Strain Fitness in Shewanella amazonensis SB2B around Sama_2282

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,746,430	-	fliA	Sama_2280	0.84	-0.4
2,746,430	-	fliA	Sama_2280	0.84	-0.8
2,746,455	+	fliA	Sama_2280	0.87	-2.6
2,746,455	+	fliA	Sama_2280	0.87	-0.4
2,746,456	-	fliA	Sama_2280	0.88	+1.2
2,746,456	-	fliA	Sama_2280	0.88	-0.4
2,746,456	-	fliA	Sama_2280	0.88	-1.7
2,746,456	-	fliA	Sama_2280	0.88	-0.7
2,746,456	-	fliA	Sama_2280	0.88	-1.5
2,746,487	+				+0.4
2,746,509	+				-0.7
2,746,510	-				-2.1
2,746,525	-				-0.1
2,746,525	-				-0.8
2,746,526	+				-0.4
2,746,527	-				-0.9
2,746,527	-				-1.2
2,746,540	-				-0.1
2,746,540	-				-0.3
2,746,578	-				-0.9
2,746,578	-				-1.2
2,746,628	-		Sama_2281	0.10	-0.6
2,746,646	-		Sama_2281	0.12	-0.7
2,746,646	-		Sama_2281	0.12	-1.3
2,746,663	-		Sama_2281	0.14	-1.2
2,746,698	-		Sama_2281	0.18	-1.2
2,746,698	-		Sama_2281	0.18	-2.6
2,746,715	-		Sama_2281	0.20	-0.3
2,746,719	-		Sama_2281	0.21	-1.2
2,746,838	-		Sama_2281	0.34	-1.4
2,746,847	-		Sama_2281	0.35	-1.7
2,746,847	-		Sama_2281	0.35	-0.9
2,746,847	-		Sama_2281	0.35	-1.2
2,746,941	-		Sama_2281	0.46	-1.6
2,746,941	-		Sama_2281	0.46	-0.6
2,746,941	-		Sama_2281	0.46	-1.0
2,746,941	-		Sama_2281	0.46	-2.7
2,746,941	-		Sama_2281	0.46	-2.2
2,746,941	-		Sama_2281	0.46	-1.2
2,746,944	-		Sama_2281	0.46	-2.0
2,746,944	-		Sama_2281	0.46	-2.0
2,746,944	-		Sama_2281	0.46	-2.9
2,747,018	-		Sama_2281	0.54	-1.6
2,747,114	-		Sama_2281	0.65	+0.4
2,747,124	-		Sama_2281	0.66	-1.1
2,747,124	-		Sama_2281	0.66	-3.5
2,747,184	-		Sama_2281	0.73	-1.9
2,747,300	-		Sama_2281	0.86	-2.1
2,747,374	-				+0.4
2,747,390	-				+1.0
2,747,420	-				-1.5
2,747,426	-				-0.2
2,747,460	-				+1.8
2,747,460	-				-0.8
2,747,460	-				-1.2
2,747,460	-				-0.3
2,747,460	-				-0.6
2,747,460	-				-0.2
2,747,460	-				-0.3
2,747,460	-				+0.0
2,747,460	-				+0.6
2,747,460	-				-1.3
2,747,460	-				-0.6
2,747,544	-				-0.7
2,747,605	-	flhF	Sama_2282	0.13	-1.3
2,747,605	-	flhF	Sama_2282	0.13	-0.5
2,747,653	-	flhF	Sama_2282	0.16	-0.3
2,747,653	-	flhF	Sama_2282	0.16	-0.8
2,747,827	-	flhF	Sama_2282	0.29	+0.0
2,747,827	-	flhF	Sama_2282	0.29	-0.7
2,747,827	-	flhF	Sama_2282	0.29	-1.3
2,747,827	-	flhF	Sama_2282	0.29	-1.4
2,747,827	-	flhF	Sama_2282	0.29	-0.6
2,747,827	-	flhF	Sama_2282	0.29	-2.0
2,747,827	-	flhF	Sama_2282	0.29	+0.2
2,747,827	-	flhF	Sama_2282	0.29	+0.1
2,747,833	-	flhF	Sama_2282	0.29	-0.3
2,747,836	-	flhF	Sama_2282	0.30	-0.6
2,747,836	-	flhF	Sama_2282	0.30	-1.5
2,747,836	-	flhF	Sama_2282	0.30	-1.3
2,747,836	-	flhF	Sama_2282	0.30	-1.6
2,747,836	-	flhF	Sama_2282	0.30	-2.2
2,747,836	-	flhF	Sama_2282	0.30	-1.2
2,748,030	-	flhF	Sama_2282	0.44	-1.3
2,748,088	-	flhF	Sama_2282	0.48	-2.5
2,748,088	-	flhF	Sama_2282	0.48	-2.6
2,748,093	-	flhF	Sama_2282	0.48	-1.6
2,748,164	-	flhF	Sama_2282	0.53	-0.1
2,748,164	-	flhF	Sama_2282	0.53	-0.9
2,748,164	-	flhF	Sama_2282	0.53	-0.6
2,748,304	-	flhF	Sama_2282	0.63	-2.5
2,748,393	-	flhF	Sama_2282	0.70	-0.8
2,748,579	-	flhF	Sama_2282	0.83	-1.7
2,748,579	-	flhF	Sama_2282	0.83	-0.6
2,748,612	-	flhF	Sama_2282	0.85	-2.4
2,748,622	-	flhF	Sama_2282	0.86	-0.9
2,748,622	-	flhF	Sama_2282	0.86	-1.2
2,748,622	-	flhF	Sama_2282	0.86	-0.6
2,748,786	-				-2.9
2,748,964	-				-1.2
2,749,117	-	flhA	Sama_2283	0.14	-2.3
2,749,117	-	flhA	Sama_2283	0.14	-1.2
2,749,169	+	flhA	Sama_2283	0.16	-0.1
2,749,170	-	flhA	Sama_2283	0.16	+0.1
2,749,178	+	flhA	Sama_2283	0.17	-1.8
2,749,197	+	flhA	Sama_2283	0.18	-2.7
2,749,202	-	flhA	Sama_2283	0.18	+0.2
2,749,225	+	flhA	Sama_2283	0.19	-2.2
2,749,225	+	flhA	Sama_2283	0.19	-1.9
2,749,226	-	flhA	Sama_2283	0.19	-1.8
2,749,226	-	flhA	Sama_2283	0.19	-1.0
2,749,226	-	flhA	Sama_2283	0.19	-1.3
2,749,246	-	flhA	Sama_2283	0.20	-1.2
2,749,246	-	flhA	Sama_2283	0.20	-0.9
2,749,246	-	flhA	Sama_2283	0.20	-2.2
2,749,246	-	flhA	Sama_2283	0.20	-2.2
2,749,280	+	flhA	Sama_2283	0.22	-1.6
2,749,281	-	flhA	Sama_2283	0.22	-0.8
2,749,389	+	flhA	Sama_2283	0.27	-1.9
2,749,390	-	flhA	Sama_2283	0.27	-1.2
2,749,390	-	flhA	Sama_2283	0.27	+0.7
2,749,390	-	flhA	Sama_2283	0.27	-0.1
2,749,399	+	flhA	Sama_2283	0.27	-0.7
2,749,400	-	flhA	Sama_2283	0.27	-0.9
2,749,422	-	flhA	Sama_2283	0.28	-3.0
2,749,422	-	flhA	Sama_2283	0.28	-1.6
2,749,561	-	flhA	Sama_2283	0.35	-0.4
2,749,641	+	flhA	Sama_2283	0.39	-2.9
2,749,746	+	flhA	Sama_2283	0.44	+1.0
2,749,746	+	flhA	Sama_2283	0.44	+0.1
2,749,746	+	flhA	Sama_2283	0.44	-1.7
2,749,746	+	flhA	Sama_2283	0.44	-1.0
2,749,747	-	flhA	Sama_2283	0.44	-1.9
2,749,747	-	flhA	Sama_2283	0.44	-0.7
2,749,747	-	flhA	Sama_2283	0.44	-1.9
2,749,747	-	flhA	Sama_2283	0.44	+0.3
2,749,747	-	flhA	Sama_2283	0.44	-0.7
2,749,747	-	flhA	Sama_2283	0.44	-1.6
2,749,747	-	flhA	Sama_2283	0.44	-2.1
2,749,747	-	flhA	Sama_2283	0.44	-1.6