Strain Fitness in Shewanella amazonensis SB2B around Sama_2251

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,713,553	-		Sama_2249	0.72	-0.3
2,713,592	-		Sama_2249	0.77	-1.0
2,713,592	-		Sama_2249	0.77	-1.2
2,713,608	-		Sama_2249	0.78	-0.9
2,713,608	-		Sama_2249	0.78	-0.6
2,713,664	+		Sama_2249	0.84	+0.4
2,713,665	-		Sama_2249	0.85	-0.2
2,713,854	-				+0.2
2,713,990	-		Sama_2250	0.25	+0.8
2,713,990	-		Sama_2250	0.25	+1.2
2,714,056	-		Sama_2250	0.34	-0.2
2,714,113	-		Sama_2250	0.42	-0.4
2,714,113	-		Sama_2250	0.42	-0.2
2,714,134	-		Sama_2250	0.45	-0.1
2,714,137	-		Sama_2250	0.45	-0.6
2,714,368	-		Sama_2250	0.77	-0.3
2,714,472	-				-0.6
2,714,516	-				-1.6
2,714,590	-				-1.6
2,714,628	-		Sama_2251	0.11	-1.6
2,714,638	-		Sama_2251	0.12	-1.6
2,714,692	-		Sama_2251	0.19	-0.3
2,714,694	-		Sama_2251	0.19	-1.2
2,714,710	-		Sama_2251	0.21	-2.2
2,714,728	-		Sama_2251	0.23	-0.6
2,714,742	-		Sama_2251	0.24	-0.5
2,714,751	-		Sama_2251	0.25	-1.1
2,714,770	-		Sama_2251	0.28	-1.2
2,714,770	-		Sama_2251	0.28	-0.6
2,714,898	-		Sama_2251	0.43	-3.4
2,714,898	-		Sama_2251	0.43	-0.7
2,714,901	-		Sama_2251	0.43	-0.2
2,714,901	-		Sama_2251	0.43	-0.4
2,714,980	-		Sama_2251	0.52	-0.3
2,715,369	-				+1.0
2,715,445	-				+1.4
2,715,450	-				+0.4
2,715,662	-		Sama_2252	0.43	-0.2
2,715,684	+		Sama_2252	0.46	-0.3
2,715,907	-		Sama_2252	0.82	-0.9
2,716,003	-				-2.0
2,716,006	-				-0.4
2,716,011	-				+1.2
2,716,014	-				-1.5
2,716,121	-				-1.2
2,716,227	-		Sama_2253	0.18	-0.3
2,716,227	-		Sama_2253	0.18	-0.6
2,716,272	-		Sama_2253	0.22	+1.0
2,716,272	-		Sama_2253	0.22	-2.6
2,716,347	-		Sama_2253	0.28	-2.2