Strain Fitness in Shewanella amazonensis SB2B around Sama_1934

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,359,823	+		Sama_1933	0.19	-0.2
2,359,824	-		Sama_1933	0.19	-0.6
2,359,826	-		Sama_1933	0.19	+2.5
2,360,124	-		Sama_1933	0.46	-1.8
2,360,128	+		Sama_1933	0.46	-1.2
2,360,191	-		Sama_1933	0.52	+0.1
2,360,255	-		Sama_1933	0.57	-1.4
2,360,375	-		Sama_1933	0.68	-0.4
2,360,499	-		Sama_1933	0.79	-0.7
2,360,539	-		Sama_1933	0.83	+0.1
2,360,563	-		Sama_1933	0.85	+0.2
2,360,577	-		Sama_1933	0.86	-0.5
2,360,587	+		Sama_1933	0.87	-0.4
2,360,588	-		Sama_1933	0.87	-0.8
2,360,599	-		Sama_1933	0.88	+1.4
2,360,614	+		Sama_1933	0.90	+0.4
2,360,614	+		Sama_1933	0.90	-1.1
2,360,617	+		Sama_1933	0.90	+0.0
2,360,617	+		Sama_1933	0.90	-1.1
2,360,618	-				-1.4
2,360,618	-				+1.4
2,360,618	-				-0.7
2,360,618	-				-1.9
2,360,621	+				-0.7
2,360,672	-				+0.8
2,360,709	+				-1.4
2,360,710	-				-0.6
2,360,744	-				-0.0
2,360,762	-				+1.4
2,360,790	-				-0.2
2,360,803	-				-0.8
2,360,818	-				-1.2
2,360,854	-				+0.8
2,360,858	-				-1.6
2,360,858	-				-0.8
2,360,883	+				+0.2
2,360,893	-				-0.3
2,360,893	-				-1.4
2,360,894	+				-0.9
2,360,925	+				+0.2
2,360,926	-				-2.0
2,360,926	-				-1.4
2,360,926	-				-0.6
2,361,119	+		Sama_1934	0.20	-1.6
2,361,120	-		Sama_1934	0.20	+0.2
2,361,144	-		Sama_1934	0.21	-0.1
2,361,182	-		Sama_1934	0.23	-0.7
2,361,182	-		Sama_1934	0.23	-1.6
2,361,182	-		Sama_1934	0.23	+0.2
2,361,182	-		Sama_1934	0.23	-0.8
2,361,331	-		Sama_1934	0.32	-0.8
2,361,342	-		Sama_1934	0.33	-1.8
2,361,356	+		Sama_1934	0.34	-2.9
2,361,356	+		Sama_1934	0.34	-0.5
2,361,399	-		Sama_1934	0.36	-1.8
2,361,538	-		Sama_1934	0.45	-2.8
2,361,546	+		Sama_1934	0.45	-2.4
2,361,593	-		Sama_1934	0.48	-0.1
2,361,622	-		Sama_1934	0.50	+0.8
2,361,622	-		Sama_1934	0.50	-1.3
2,361,625	-		Sama_1934	0.50	+0.2
2,361,646	-		Sama_1934	0.51	-1.4
2,361,764	-		Sama_1934	0.58	-0.3
2,361,816	+		Sama_1934	0.61	-0.5
2,361,849	+		Sama_1934	0.63	-0.9
2,361,849	+		Sama_1934	0.63	+0.2
2,361,850	-		Sama_1934	0.63	-1.6
2,361,850	-		Sama_1934	0.63	-0.8
2,361,850	-		Sama_1934	0.63	-0.8
2,361,850	-		Sama_1934	0.63	-1.8
2,361,853	+		Sama_1934	0.63	-2.9
2,361,854	-		Sama_1934	0.63	-1.4
2,361,854	-		Sama_1934	0.63	-0.7
2,361,854	-		Sama_1934	0.63	-1.8
2,361,918	+		Sama_1934	0.67	-1.7
2,361,919	-		Sama_1934	0.67	-1.4
2,362,020	+		Sama_1934	0.73	-0.7
2,362,024	-		Sama_1934	0.74	-1.1
2,362,146	-		Sama_1934	0.81	-0.1
2,362,172	-		Sama_1934	0.82	-0.8
2,362,338	+				-0.9
2,362,339	-				-0.5
2,362,339	-				-1.4
2,362,342	-				-1.8
2,362,362	-				-1.1
2,362,450	-				-0.8
2,362,450	-				-0.5
2,362,492	-				-0.3
2,362,530	-				+0.4
2,362,552	-				+0.4
2,362,554	+				-0.7
2,362,555	-				+1.2
2,362,559	-				-0.9
2,362,605	+				-1.0
2,362,615	+				+0.2
2,362,634	+				+0.5
2,362,669	+				-0.6
2,362,670	-				-0.8
2,362,699	+				+0.1
2,362,699	+				-0.6
2,362,699	+				-2.5
2,362,699	+				-0.1
2,362,699	+				+0.2
2,362,699	+				+0.2
2,362,700	-				+0.5
2,362,723	+				-1.1
2,362,746	+		Sama_1935	0.11	+0.7
2,362,746	+		Sama_1935	0.11	+0.5
2,362,784	-		Sama_1935	0.15	-1.5
2,362,808	+		Sama_1935	0.18	+0.2
2,362,838	-		Sama_1935	0.21	-0.8
2,362,838	-		Sama_1935	0.21	+0.5
2,362,906	+		Sama_1935	0.28	-2.1
2,362,978	+		Sama_1935	0.36	+0.8
2,363,013	-		Sama_1935	0.40	+0.5
2,363,029	+		Sama_1935	0.42	-0.4
2,363,029	+		Sama_1935	0.42	-0.3
2,363,030	-		Sama_1935	0.42	+0.1
2,363,030	-		Sama_1935	0.42	-2.7
2,363,030	-		Sama_1935	0.42	-0.0
2,363,031	+		Sama_1935	0.42	+0.3
2,363,031	+		Sama_1935	0.42	-0.2
2,363,031	+		Sama_1935	0.42	+0.5
2,363,031	+		Sama_1935	0.42	+0.5
2,363,032	-		Sama_1935	0.42	-0.4
2,363,032	-		Sama_1935	0.42	+0.2
2,363,032	-		Sama_1935	0.42	+0.1
2,363,032	-		Sama_1935	0.42	-0.1
2,363,069	+		Sama_1935	0.46	+0.1
2,363,092	+		Sama_1935	0.48	-0.5
2,363,151	-		Sama_1935	0.55	+0.4
2,363,168	-		Sama_1935	0.56	-1.4
2,363,189	+		Sama_1935	0.59	-1.9
2,363,189	+		Sama_1935	0.59	-0.1
2,363,193	+		Sama_1935	0.59	+0.5
2,363,193	+		Sama_1935	0.59	-0.3
2,363,194	-		Sama_1935	0.59	+1.4
2,363,207	+		Sama_1935	0.61	+0.0
2,363,208	-		Sama_1935	0.61	+0.2
2,363,208	-		Sama_1935	0.61	+0.4
2,363,208	-		Sama_1935	0.61	-1.6
2,363,209	+		Sama_1935	0.61	+0.2
2,363,210	-		Sama_1935	0.61	+1.4
2,363,231	-		Sama_1935	0.63	-1.7
2,363,271	-		Sama_1935	0.67	-1.8
2,363,295	+		Sama_1935	0.70	-1.1
2,363,296	-		Sama_1935	0.70	-2.2
2,363,300	+		Sama_1935	0.71	+0.5
2,363,316	+		Sama_1935	0.72	-0.2
2,363,317	-		Sama_1935	0.72	+0.6