2321	0.42	+0.4
2,786,413	-	flgA	Sama_2321	0.42	-1.4
2,786,427	+	flgA	Sama_2321	0.44	-2.6
2,786,427	+	flgA	Sama_2321	0.44	-1.7
2,786,428	-	flgA	Sama_2321	0.44	+0.0
2,786,428	-	flgA	Sama_2321	0.44	-1.6
2,786,428	-	flgA	Sama_2321	0.44	-1.1
2,786,428	-	flgA	Sama_2321	0.44	-1.0
2,786,437	+	flgA	Sama_2321	0.45	-0.3
2,786,438	-	flgA	Sama_2321	0.45	-1.1
2,786,487	-	flgA	Sama_2321	0.52	-0.3
2,786,497	+	flgA	Sama_2321	0.54	-2.0
2,786,515	+	flgA	Sama_2321	0.56	-2.1
2,786,515	+	flgA	Sama_2321	0.56	-1.4
2,786,515	+	flgA	Sama_2321	0.56	-0.6
2,786,515	+	flgA	Sama_2321	0.56	-1.4
2,786,515	+	flgA	Sama_2321	0.56	-0.6
2,786,515	+	flgA	Sama_2321	0.56	-1.6
2,786,515	+	flgA	Sama_2321	0.56	+0.8
2,786,515	+	flgA	Sama_2321	0.56	-2.4
2,786,515	+	flgA	Sama_2321	0.56	-0.1
2,786,515	+	flgA	Sama_2321	0.56	+0.0
2,786,515	+	flgA	Sama_2321	0.56	-0.4
2,786,515	+	flgA	Sama_2321	0.56	+1.0
2,786,516	-	flgA	Sama_2321	0.56	-1.9
2,786,516	-	flgA	Sama_2321	0.56	-1.8
2,786,516	-	flgA	Sama_2321	0.56	-0.4
2,786,516	-	flgA	Sama_2321	0.56	-1.5
2,786,516	-	flgA	Sama_2321	0.56	+0.0
2,786,516	-	flgA	Sama_2321	0.56	-1.1
2,786,526	+	flgA	Sama_2321	0.58	+0.4
2,786,526	+	flgA	Sama_2321	0.58	-0.7
2,786,526	+	flgA	Sama_2321	0.58	-2.4
2,786,526	+	flgA	Sama_2321	0.58	+0.8
2,786,527	-	flgA	Sama_2321	0.58	-1.7
2,786,527	-	flgA	Sama_2321	0.58	-1.1
2,786,569	+	flgA	Sama_2321	0.64	+0.3
2,786,569	+	flgA	Sama_2321	0.64	-0.4
2,786,569	+	flgA	Sama_2321	0.64	-0.6
2,786,570	-	flgA	Sama_2321	0.64	-0.4
2,786,570	-	flgA	Sama_2321	0.64	-0.6
2,786,570	-	flgA	Sama_2321	0.64	-1.7
2,786,580	+	flgA	Sama_2321	0.65	-1.2
2,786,581	-	flgA	Sama_2321	0.65	-0.1
2,786,666	-	flgA	Sama_2321	0.77	-1.5
2,786,666	-	flgA	Sama_2321	0.77	+0.1
2,786,671	+	flgA	Sama_2321	0.78	-0.0
2,786,671	+	flgA	Sama_2321	0.78	-1.6
2,786,672	-	flgA	Sama_2321	0.78	-0.9
2,786,673	+	flgA	Sama_2321	0.78	+1.0
2,786,673	+	flgA	Sama_2321	0.78	+0.6
2,786,673	+	flgA	Sama_2321	0.78	+1.4
2,786,673	+	flgA	Sama_2321	0.78	-1.2
2,786,674	-	flgA	Sama_2321	0.79	-3.6
2,786,753	+	flgA	Sama_2321	0.90	-1.0
2,786,754	-	flgA	Sama_2321	0.90	-3.0
2,786,760	-				+0.3
2,786,777	-				-1.3
2,786,777	-				-0.5
2,786,779	+				-0.6
2,786,780	-				+1.4
2,786,786	+				-1.4
2,786,860	+				+0.4
2,786,861	-				+1.8
2,787,018	+		Sama_2322	0.35	+0.3
2,787,018	+		Sama_2322	0.35	+0.4
2,787,018	+		Sama_2322	0.35	+0.5
2,787,155	+		Sama_2322	0.76	+1.4
2,787,210	+				+0.8
2,787,210	+				-0.7
2,787,213	-				-0.0
2,787,279	+				-0.1
2,787,304	-				-1.4
2,787,304	-				-0.9
2,787,306	+				+0.5
2,787,306	+				-0.7
2,787,306	+				-0.6
2,787,306	+				-1.6
2,787,309	+				+0.5
2,787,582	+		Sama_2323	0.55	+0.9
2,787,583	-		Sama_2323	0.55	-2.6
2,787,591	+		Sama_2323	0.57	+0.8
2,787,592	-		Sama_2323	0.57	+0.8
2,787,613	+		Sama_2323	0.62	-0.2
2,787,613	+		Sama_2323	0.62	-0.8
2,787,613	+		Sama_2323	0.62	-0.0
2,787,614	-		Sama_2323	0.62	+0.4
2,787,614	-		Sama_2323	0.62	+0.8
2,787,687	+		Sama_2323	0.79	-0.6
2,787,688	-		Sama_2323	0.79	+0.9
2,787,693	+		Sama_2323	0.80	-0.6
2,787,693	+		Sama_2323	0.80	+0.7
2,787,693	+		Sama_2323	0.80	+1.8
2,787,694	-		Sama_2323	0.80	-0.7
2,787,694	-		Sama_2323	0.80	-1.4
2,787,715	+		Sama_2323	0.85	+0.4
2,787,715	+		Sama_2323	0.85	+1.6
2,787,716	-		Sama_2323	0.86	-2.1
2,787,720	-		Sama_2323	0.86	-0.5
2,787,728	-		Sama_2323	0.88	+0.2
2,787,733	+		Sama_2323	0.89	+0.7
2,787,751	+				-0.2
2,787,752	-				+0.3
2,787,752	-				+0.3
2,787,752	-				+0.2
2,787,792	+				+0.0
2,787,792	+				+0.2
2,787,792	+				-0.5
2,787,793	-				+0.5
2,787,793	-				+0.4
2,787,807	+				+0.0