Strain Fitness in Shewanella amazonensis SB2B around Sama_1882

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,296,750	-				-0.2
2,296,750	-				+0.5
2,296,754	-				-1.0
2,296,767	-				-1.1
2,296,785	-				+3.4
2,296,786	+				-1.0
2,296,787	-				+0.8
2,296,806	+				-1.0
2,296,807	-				+2.0
2,296,811	+				+0.9
2,296,845	-				-0.3
2,296,849	-				+0.4
2,296,909	-	rnhA	Sama_1881	0.19	+0.5
2,296,909	-	rnhA	Sama_1881	0.19	+0.8
2,296,909	-	rnhA	Sama_1881	0.19	-1.0
2,296,909	-	rnhA	Sama_1881	0.19	-2.1
2,296,910	+	rnhA	Sama_1881	0.19	-0.1
2,296,964	+	rnhA	Sama_1881	0.30	+1.5
2,296,985	-	rnhA	Sama_1881	0.35	-0.2
2,297,003	+	rnhA	Sama_1881	0.39	+0.2
2,297,043	+	rnhA	Sama_1881	0.47	-0.4
2,297,043	+	rnhA	Sama_1881	0.47	-1.0
2,297,044	-	rnhA	Sama_1881	0.47	-0.3
2,297,044	-	rnhA	Sama_1881	0.47	-1.1
2,297,045	+	rnhA	Sama_1881	0.48	-0.5
2,297,045	+	rnhA	Sama_1881	0.48	+0.4
2,297,045	+	rnhA	Sama_1881	0.48	-0.5
2,297,046	-	rnhA	Sama_1881	0.48	-0.5
2,297,280	+				-0.5
2,297,335	-				-1.1
2,297,641	+		Sama_1882	0.34	-1.0
2,297,671	-		Sama_1882	0.37	-1.3
2,297,671	-		Sama_1882	0.37	-0.2
2,297,851	+		Sama_1882	0.57	-0.5
2,297,851	+		Sama_1882	0.57	+0.7
2,297,851	+		Sama_1882	0.57	-0.8
2,297,935	+		Sama_1882	0.66	+0.4
2,297,935	+		Sama_1882	0.66	-0.5
2,297,936	-		Sama_1882	0.66	-0.4
2,297,936	-		Sama_1882	0.66	-0.6
2,297,941	+		Sama_1882	0.67	+1.2
2,297,942	-		Sama_1882	0.67	+0.2
2,297,956	+		Sama_1882	0.69	-0.5
2,297,956	+		Sama_1882	0.69	+0.4
2,297,957	-		Sama_1882	0.69	-0.9
2,297,957	-		Sama_1882	0.69	-0.5
2,297,990	-		Sama_1882	0.72	-0.8
2,297,990	-		Sama_1882	0.72	-0.8
2,298,179	-				-0.2
2,298,344	-		Sama_1883	0.15	+1.6
2,298,371	+		Sama_1883	0.18	+1.1
2,298,371	+		Sama_1883	0.18	-0.3
2,298,371	+		Sama_1883	0.18	+0.1
2,298,371	+		Sama_1883	0.18	+0.4
2,298,442	+		Sama_1883	0.28	+0.5
2,298,442	+		Sama_1883	0.28	+1.3
2,298,443	-		Sama_1883	0.28	-0.8
2,298,446	-		Sama_1883	0.29	+1.1
2,298,455	+		Sama_1883	0.30	+1.3
2,298,456	-		Sama_1883	0.30	+1.0
2,298,456	-		Sama_1883	0.30	+2.8
2,298,499	-		Sama_1883	0.36	+2.1
2,298,516	+		Sama_1883	0.38	-0.3
2,298,517	-		Sama_1883	0.39	+0.3
2,298,517	-		Sama_1883	0.39	+0.3
2,298,523	+		Sama_1883	0.39	+0.5
2,298,524	-		Sama_1883	0.40	+1.2
2,298,560	-		Sama_1883	0.45	-0.3
2,298,604	-		Sama_1883	0.51	+0.9
2,298,615	+		Sama_1883	0.52	+2.3
2,298,616	-		Sama_1883	0.52	+0.5
2,298,624	-		Sama_1883	0.53	+0.2
2,298,715	+		Sama_1883	0.66	+1.0
2,298,715	+		Sama_1883	0.66	+0.9
2,298,715	+		Sama_1883	0.66	+1.4
2,298,715	+		Sama_1883	0.66	+0.4
2,298,716	-		Sama_1883	0.66	+0.8
2,298,716	-		Sama_1883	0.66	+0.4
2,298,716	-		Sama_1883	0.66	+0.9
2,298,716	-		Sama_1883	0.66	+1.8
2,298,716	-		Sama_1883	0.66	+0.9
2,298,716	-		Sama_1883	0.66	+1.3
2,298,716	-		Sama_1883	0.66	+1.4
2,298,716	-		Sama_1883	0.66	+1.2
2,298,716	-		Sama_1883	0.66	-1.1
2,298,718	-		Sama_1883	0.66	+1.9
2,298,737	-		Sama_1883	0.69	-0.4
2,298,737	-		Sama_1883	0.69	+0.9
2,298,737	-		Sama_1883	0.69	+0.5
2,298,737	-		Sama_1883	0.69	+0.9
2,298,801	+		Sama_1883	0.78	+1.5
2,298,802	-		Sama_1883	0.78	+1.5
2,298,802	-		Sama_1883	0.78	+1.9
2,298,810	+		Sama_1883	0.79	-0.2
2,298,810	+		Sama_1883	0.79	+0.6
2,298,810	+		Sama_1883	0.79	+0.7
2,298,810	+		Sama_1883	0.79	+1.4
2,298,810	+		Sama_1883	0.79	+2.7
2,298,810	+		Sama_1883	0.79	+1.0
2,298,810	+		Sama_1883	0.79	+1.2
2,298,810	+		Sama_1883	0.79	+2.9
2,298,811	-		Sama_1883	0.79	+0.2
2,298,811	-		Sama_1883	0.79	+0.2
2,298,811	-		Sama_1883	0.79	+1.4
2,298,811	-		Sama_1883	0.79	-0.9
2,298,811	-		Sama_1883	0.79	+1.4
2,298,847	-		Sama_1883	0.84	+1.2
2,298,885	+		Sama_1883	0.89	+0.5
2,298,886	-		Sama_1883	0.90	+0.9
2,298,891	+				+1.6
2,298,892	-				-0.7
2,298,992	+				+1.5
2,298,997	+				+1.3
2,298,997	+				+1.8
2,298,998	-				+0.2
2,298,998	-				+0.6
2,298,998	-				+1.1
2,298,998	-				+0.3
2,299,003	-				+0.6
2,299,003	-				+1.1
2,299,012	-				+0.3
2,299,016	-				-1.2
2,299,016	-				+1.1
2,299,036	-				+0.5
2,299,038	+				-0.9
2,299,039	-				-0.8
2,299,183	-				-0.3