Strain Fitness in Shewanella amazonensis SB2B around Sama_2312

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,777,535	+	flgI	Sama_2311	0.13	-2.6
2,777,535	+	flgI	Sama_2311	0.13	-2.7
2,777,535	+	flgI	Sama_2311	0.13	-1.6
2,777,535	+	flgI	Sama_2311	0.13	-0.6
2,777,535	+	flgI	Sama_2311	0.13	-0.1
2,777,535	+	flgI	Sama_2311	0.13	+0.7
2,777,535	+	flgI	Sama_2311	0.13	+0.4
2,777,536	-	flgI	Sama_2311	0.13	-1.3
2,777,536	-	flgI	Sama_2311	0.13	-1.3
2,777,536	-	flgI	Sama_2311	0.13	-1.1
2,777,536	-	flgI	Sama_2311	0.13	-2.7
2,777,536	-	flgI	Sama_2311	0.13	-0.1
2,777,536	-	flgI	Sama_2311	0.13	-0.5
2,777,536	-	flgI	Sama_2311	0.13	-0.6
2,777,536	-	flgI	Sama_2311	0.13	+0.8
2,777,541	+	flgI	Sama_2311	0.14	-1.4
2,777,560	+	flgI	Sama_2311	0.15	+0.4
2,777,560	+	flgI	Sama_2311	0.15	-0.6
2,777,560	+	flgI	Sama_2311	0.15	-1.4
2,777,560	+	flgI	Sama_2311	0.15	-1.9
2,777,560	+	flgI	Sama_2311	0.15	+1.0
2,777,560	+	flgI	Sama_2311	0.15	-1.6
2,777,561	-	flgI	Sama_2311	0.15	-1.1
2,777,561	-	flgI	Sama_2311	0.15	-0.6
2,777,561	-	flgI	Sama_2311	0.15	-0.1
2,777,561	-	flgI	Sama_2311	0.15	+0.1
2,777,561	-	flgI	Sama_2311	0.15	-1.4
2,777,561	-	flgI	Sama_2311	0.15	-1.9
2,777,561	-	flgI	Sama_2311	0.15	+0.2
2,777,561	-	flgI	Sama_2311	0.15	-1.1
2,777,561	-	flgI	Sama_2311	0.15	-1.1
2,777,561	-	flgI	Sama_2311	0.15	-0.1
2,777,561	-	flgI	Sama_2311	0.15	-1.5
2,777,561	-	flgI	Sama_2311	0.15	+0.8
2,777,674	+	flgI	Sama_2311	0.26	-1.8
2,777,677	+	flgI	Sama_2311	0.26	-1.1
2,777,678	-	flgI	Sama_2311	0.26	-0.4
2,777,678	-	flgI	Sama_2311	0.26	-1.6
2,777,678	-	flgI	Sama_2311	0.26	-0.3
2,777,701	+	flgI	Sama_2311	0.28	-0.1
2,777,702	-	flgI	Sama_2311	0.28	+0.2
2,777,702	-	flgI	Sama_2311	0.28	-1.0
2,777,816	+	flgI	Sama_2311	0.39	-0.9
2,777,816	+	flgI	Sama_2311	0.39	-1.9
2,777,816	+	flgI	Sama_2311	0.39	-0.9
2,777,816	+	flgI	Sama_2311	0.39	-0.0
2,777,816	+	flgI	Sama_2311	0.39	-0.7
2,777,816	+	flgI	Sama_2311	0.39	-1.8
2,777,817	-	flgI	Sama_2311	0.39	-0.1
2,777,817	-	flgI	Sama_2311	0.39	-1.1
2,777,817	-	flgI	Sama_2311	0.39	-1.6
2,777,817	-	flgI	Sama_2311	0.39	-0.6
2,777,817	-	flgI	Sama_2311	0.39	-0.8
2,777,931	+	flgI	Sama_2311	0.49	-0.6
2,777,932	-	flgI	Sama_2311	0.49	-1.4
2,778,012	+	flgI	Sama_2311	0.57	-1.1
2,778,021	+	flgI	Sama_2311	0.58	-1.7
2,778,021	+	flgI	Sama_2311	0.58	-0.5
2,778,090	-	flgI	Sama_2311	0.64	-1.0
2,778,112	-	flgI	Sama_2311	0.66	-0.6
2,778,160	+	flgI	Sama_2311	0.70	+0.2
2,778,260	-	flgI	Sama_2311	0.79	-0.1
2,778,277	-	flgI	Sama_2311	0.81	-2.9
2,778,304	-	flgI	Sama_2311	0.84	-1.4
2,778,304	-	flgI	Sama_2311	0.84	-0.3
2,778,321	-	flgI	Sama_2311	0.85	-1.1
2,778,414	+				-2.5
2,778,415	-				-2.1
2,778,578	+	flgH	Sama_2312	0.12	+0.3
2,778,579	-	flgH	Sama_2312	0.12	-1.5
2,778,610	+	flgH	Sama_2312	0.17	-0.7
2,778,610	+	flgH	Sama_2312	0.17	-1.7
2,778,610	+	flgH	Sama_2312	0.17	-0.9
2,778,611	-	flgH	Sama_2312	0.17	-2.1
2,778,611	-	flgH	Sama_2312	0.17	-2.6
2,778,611	-	flgH	Sama_2312	0.17	-1.0
2,778,611	-	flgH	Sama_2312	0.17	-1.9
2,778,756	+	flgH	Sama_2312	0.39	-1.6
2,778,756	+	flgH	Sama_2312	0.39	+0.4
2,778,756	+	flgH	Sama_2312	0.39	+1.4
2,778,757	-	flgH	Sama_2312	0.39	+0.4
2,778,757	-	flgH	Sama_2312	0.39	-0.6
2,778,846	-	flgH	Sama_2312	0.52	-0.7
2,779,039	-	flgH	Sama_2312	0.80	-1.3
2,779,039	-	flgH	Sama_2312	0.80	-3.1
2,779,039	-	flgH	Sama_2312	0.80	+0.6
2,779,082	+	flgH	Sama_2312	0.87	-2.1
2,779,082	+	flgH	Sama_2312	0.87	-0.7
2,779,086	-	flgH	Sama_2312	0.87	-1.3
2,779,102	-	flgH	Sama_2312	0.90	-0.1
2,779,102	-	flgH	Sama_2312	0.90	-0.1
2,779,102	-	flgH	Sama_2312	0.90	-1.3
2,779,116	+				-1.0
2,779,117	-				-0.8
2,779,155	+				-1.2
2,779,155	+				-0.7
2,779,156	-				-0.9
2,779,156	-				+0.1
2,779,156	-				+0.1
2,779,160	+				-0.9
2,779,160	+				-0.1
2,779,170	+				-0.3
2,779,184	+				+0.6
2,779,202	+				-0.6
2,779,202	+				-1.3
2,779,202	+				-0.6
2,779,250	+				-1.4
2,779,251	-				-0.9
2,779,251	-				-1.0
2,779,251	-				+0.0
2,779,251	-				-1.1
2,779,408	+	flgG	Sama_2313	0.29	+0.4
2,779,408	+	flgG	Sama_2313	0.29	-1.1
2,779,409	-	flgG	Sama_2313	0.29	-1.6
2,779,410	+	flgG	Sama_2313	0.29	-1.4
2,779,434	+	flgG	Sama_2313	0.32	-1.3
2,779,492	+	flgG	Sama_2313	0.39	-0.9
2,779,493	-	flgG	Sama_2313	0.39	-1.5
2,779,493	-	flgG	Sama_2313	0.39	+0.4
2,779,493	-	flgG	Sama_2313	0.39	-1.1
2,779,524	+	flgG	Sama_2313	0.43	-0.4
2,779,524	+	flgG	Sama_2313	0.43	-0.2
2,779,525	-	flgG	Sama_2313	0.43	-1.0
2,779,568	+	flgG	Sama_2313	0.49	-0.6
2,779,568	+	flgG	Sama_2313	0.49	-0.9
2,779,568	+	flgG	Sama_2313	0.49	-0.7
2,779,568	+	flgG	Sama_2313	0.49	-3.0
2,779,568	+	flgG	Sama_2313	0.49	-1.0
2,779,568	+	flgG	Sama_2313	0.49	-0.6
2,779,569	-	flgG	Sama_2313	0.49	-1.2
2,779,569	-	flgG	Sama_2313	0.49	-0.8
2,779,588	+	flgG	Sama_2313	0.51	+1.4
2,779,629	+	flgG	Sama_2313	0.57	-2.0
2,779,631	+	flgG	Sama_2313	0.57	-0.9
2,779,632	-	flgG	Sama_2313	0.57	+0.6
2,779,632	-	flgG	Sama_2313	0.57	+0.3
2,779,728	+	flgG	Sama_2313	0.69	-1.0
2,779,768	+	flgG	Sama_2313	0.74	-1.0
2,779,769	-	flgG	Sama_2313	0.74	-2.4
2,779,769	-	flgG	Sama_2313	0.74	-0.1
2,779,770	+	flgG	Sama_2313	0.74	-2.1
2,779,770	+	flgG	Sama_2313	0.74	-1.1
2,779,770	+	flgG	Sama_2313	0.74	-0.0
2,779,771	-	flgG	Sama_2313	0.75	-0.6
2,779,835	+	flgG	Sama_2313	0.83	+0.0
2,779,841	-	flgG	Sama_2313	0.83	-1.5
2,779,841	-	flgG	Sama_2313	0.83	-0.4
2,779,841	-	flgG	Sama_2313	0.83	-1.7
2,779,841	-	flgG	Sama_2313	0.83	-0.6
2,779,841	-	flgG	Sama_2313	0.83	-0.6
2,779,937	-				-1.8
2,779,937	-				-0.6
2,779,937	-				-1.5
2,779,947	+				-1.1
2,779,948	-				+0.9
2,779,948	-				-0.6
2,779,951	+				-3.1
2,779,951	+				-0.3
2,779,952	-				-1.4
2,779,952	-				-1.4
2,779,957	+				-0.9
2,779,958	-				-1.4
2,779,971	+				+0.2
2,779,972	-				-1.4
2,779,972	-				-0.6
2,779,972	-				-1.1
2,779,992	+				-0.7
2,779,992	+				+0.3
2,779,993	-				+0.4
2,779,996	+				-0.9
2,779,997	-				-0.6
2,780,048	-				-1.5
2,780,048	-				-1.0
2,780,112	+	flgF	Sama_2314	0.17	+0.0
2,780,112	+	flgF	Sama_2314	0.17	-0.6