Strain Fitness in Shewanella amazonensis SB2B around Sama_2293

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,757,329	+		Sama_2292	0.51	-1.2
2,757,330	-		Sama_2292	0.51	-1.0
2,757,330	-		Sama_2292	0.51	-1.2
2,757,421	+		Sama_2292	0.56	-0.6
2,757,563	-		Sama_2292	0.64	+1.5
2,757,644	-		Sama_2292	0.68	-0.6
2,757,644	-		Sama_2292	0.68	-0.6
2,757,644	-		Sama_2292	0.68	-1.8
2,757,646	+		Sama_2292	0.68	-1.4
2,757,646	+		Sama_2292	0.68	-1.3
2,757,647	-		Sama_2292	0.68	-0.6
2,757,647	-		Sama_2292	0.68	+0.1
2,757,671	-		Sama_2292	0.70	-0.1
2,757,917	+		Sama_2292	0.84	+0.2
2,758,066	+				+0.3
2,758,233	+				-0.2
2,758,233	+				-2.9
2,758,233	+				-0.3
2,758,233	+				-2.9
2,758,233	+				+0.6
2,758,234	-				-0.1
2,758,234	-				+0.4
2,758,234	-				+0.2
2,758,240	-				+0.4
2,758,286	+				-1.3
2,758,319	+				+1.2
2,758,328	+				+0.7
2,758,328	+				+2.0
2,758,329	-				-0.4
2,758,329	-				+1.2
2,758,429	-		Sama_2293	0.23	-0.9
2,758,534	+		Sama_2293	0.46	-1.5
2,758,534	+		Sama_2293	0.46	-1.6
2,758,534	+		Sama_2293	0.46	-0.9
2,758,557	+		Sama_2293	0.51	-1.7
2,758,557	+		Sama_2293	0.51	-1.8
2,758,577	+		Sama_2293	0.56	-0.9
2,758,578	-		Sama_2293	0.56	-0.6
2,758,578	-		Sama_2293	0.56	-1.6
2,758,580	+		Sama_2293	0.57	-0.7
2,758,581	-		Sama_2293	0.57	-0.2
2,758,626	+		Sama_2293	0.67	-2.4
2,758,626	+		Sama_2293	0.67	-0.2
2,758,626	+		Sama_2293	0.67	+0.0
2,758,626	+		Sama_2293	0.67	-2.2
2,758,627	-		Sama_2293	0.67	-2.3
2,758,627	-		Sama_2293	0.67	+0.2
2,758,627	-		Sama_2293	0.67	+0.3
2,758,627	-		Sama_2293	0.67	+0.4
2,758,627	-		Sama_2293	0.67	-1.9
2,758,627	-		Sama_2293	0.67	-0.7
2,758,628	+		Sama_2293	0.67	-0.0
2,758,628	+		Sama_2293	0.67	-2.0
2,758,628	+		Sama_2293	0.67	-0.8
2,758,629	-		Sama_2293	0.68	-2.2
2,758,779	-				-0.3
2,758,785	+				-1.4
2,758,786	-				+1.0
2,758,786	-				+0.1
2,758,786	-				-2.4
2,758,902	+				-2.2
2,758,902	+				-2.4
2,758,926	-	fliI	Sama_2294	0.11	-1.8
2,758,961	+	fliI	Sama_2294	0.14	-1.1
2,758,970	+	fliI	Sama_2294	0.14	-0.4
2,758,970	+	fliI	Sama_2294	0.14	-1.6
2,758,971	-	fliI	Sama_2294	0.14	-1.0
2,759,101	+	fliI	Sama_2294	0.24	+0.7
2,759,101	+	fliI	Sama_2294	0.24	-1.2
2,759,101	+	fliI	Sama_2294	0.24	+1.2
2,759,101	+	fliI	Sama_2294	0.24	-0.8
2,759,101	+	fliI	Sama_2294	0.24	-0.6
2,759,101	+	fliI	Sama_2294	0.24	-1.2
2,759,101	+	fliI	Sama_2294	0.24	-1.4
2,759,101	+	fliI	Sama_2294	0.24	-0.3
2,759,102	-	fliI	Sama_2294	0.24	-2.1
2,759,102	-	fliI	Sama_2294	0.24	-0.4
2,759,102	-	fliI	Sama_2294	0.24	+1.0
2,759,170	+	fliI	Sama_2294	0.29	-0.2
2,759,171	-	fliI	Sama_2294	0.29	-1.5
2,759,171	-	fliI	Sama_2294	0.29	-0.2
2,759,171	-	fliI	Sama_2294	0.29	-2.7
2,759,264	+	fliI	Sama_2294	0.36	-1.5
2,759,338	-	fliI	Sama_2294	0.42	-0.9
2,759,338	-	fliI	Sama_2294	0.42	-1.9
2,759,343	+	fliI	Sama_2294	0.42	-2.5
2,759,344	-	fliI	Sama_2294	0.42	+0.2
2,759,344	-	fliI	Sama_2294	0.42	-0.8
2,759,358	+	fliI	Sama_2294	0.43	-0.3
2,759,358	+	fliI	Sama_2294	0.43	-0.9
2,759,358	+	fliI	Sama_2294	0.43	+0.3
2,759,358	+	fliI	Sama_2294	0.43	-0.6
2,759,359	-	fliI	Sama_2294	0.43	-1.5
2,759,359	-	fliI	Sama_2294	0.43	+0.3
2,759,359	-	fliI	Sama_2294	0.43	-0.6
2,759,359	-	fliI	Sama_2294	0.43	-1.2
2,759,378	+	fliI	Sama_2294	0.45	-0.6
2,759,395	-	fliI	Sama_2294	0.46	-0.6
2,759,497	-	fliI	Sama_2294	0.54	-1.1
2,759,592	+	fliI	Sama_2294	0.61	-1.6
2,759,753	-	fliI	Sama_2294	0.73	-1.0