Strain Fitness in Shewanella amazonensis SB2B around Sama_1863

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,267,730	+				+0.5
2,267,730	+				-0.6
2,267,800	-				-1.6
2,267,861	-		Sama_1862	0.12	-0.2
2,267,870	+		Sama_1862	0.13	-0.6
2,267,870	+		Sama_1862	0.13	-0.3
2,267,902	-		Sama_1862	0.18	-2.8
2,267,947	+		Sama_1862	0.24	-0.1
2,267,947	+		Sama_1862	0.24	+0.4
2,267,947	+		Sama_1862	0.24	+0.2
2,268,016	+		Sama_1862	0.33	+0.4
2,268,016	+		Sama_1862	0.33	-0.4
2,268,041	-		Sama_1862	0.37	+1.3
2,268,047	+		Sama_1862	0.38	-0.5
2,268,048	-		Sama_1862	0.38	+0.8
2,268,067	+		Sama_1862	0.40	-0.8
2,268,110	+		Sama_1862	0.46	-0.8
2,268,131	+		Sama_1862	0.49	-0.2
2,268,144	+		Sama_1862	0.51	-2.4
2,268,145	-		Sama_1862	0.51	-0.0
2,268,270	-		Sama_1862	0.68	+1.0
2,268,340	+		Sama_1862	0.78	+0.2
2,268,369	-		Sama_1862	0.82	-0.2
2,268,412	+		Sama_1862	0.88	-0.2
2,268,473	+				-0.3
2,268,473	+				-2.3
2,268,473	+				+2.8
2,268,473	+				-1.1
2,268,497	+				-0.2
2,268,504	+				+0.2
2,268,528	+				-0.8
2,268,584	+				-0.1
2,268,584	+				-0.4
2,268,584	+				+0.9
2,268,585	-				+0.3
2,268,585	-				-1.4
2,268,585	-				-0.6
2,268,585	-				-0.0
2,268,628	+				-0.1
2,268,628	+				+0.2
2,268,629	-				+0.9
2,268,629	-				-0.6
2,268,629	-				+1.2
2,268,637	+				-0.2
2,268,638	-				+0.1
2,268,638	-				+0.8
2,268,638	-				+0.2
2,268,705	-				+0.1
2,268,766	-				+0.1
2,268,864	-				-0.8
2,268,866	+				-0.6
2,268,867	-				+0.3
2,268,873	+				+0.8
2,268,873	+				-1.2
2,268,910	-				-2.0
2,269,029	+		Sama_1863	0.12	+0.2
2,269,030	-		Sama_1863	0.12	+0.2
2,269,313	+		Sama_1863	0.21	-0.7
2,269,314	-		Sama_1863	0.21	+0.2
2,269,412	+		Sama_1863	0.25	+0.1
2,269,413	-		Sama_1863	0.25	+0.2
2,269,474	+		Sama_1863	0.27	-0.5
2,269,475	-		Sama_1863	0.27	+0.8
2,269,529	-		Sama_1863	0.28	-0.1
2,269,529	-		Sama_1863	0.28	+0.6
2,269,530	+		Sama_1863	0.28	+2.3
2,269,530	+		Sama_1863	0.28	-0.6
2,269,531	-		Sama_1863	0.28	+0.6
2,269,531	-		Sama_1863	0.28	+0.4
2,269,531	-		Sama_1863	0.28	+0.2
2,269,535	+		Sama_1863	0.28	-0.1
2,269,535	+		Sama_1863	0.28	-0.4
2,269,535	+		Sama_1863	0.28	+0.5
2,269,535	+		Sama_1863	0.28	-0.8
2,269,535	+		Sama_1863	0.28	-0.1
2,269,536	-		Sama_1863	0.29	+0.6
2,269,536	-		Sama_1863	0.29	-0.1
2,269,540	+		Sama_1863	0.29	-1.0
2,269,540	+		Sama_1863	0.29	+1.2
2,269,541	-		Sama_1863	0.29	-0.2
2,269,552	+		Sama_1863	0.29	+0.2
2,269,552	+		Sama_1863	0.29	+0.6
2,269,553	-		Sama_1863	0.29	-0.6
2,269,553	-		Sama_1863	0.29	+0.2
2,269,553	-		Sama_1863	0.29	-1.2
2,269,553	-		Sama_1863	0.29	-0.5
2,269,554	-		Sama_1863	0.29	-0.1
2,269,557	+		Sama_1863	0.29	+0.3
2,269,842	-		Sama_1863	0.38	+0.2
2,269,859	-		Sama_1863	0.39	-1.1
2,269,960	+		Sama_1863	0.42	+0.2
2,269,960	+		Sama_1863	0.42	-0.6
2,269,964	-		Sama_1863	0.42	+0.1
2,269,964	-		Sama_1863	0.42	-0.8
2,270,132	+		Sama_1863	0.48	+0.3
2,270,132	+		Sama_1863	0.48	-0.2
2,270,132	+		Sama_1863	0.48	-0.8
2,270,132	+		Sama_1863	0.48	+0.5
2,270,178	+		Sama_1863	0.49	-0.2
2,270,204	+		Sama_1863	0.50	+1.2
2,270,205	-		Sama_1863	0.50	-0.1
2,270,295	+		Sama_1863	0.53	-0.6
2,270,295	+		Sama_1863	0.53	-0.3
2,270,296	-		Sama_1863	0.53	+0.4
2,270,308	-		Sama_1863	0.53	-0.3
2,270,344	+		Sama_1863	0.55	-0.7
2,270,403	-		Sama_1863	0.57	-1.6
2,270,501	-		Sama_1863	0.60	-0.2
2,270,543	-		Sama_1863	0.61	+0.2
2,270,547	-		Sama_1863	0.61	-1.9
2,270,547	-		Sama_1863	0.61	+0.2
2,270,547	-		Sama_1863	0.61	+0.2
2,270,547	-		Sama_1863	0.61	+1.2
2,270,633	+		Sama_1863	0.64	+1.0
2,270,651	+		Sama_1863	0.65	-0.1
2,270,651	+		Sama_1863	0.65	+0.1
2,270,652	-		Sama_1863	0.65	+0.4
2,270,669	-		Sama_1863	0.65	-0.4
2,270,763	+		Sama_1863	0.68	+0.3
2,270,770	+		Sama_1863	0.68	-0.8
2,270,770	+		Sama_1863	0.68	+0.8
2,270,795	-		Sama_1863	0.69	-0.4
2,270,811	-		Sama_1863	0.70	+0.5
2,270,811	-		Sama_1863	0.70	+0.5
2,270,816	+		Sama_1863	0.70	+0.4
2,270,816	+		Sama_1863	0.70	-0.8
2,270,816	+		Sama_1863	0.70	-1.0
2,270,817	-		Sama_1863	0.70	+0.4
2,270,817	-		Sama_1863	0.70	+2.2
2,270,817	-		Sama_1863	0.70	+1.5
2,270,831	-		Sama_1863	0.70	-0.1
2,270,905	+		Sama_1863	0.73	-0.1
2,270,905	+		Sama_1863	0.73	-0.3
2,270,906	-		Sama_1863	0.73	-0.1
2,270,906	-		Sama_1863	0.73	-0.1
2,270,919	-		Sama_1863	0.73	-2.1
2,270,953	+		Sama_1863	0.74	-1.0
2,270,953	+		Sama_1863	0.74	+1.7
2,270,953	+		Sama_1863	0.74	+0.7
2,270,954	-		Sama_1863	0.74	-0.3
2,271,058	+		Sama_1863	0.78	+0.0
2,271,129	+		Sama_1863	0.80	+0.4
2,271,130	-		Sama_1863	0.80	+0.2
2,271,130	-		Sama_1863	0.80	+2.5
2,271,164	+		Sama_1863	0.81	+1.6
2,271,164	+		Sama_1863	0.81	+0.5
2,271,165	-		Sama_1863	0.81	+0.1
2,271,165	-		Sama_1863	0.81	-0.8
2,271,165	-		Sama_1863	0.81	-2.8
2,271,223	+		Sama_1863	0.83	+0.2
2,271,223	+		Sama_1863	0.83	+0.7
2,271,274	+		Sama_1863	0.85	-0.0
2,271,296	+		Sama_1863	0.85	+1.3
2,271,296	+		Sama_1863	0.85	-1.5
2,271,297	-		Sama_1863	0.85	-0.4
2,271,477	+				+0.2
2,271,477	+				+0.8
2,271,478	-				-1.0
2,271,478	-				-0.6
2,271,652	+				-0.7
2,271,653	-				-0.3
2,271,715	+				+1.2
2,271,715	+				+0.0
2,271,732	+				-0.1
2,271,733	-				-0.3
2,271,742	+				-0.3
2,271,743	-				+0.0
2,271,765	+				+0.0
2,271,831	+				+0.0
2,271,832	-				+0.4
2,271,832	-				-0.4
2,271,832	-				+0.2
2,271,882	-				+1.2
2,271,882	-				-0.7
2,272,081	+		Sama_1864	0.15	+0.2
2,272,082	-		Sama_1864	0.15	-0.6
2,272,148	-		Sama_1864	0.18	-3.0
2,272,185	-		Sama_1864	0.19	-0.3
2,272,185	-		Sama_1864	0.19	-0.0
2,272,185	-		Sama_1864	0.19	-0.1
2,272,199	+		Sama_1864	0.20	-1.8
2,272,199	+		Sama_1864	0.20	-0.3
2,272,200	-		Sama_1864	0.20	+0.6
2,272,200	-		Sama_1864	0.20	+0.2
2,272,282	+		Sama_1864	0.23	-0.6
2,272,307	-		Sama_1864	0.24	-0.0
2,272,418	+		Sama_1864	0.29	-0.5
2,272,435	+		Sama_1864	0.30	-0.7
2,272,482	+		Sama_1864	0.32	-0.1
2,272,482	+		Sama_1864	0.32	+0.5
2,272,483	-		Sama_1864	0.32	-1.0
2,272,483	-		Sama_1864	0.32	-0.4
2,272,483	-		Sama_1864	0.32	+0.9
2,272,494	-		Sama_1864	0.33	-1.6
2,272,516	+		Sama_1864	0.34	+0.9
2,272,517	-		Sama_1864	0.34	-0.1
2,272,518	+		Sama_1864	0.34	+0.7
2,272,518	+		Sama_1864	0.34	+0.2
2,272,518	+		Sama_1864	0.34	+0.9
2,272,518	+		Sama_1864	0.34	+0.0
2,272,519	-		Sama_1864	0.34	+1.2
2,272,522	+		Sama_1864	0.34	-1.0
2,272,522	+		Sama_1864	0.34	+0.4
2,272,601	+		Sama_1864	0.37	+0.2
2,272,657	+		Sama_1864	0.40	-0.1
2,272,664	-		Sama_1864	0.40	+1.1
2,272,664	-		Sama_1864	0.40	-0.4
2,272,724	+		Sama_1864	0.43	-0.8