Strain Fitness in Shewanella amazonensis SB2B around Sama_2314

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,779,039	-	flgH	Sama_2312	0.80	-1.3
2,779,039	-	flgH	Sama_2312	0.80	-3.1
2,779,039	-	flgH	Sama_2312	0.80	+0.6
2,779,082	+	flgH	Sama_2312	0.87	-2.1
2,779,082	+	flgH	Sama_2312	0.87	-0.7
2,779,086	-	flgH	Sama_2312	0.87	-1.3
2,779,102	-	flgH	Sama_2312	0.90	-0.1
2,779,102	-	flgH	Sama_2312	0.90	-0.1
2,779,102	-	flgH	Sama_2312	0.90	-1.3
2,779,116	+				-1.0
2,779,117	-				-0.8
2,779,155	+				-1.2
2,779,155	+				-0.7
2,779,156	-				-0.9
2,779,156	-				+0.1
2,779,156	-				+0.1
2,779,160	+				-0.9
2,779,160	+				-0.1
2,779,170	+				-0.3
2,779,184	+				+0.6
2,779,202	+				-0.6
2,779,202	+				-1.3
2,779,202	+				-0.6
2,779,250	+				-1.4
2,779,251	-				-0.9
2,779,251	-				-1.0
2,779,251	-				+0.0
2,779,251	-				-1.1
2,779,408	+	flgG	Sama_2313	0.29	+0.4
2,779,408	+	flgG	Sama_2313	0.29	-1.1
2,779,409	-	flgG	Sama_2313	0.29	-1.6
2,779,410	+	flgG	Sama_2313	0.29	-1.4
2,779,434	+	flgG	Sama_2313	0.32	-1.3
2,779,492	+	flgG	Sama_2313	0.39	-0.9
2,779,493	-	flgG	Sama_2313	0.39	-1.5
2,779,493	-	flgG	Sama_2313	0.39	+0.4
2,779,493	-	flgG	Sama_2313	0.39	-1.1
2,779,524	+	flgG	Sama_2313	0.43	-0.4
2,779,524	+	flgG	Sama_2313	0.43	-0.2
2,779,525	-	flgG	Sama_2313	0.43	-1.0
2,779,568	+	flgG	Sama_2313	0.49	-0.6
2,779,568	+	flgG	Sama_2313	0.49	-0.9
2,779,568	+	flgG	Sama_2313	0.49	-0.7
2,779,568	+	flgG	Sama_2313	0.49	-3.0
2,779,568	+	flgG	Sama_2313	0.49	-1.0
2,779,568	+	flgG	Sama_2313	0.49	-0.6
2,779,569	-	flgG	Sama_2313	0.49	-1.2
2,779,569	-	flgG	Sama_2313	0.49	-0.8
2,779,588	+	flgG	Sama_2313	0.51	+1.4
2,779,629	+	flgG	Sama_2313	0.57	-2.0
2,779,631	+	flgG	Sama_2313	0.57	-0.9
2,779,632	-	flgG	Sama_2313	0.57	+0.6
2,779,632	-	flgG	Sama_2313	0.57	+0.3
2,779,728	+	flgG	Sama_2313	0.69	-1.0
2,779,768	+	flgG	Sama_2313	0.74	-1.0
2,779,769	-	flgG	Sama_2313	0.74	-2.4
2,779,769	-	flgG	Sama_2313	0.74	-0.1
2,779,770	+	flgG	Sama_2313	0.74	-2.1
2,779,770	+	flgG	Sama_2313	0.74	-1.1
2,779,770	+	flgG	Sama_2313	0.74	-0.0
2,779,771	-	flgG	Sama_2313	0.75	-0.6
2,779,835	+	flgG	Sama_2313	0.83	+0.0
2,779,841	-	flgG	Sama_2313	0.83	-1.5
2,779,841	-	flgG	Sama_2313	0.83	-0.4
2,779,841	-	flgG	Sama_2313	0.83	-1.7
2,779,841	-	flgG	Sama_2313	0.83	-0.6
2,779,841	-	flgG	Sama_2313	0.83	-0.6
2,779,937	-				-1.8
2,779,937	-				-0.6
2,779,937	-				-1.5
2,779,947	+				-1.1
2,779,948	-				+0.9
2,779,948	-				-0.6
2,779,951	+				-3.1
2,779,951	+				-0.3
2,779,952	-				-1.4
2,779,952	-				-1.4
2,779,957	+				-0.9
2,779,958	-				-1.4
2,779,971	+				+0.2
2,779,972	-				-1.4
2,779,972	-				-0.6
2,779,972	-				-1.1
2,779,992	+				-0.7
2,779,992	+				+0.3
2,779,993	-				+0.4
2,779,996	+				-0.9
2,779,997	-				-0.6
2,780,048	-				-1.5
2,780,048	-				-1.0
2,780,112	+	flgF	Sama_2314	0.17	+0.0
2,780,112	+	flgF	Sama_2314	0.17	-0.6
2,780,272	-	flgF	Sama_2314	0.39	+0.1
2,780,295	+	flgF	Sama_2314	0.42	-1.8
2,780,295	+	flgF	Sama_2314	0.42	-0.9
2,780,295	+	flgF	Sama_2314	0.42	-1.0
2,780,432	+	flgF	Sama_2314	0.60	-0.3
2,780,432	+	flgF	Sama_2314	0.60	-1.4
2,780,432	+	flgF	Sama_2314	0.60	-1.1
2,780,432	+	flgF	Sama_2314	0.60	-3.6
2,780,433	-	flgF	Sama_2314	0.60	+0.9
2,780,433	-	flgF	Sama_2314	0.60	-0.6
2,780,514	+	flgF	Sama_2314	0.71	-0.3
2,780,709	+				-0.7
2,780,711	+				-0.9
2,780,712	-				-3.0
2,780,712	-				-0.7
2,780,748	+				+1.4
2,780,748	+				-0.9
2,780,748	+				-0.1
2,780,749	-				-0.1
2,780,823	+				-0.1
2,780,823	+				+0.1
2,780,823	+				-0.0
2,780,823	+				-1.3
2,780,823	+				+0.5
2,780,823	+				-0.3
2,780,823	+				+1.4
2,780,824	-				+0.6
2,780,824	-				+0.4
2,780,824	-				+0.7
2,780,824	-				+0.2
2,780,824	-				+0.2
2,780,824	-				+0.0
2,780,824	-				+0.2
2,780,824	-				+0.9
2,780,833	-				+0.1
2,780,844	-				-2.4
2,780,844	-				+0.9
2,780,930	-				-1.4
2,780,945	-				-0.7
2,780,945	-				-0.2
2,780,965	+				-0.7
2,780,966	-				-0.9
2,781,013	+				-0.5
2,781,014	-				-1.6
2,781,181	+	flgE	Sama_2315	0.21	-1.7
2,781,181	+	flgE	Sama_2315	0.21	+3.2
2,781,181	+	flgE	Sama_2315	0.21	-0.4
2,781,182	-	flgE	Sama_2315	0.21	-0.6
2,781,182	-	flgE	Sama_2315	0.21	+1.0
2,781,196	-	flgE	Sama_2315	0.22	-1.5
2,781,205	+	flgE	Sama_2315	0.23	-0.6
2,781,206	-	flgE	Sama_2315	0.23	-1.5
2,781,225	-	flgE	Sama_2315	0.24	-0.6
2,781,225	-	flgE	Sama_2315	0.24	+1.2
2,781,225	-	flgE	Sama_2315	0.24	+0.1
2,781,225	-	flgE	Sama_2315	0.24	-0.6
2,781,279	-	flgE	Sama_2315	0.28	-1.3
2,781,282	+	flgE	Sama_2315	0.28	-1.6
2,781,298	-	flgE	Sama_2315	0.30	+0.4
2,781,298	-	flgE	Sama_2315	0.30	-0.1
2,781,398	+	flgE	Sama_2315	0.37	-0.4
2,781,419	-	flgE	Sama_2315	0.39	-2.6
2,781,419	-	flgE	Sama_2315	0.39	-0.8
2,781,419	-	flgE	Sama_2315	0.39	+1.2
2,781,420	+	flgE	Sama_2315	0.39	-0.1
2,781,420	+	flgE	Sama_2315	0.39	-0.8
2,781,420	+	flgE	Sama_2315	0.39	-0.9
2,781,420	+	flgE	Sama_2315	0.39	-0.2
2,781,421	-	flgE	Sama_2315	0.39	-0.8
2,781,421	-	flgE	Sama_2315	0.39	-0.5
2,781,421	-	flgE	Sama_2315	0.39	-0.7
2,781,421	-	flgE	Sama_2315	0.39	-1.6
2,781,421	-	flgE	Sama_2315	0.39	+0.2
2,781,421	-	flgE	Sama_2315	0.39	+0.3
2,781,421	-	flgE	Sama_2315	0.39	-0.5
2,781,421	-	flgE	Sama_2315	0.39	+0.4
2,781,421	-	flgE	Sama_2315	0.39	+0.9
2,781,421	-	flgE	Sama_2315	0.39	-1.1
2,781,424	+	flgE	Sama_2315	0.39	+1.4
2,781,425	-	flgE	Sama_2315	0.39	-0.6
2,781,425	-	flgE	Sama_2315	0.39	+0.4
2,781,425	-	flgE	Sama_2315	0.39	+0.2
2,781,425	-	flgE	Sama_2315	0.39	-0.1
2,781,425	-	flgE	Sama_2315	0.39	-0.6
2,781,525	+	flgE	Sama_2315	0.46	-1.3
2,781,525	+	flgE	Sama_2315	0.46	-0.6
2,781,526	-	flgE	Sama_2315	0.46	+0.4
2,781,526	-	flgE	Sama_2315	0.46	-1.3
2,781,530	-	flgE	Sama_2315	0.47	-1.6
2,781,573	+	flgE	Sama_2315	0.50	-0.9
2,781,573	+	flgE	Sama_2315	0.50	-0.9
2,781,574	-	flgE	Sama_2315	0.50	-0.6
2,781,574	-	flgE	Sama_2315	0.50	-0.3
2,781,574	-	flgE	Sama_2315	0.50	+1.7
2,781,574	-	flgE	Sama_2315	0.50	-0.7
2,781,574	-	flgE	Sama_2315	0.50	+0.4
2,781,576	+	flgE	Sama_2315	0.50	-1.6
2,781,577	-	flgE	Sama_2315	0.50	-0.8
2,781,577	-	flgE	Sama_2315	0.50	-1.1
2,781,604	-	flgE	Sama_2315	0.52	-0.3
2,781,604	-	flgE	Sama_2315	0.52	-1.0
2,781,624	-	flgE	Sama_2315	0.54	-1.9
2,781,624	-	flgE	Sama_2315	0.54	-0.4
2,781,630	+	flgE	Sama_2315	0.54	-1.8
2,781,630	+	flgE	Sama_2315	0.54	-0.1
2,781,630	+	flgE	Sama_2315	0.54	-1.6
2,781,631	-	flgE	Sama_2315	0.54	-0.3
2,781,631	-	flgE	Sama_2315	0.54	-1.8
2,781,631	-	flgE	Sama_2315	0.54	-0.6
2,781,631	-	flgE	Sama_2315	0.54	-0.8
2,781,631	-	flgE	Sama_2315	0.54	-0.3
2,781,631	-	flgE	Sama_2315	0.54	+0.8
2,781,666	+	flgE	Sama_2315	0.57	-0.6
2,781,667	-	flgE	Sama_2315	0.57	-1.3
2,781,667	-	flgE	Sama_2315	0.57	+0.3
2,781,667	-	flgE	Sama_2315	0.57	-0.4
2,781,683	-	flgE	Sama_2315	0.58	-1.6
2,781,683	-	flgE	Sama_2315	0.58	-0.6