Strain Fitness in Shewanella amazonensis SB2B around Sama_1887

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,301,628	-				+0.3
2,301,649	-				+2.5
2,301,668	-				-0.9
2,301,668	-				-0.4
2,301,668	-				+1.1
2,301,686	+				-1.1
2,301,686	+				+1.1
2,301,714	+				+1.3
2,301,715	-				-0.2
2,301,769	+				-0.3
2,301,807	+				+0.0
2,301,807	+				-0.1
2,301,807	+				+0.2
2,301,830	+				+0.0
2,301,830	+				-1.1
2,301,830	+				-0.5
2,301,831	-				+0.7
2,301,836	+				+0.9
2,301,836	+				+0.2
2,301,836	+				+0.1
2,301,874	-				+0.5
2,301,898	+				+0.5
2,301,899	-				+0.5
2,301,922	-				-0.3
2,301,930	+				+0.2
2,302,017	-				-0.1
2,302,017	-				+0.5
2,302,017	-				+1.1
2,302,057	+				-0.3
2,302,176	+		Sama_1886	0.30	-0.5
2,302,228	-		Sama_1886	0.40	-0.5
2,302,228	-		Sama_1886	0.40	+0.2
2,302,228	-		Sama_1886	0.40	+0.4
2,302,228	-		Sama_1886	0.40	-0.3
2,302,256	-		Sama_1886	0.45	-0.7
2,302,273	-		Sama_1886	0.48	-0.5
2,302,279	-		Sama_1886	0.49	-0.3
2,302,390	+		Sama_1886	0.70	+0.2
2,302,390	+		Sama_1886	0.70	-0.8
2,302,407	+		Sama_1886	0.74	+0.6
2,302,407	+		Sama_1886	0.74	+0.7
2,302,407	+		Sama_1886	0.74	+0.5
2,302,408	-		Sama_1886	0.74	-1.4
2,302,457	-		Sama_1886	0.83	-0.8
2,302,457	-		Sama_1886	0.83	+0.4
2,302,465	-		Sama_1886	0.85	-1.2
2,302,551	-				-1.4
2,302,586	+				-1.4
2,302,587	-				-0.5
2,302,587	-				-0.7
2,302,695	+				-1.2
2,302,696	-				-0.1
2,302,760	+		Sama_1887	0.12	-0.4
2,302,761	-		Sama_1887	0.12	-1.6
2,302,816	-		Sama_1887	0.15	+0.6
2,302,881	-		Sama_1887	0.19	-0.4
2,302,881	-		Sama_1887	0.19	+0.8
2,302,988	-		Sama_1887	0.25	-0.8
2,302,988	-		Sama_1887	0.25	-0.6
2,303,015	+		Sama_1887	0.26	+0.1
2,303,015	+		Sama_1887	0.26	-1.1
2,303,094	-		Sama_1887	0.30	-0.7
2,303,139	+		Sama_1887	0.33	-1.4
2,303,145	+		Sama_1887	0.33	+0.7
2,303,145	+		Sama_1887	0.33	-2.0
2,303,146	-		Sama_1887	0.33	-0.7
2,303,163	-		Sama_1887	0.34	-2.1
2,303,166	-		Sama_1887	0.34	-1.2
2,303,172	-		Sama_1887	0.35	-1.0
2,303,172	-		Sama_1887	0.35	-2.4
2,303,172	-		Sama_1887	0.35	-0.3
2,303,172	-		Sama_1887	0.35	-0.6
2,303,174	-		Sama_1887	0.35	-1.7
2,303,304	-		Sama_1887	0.42	-1.4
2,303,510	-		Sama_1887	0.53	+0.2
2,303,554	-		Sama_1887	0.56	+0.3
2,303,696	+		Sama_1887	0.64	-2.8
2,303,748	-		Sama_1887	0.66	-0.3
2,303,748	-		Sama_1887	0.66	-2.8
2,303,818	-		Sama_1887	0.70	-1.4
2,303,865	+		Sama_1887	0.73	+0.2
2,303,892	+		Sama_1887	0.74	-0.8
2,303,934	+		Sama_1887	0.77	-1.1
2,304,116	+		Sama_1887	0.87	-0.5
2,304,116	+		Sama_1887	0.87	-0.5
2,304,128	+		Sama_1887	0.87	-0.6
2,304,129	-		Sama_1887	0.87	-1.4
2,304,241	-				-0.8
2,304,241	-				-1.0
2,304,263	+				-1.6
2,304,290	+				-3.0
2,304,291	-				-1.4
2,304,291	-				-0.5
2,304,291	-				-0.5
2,304,295	+				-1.2
2,304,295	+				-0.8
2,304,295	+				+0.5
2,304,295	+				+0.9
2,304,296	-				-2.1
2,304,296	-				-2.8
2,304,371	-				+0.0
2,304,412	-				+0.2
2,304,430	+		Sama_1888	0.12	-0.6
2,304,430	+		Sama_1888	0.12	-0.2
2,304,430	+		Sama_1888	0.12	-0.5
2,304,430	+		Sama_1888	0.12	-0.8
2,304,431	-		Sama_1888	0.13	-0.2
2,304,431	-		Sama_1888	0.13	-0.3
2,304,431	-		Sama_1888	0.13	-0.1
2,304,431	-		Sama_1888	0.13	-1.0
2,304,432	+		Sama_1888	0.13	-0.1
2,304,471	-		Sama_1888	0.21	-0.7
2,304,476	+		Sama_1888	0.22	+2.2
2,304,544	-		Sama_1888	0.35	-0.1
2,304,544	-		Sama_1888	0.35	+1.1
2,304,545	+		Sama_1888	0.36	+0.6
2,304,546	-		Sama_1888	0.36	-0.1
2,304,546	-		Sama_1888	0.36	+0.4
2,304,546	-		Sama_1888	0.36	-0.2
2,304,546	-		Sama_1888	0.36	-2.1
2,304,546	-		Sama_1888	0.36	-0.1
2,304,546	-		Sama_1888	0.36	+1.5
2,304,549	+		Sama_1888	0.36	+0.7
2,304,549	+		Sama_1888	0.36	+0.7
2,304,550	-		Sama_1888	0.37	-0.3
2,304,550	-		Sama_1888	0.37	+0.4
2,304,550	-		Sama_1888	0.37	+1.0
2,304,550	-		Sama_1888	0.37	-0.4
2,304,563	+		Sama_1888	0.39	+1.1
2,304,567	+		Sama_1888	0.40	+0.8
2,304,567	+		Sama_1888	0.40	-1.8
2,304,567	+		Sama_1888	0.40	+0.3
2,304,567	+		Sama_1888	0.40	+0.1
2,304,568	-		Sama_1888	0.40	-0.8
2,304,568	-		Sama_1888	0.40	-0.5
2,304,568	-		Sama_1888	0.40	+0.6
2,304,568	-		Sama_1888	0.40	+0.5
2,304,568	-		Sama_1888	0.40	+1.2
2,304,568	-		Sama_1888	0.40	-0.7
2,304,568	-		Sama_1888	0.40	-0.4
2,304,568	-		Sama_1888	0.40	-0.2
2,304,568	-		Sama_1888	0.40	-0.1
2,304,568	-		Sama_1888	0.40	+0.9
2,304,586	+		Sama_1888	0.44	+0.6
2,304,654	-		Sama_1888	0.58	+0.6
2,304,654	-		Sama_1888	0.58	-0.4
2,304,654	-		Sama_1888	0.58	-0.3
2,304,732	-		Sama_1888	0.73	+0.9
2,304,748	-		Sama_1888	0.77	+0.4
2,304,849	+				-1.2
2,304,870	-				-3.6
2,304,905	-				+0.7
2,304,905	-				-0.6
2,304,966	-				+0.2
2,304,972	+				-0.1
2,304,974	+				-1.2
2,304,974	+				-1.0
2,304,990	+				-0.8
2,304,991	-				-0.7
2,305,015	+				-4.2
2,305,016	-				-1.8
2,305,016	-				-1.3
2,305,020	-				-1.0
2,305,133	+		Sama_1889	0.30	-0.6
2,305,266	+		Sama_1889	0.71	-1.4
2,305,311	+		Sama_1889	0.85	-3.6
2,305,330	+				-0.9