Strain Fitness in Shewanella amazonensis SB2B around Sama_1909

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,337,411	-				-0.8
2,337,441	+				+0.6
2,337,441	+				+0.4
2,337,442	-				-0.5
2,337,442	-				+0.1
2,337,536	-				-1.0
2,337,536	-				-2.1
2,337,546	+				-1.4
2,337,546	+				+0.5
2,337,546	+				-1.1
2,337,546	+				-0.8
2,337,547	-				-1.8
2,337,547	-				-2.8
2,337,681	-		Sama_1909	0.25	-1.5
2,337,810	+		Sama_1909	0.49	-1.7
2,337,810	+		Sama_1909	0.49	-1.1
2,337,811	-		Sama_1909	0.50	-2.1
2,337,811	-		Sama_1909	0.50	-2.5
2,337,811	-		Sama_1909	0.50	-1.5
2,338,016	+		Sama_1909	0.88	+0.2
2,338,017	-		Sama_1909	0.89	-2.9
2,338,017	-		Sama_1909	0.89	+0.2
2,338,058	+				+0.4
2,338,059	-				-0.1
2,338,059	-				-0.4
2,338,101	+				-0.0
2,338,114	-				-0.2
2,338,367	-	bcp	Sama_1910	0.57	-1.1
2,338,367	-	bcp	Sama_1910	0.57	-0.2
2,338,444	+	bcp	Sama_1910	0.73	+0.1
2,338,449	+	bcp	Sama_1910	0.74	+0.2
2,338,449	+	bcp	Sama_1910	0.74	+0.4
2,338,449	+	bcp	Sama_1910	0.74	-0.1
2,338,451	+	bcp	Sama_1910	0.75	+0.5
2,338,451	+	bcp	Sama_1910	0.75	+0.2
2,338,452	-	bcp	Sama_1910	0.75	-1.6
2,338,638	-				-0.1
2,338,669	-				+1.2
2,338,669	-				-0.5
2,338,736	-				+0.3
2,338,736	-				+0.2
2,338,736	-				-1.4
2,339,022	+		Sama_1911	0.32	-1.8
2,339,023	-		Sama_1911	0.32	-0.3
2,339,030	-		Sama_1911	0.32	+0.5
2,339,030	-		Sama_1911	0.32	-0.2