Strain Fitness in Shewanella amazonensis SB2B around Sama_2290

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,753,759	+	fliP	Sama_2287	0.71	-2.2
2,753,759	+	fliP	Sama_2287	0.71	-0.1
2,753,760	-	fliP	Sama_2287	0.71	-0.9
2,753,760	-	fliP	Sama_2287	0.71	-0.0
2,753,788	+	fliP	Sama_2287	0.75	-2.0
2,753,961	-				-0.6
2,754,048	+		Sama_2288	0.21	-1.3
2,754,048	+		Sama_2288	0.21	-2.6
2,754,052	+		Sama_2288	0.22	-0.6
2,754,052	+		Sama_2288	0.22	+1.0
2,754,052	+		Sama_2288	0.22	-0.8
2,754,052	+		Sama_2288	0.22	+1.4
2,754,053	-		Sama_2288	0.22	+0.0
2,754,053	-		Sama_2288	0.22	-1.4
2,754,053	-		Sama_2288	0.22	-1.1
2,754,053	-		Sama_2288	0.22	-1.8
2,754,053	-		Sama_2288	0.22	-0.2
2,754,053	-		Sama_2288	0.22	-1.2
2,754,089	+		Sama_2288	0.31	+0.8
2,754,089	+		Sama_2288	0.31	-2.3
2,754,090	-		Sama_2288	0.32	-0.9
2,754,206	+		Sama_2288	0.63	+0.2
2,754,206	+		Sama_2288	0.63	+1.1
2,754,206	+		Sama_2288	0.63	-0.6
2,754,206	+		Sama_2288	0.63	-0.9
2,754,207	-		Sama_2288	0.63	-1.6
2,754,207	-		Sama_2288	0.63	+0.2
2,754,207	-		Sama_2288	0.63	+0.2
2,754,207	-		Sama_2288	0.63	-0.1
2,754,207	-		Sama_2288	0.63	-1.2
2,754,207	-		Sama_2288	0.63	-1.1
2,754,236	-		Sama_2288	0.71	-0.4
2,754,331	+				-0.8
2,754,338	-				+0.9
2,754,365	-				+0.4
2,754,464	+	fliN	Sama_2289	0.27	-2.4
2,754,558	-	fliN	Sama_2289	0.52	+0.4
2,754,558	-	fliN	Sama_2289	0.52	+0.1
2,754,558	-	fliN	Sama_2289	0.52	+2.0
2,754,559	+	fliN	Sama_2289	0.52	-0.3
2,754,559	+	fliN	Sama_2289	0.52	-1.3
2,754,560	-	fliN	Sama_2289	0.53	-1.1
2,754,560	-	fliN	Sama_2289	0.53	-2.6
2,754,560	-	fliN	Sama_2289	0.53	-0.9
2,754,560	-	fliN	Sama_2289	0.53	-1.4
2,754,560	-	fliN	Sama_2289	0.53	-1.6
2,754,560	-	fliN	Sama_2289	0.53	-1.4
2,754,560	-	fliN	Sama_2289	0.53	-0.6
2,754,578	+	fliN	Sama_2289	0.57	-0.9
2,754,579	-	fliN	Sama_2289	0.58	-0.8
2,754,732	-				-2.4
2,754,743	-				+0.1
2,754,764	-				-0.8
2,754,764	-				+0.1
2,754,764	-				+0.2
2,754,764	-				-0.4
2,754,798	-				-1.2
2,754,840	-				-2.7
2,754,886	-	fliM	Sama_2290	0.13	-1.5
2,754,918	+	fliM	Sama_2290	0.16	-1.3
2,754,918	+	fliM	Sama_2290	0.16	-0.6
2,754,919	-	fliM	Sama_2290	0.17	+0.1
2,754,981	-	fliM	Sama_2290	0.23	-1.2
2,755,040	-	fliM	Sama_2290	0.28	-1.9
2,755,040	-	fliM	Sama_2290	0.28	+0.4
2,755,076	-	fliM	Sama_2290	0.32	-1.9
2,755,129	-	fliM	Sama_2290	0.37	-1.7
2,755,196	+	fliM	Sama_2290	0.43	-0.2
2,755,205	-	fliM	Sama_2290	0.44	-1.3
2,755,291	+	fliM	Sama_2290	0.53	+0.2
2,755,292	-	fliM	Sama_2290	0.53	-2.0
2,755,294	-	fliM	Sama_2290	0.53	+0.2
2,755,414	+	fliM	Sama_2290	0.65	-0.6
2,755,414	+	fliM	Sama_2290	0.65	-3.6
2,755,442	-	fliM	Sama_2290	0.67	+1.0
2,755,477	+	fliM	Sama_2290	0.71	-0.2
2,755,505	-	fliM	Sama_2290	0.73	-0.4
2,755,512	+	fliM	Sama_2290	0.74	-0.0
2,755,513	-	fliM	Sama_2290	0.74	-1.9
2,755,513	-	fliM	Sama_2290	0.74	-0.4
2,755,513	-	fliM	Sama_2290	0.74	-2.2
2,755,544	-	fliM	Sama_2290	0.77	-1.9
2,755,573	+	fliM	Sama_2290	0.80	-2.2
2,755,586	+	fliM	Sama_2290	0.81	-3.2
2,755,587	-	fliM	Sama_2290	0.81	-0.9
2,755,587	-	fliM	Sama_2290	0.81	-0.6
2,755,587	-	fliM	Sama_2290	0.81	-0.6
2,755,587	-	fliM	Sama_2290	0.81	-1.4
2,755,762	+				-2.1
2,755,766	+				-2.2
2,755,766	+				-0.6
2,755,766	-				+0.4
2,755,800	-				-0.3
2,755,805	+				-2.3
2,755,806	-				-0.6
2,755,806	-				-0.6
2,755,806	-				-0.0
2,755,818	-				+1.1
2,755,818	-				-1.6
2,755,885	-	fliL	Sama_2291	0.13	-1.0
2,755,885	-	fliL	Sama_2291	0.13	-0.2
2,755,885	-	fliL	Sama_2291	0.13	-0.6
2,755,888	-	fliL	Sama_2291	0.14	-0.9
2,755,892	-	fliL	Sama_2291	0.14	+0.3
2,755,892	-	fliL	Sama_2291	0.14	+0.4
2,755,892	-	fliL	Sama_2291	0.14	-0.5
2,755,916	-	fliL	Sama_2291	0.19	+0.8
2,755,916	-	fliL	Sama_2291	0.19	+0.4
2,755,916	-	fliL	Sama_2291	0.19	-1.0
2,756,014	-	fliL	Sama_2291	0.38	-0.4
2,756,014	-	fliL	Sama_2291	0.38	-0.6
2,756,124	-	fliL	Sama_2291	0.58	+0.2
2,756,124	-	fliL	Sama_2291	0.58	+0.8
2,756,124	-	fliL	Sama_2291	0.58	-0.3
2,756,249	-	fliL	Sama_2291	0.82	+0.1
2,756,293	-				+0.0
2,756,293	-				+1.8
2,756,293	-				+1.2
2,756,293	-				+1.0
2,756,311	-				+0.0
2,756,324	-				-0.1
2,756,324	-				-0.4
2,756,404	-				+0.2
2,756,404	-				+0.1
2,756,404	-				-0.2
2,756,404	-				+0.4
2,756,416	-				-0.3
2,756,418	-				+0.2
2,756,418	-				-0.9
2,756,418	-				+0.4
2,756,418	-				-0.3
2,756,418	-				+0.2
2,756,418	-				+0.1
2,756,423	-				+1.2
2,756,423	-				-1.0
2,756,431	-				-0.5
2,756,437	-				-0.3
2,756,437	-				-0.4
2,756,437	-				-0.1
2,756,437	-				-0.6
2,756,440	-				-0.2
2,756,440	-				-0.3
2,756,440	-				-1.4
2,756,445	-				-0.3
2,756,445	-				-1.2
2,756,445	-				-2.3
2,756,580	-				-0.4
2,756,652	-		Sama_2292	0.13	-1.2
2,756,652	-		Sama_2292	0.13	-1.2
2,756,708	+		Sama_2292	0.16	+1.3
2,756,771	+		Sama_2292	0.19	-0.8
2,756,771	+		Sama_2292	0.19	-0.9
2,756,772	-		Sama_2292	0.19	-2.4