Strain Fitness in Shewanella amazonensis SB2B around Sama_1862

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,266,849	+		Sama_1861	0.67	+0.8
2,266,894	+		Sama_1861	0.71	-0.7
2,266,932	+		Sama_1861	0.74	-0.5
2,266,933	-		Sama_1861	0.74	+0.2
2,267,008	+		Sama_1861	0.81	-0.4
2,267,008	+		Sama_1861	0.81	-1.6
2,267,009	-		Sama_1861	0.81	-0.2
2,267,009	-		Sama_1861	0.81	-0.6
2,267,043	+		Sama_1861	0.85	-0.8
2,267,043	+		Sama_1861	0.85	+0.2
2,267,043	+		Sama_1861	0.85	+0.2
2,267,043	+		Sama_1861	0.85	-1.1
2,267,043	+		Sama_1861	0.85	-0.6
2,267,044	-		Sama_1861	0.85	+0.1
2,267,044	-		Sama_1861	0.85	-0.1
2,267,044	-		Sama_1861	0.85	-0.1
2,267,044	-		Sama_1861	0.85	-0.2
2,267,044	-		Sama_1861	0.85	+2.1
2,267,044	-		Sama_1861	0.85	+0.0
2,267,044	-		Sama_1861	0.85	+0.4
2,267,044	-		Sama_1861	0.85	-0.0
2,267,045	+		Sama_1861	0.85	+0.5
2,267,109	+				+0.2
2,267,109	+				-0.2
2,267,116	-				+0.1
2,267,146	-				-1.7
2,267,151	+				-0.2
2,267,170	+				-0.6
2,267,275	+				+0.7
2,267,276	-				+1.2
2,267,318	+				-0.6
2,267,319	-				-1.8
2,267,323	-				-0.1
2,267,384	+				-0.2
2,267,385	-				+1.4
2,267,385	-				+0.3
2,267,385	-				-1.4
2,267,395	+				-0.3
2,267,395	+				-0.6
2,267,396	-				+1.8
2,267,396	-				+1.5
2,267,407	+				-1.0
2,267,408	-				+0.9
2,267,483	+				-1.4
2,267,730	+				+0.5
2,267,730	+				-0.6
2,267,800	-				-1.6
2,267,861	-		Sama_1862	0.12	-0.2
2,267,870	+		Sama_1862	0.13	-0.6
2,267,870	+		Sama_1862	0.13	-0.3
2,267,902	-		Sama_1862	0.18	-2.8
2,267,947	+		Sama_1862	0.24	-0.1
2,267,947	+		Sama_1862	0.24	+0.4
2,267,947	+		Sama_1862	0.24	+0.2
2,268,016	+		Sama_1862	0.33	+0.4
2,268,016	+		Sama_1862	0.33	-0.4
2,268,041	-		Sama_1862	0.37	+1.3
2,268,047	+		Sama_1862	0.38	-0.5
2,268,048	-		Sama_1862	0.38	+0.8
2,268,067	+		Sama_1862	0.40	-0.8
2,268,110	+		Sama_1862	0.46	-0.8
2,268,131	+		Sama_1862	0.49	-0.2
2,268,144	+		Sama_1862	0.51	-2.4
2,268,145	-		Sama_1862	0.51	-0.0
2,268,270	-		Sama_1862	0.68	+1.0
2,268,340	+		Sama_1862	0.78	+0.2
2,268,369	-		Sama_1862	0.82	-0.2
2,268,412	+		Sama_1862	0.88	-0.2
2,268,473	+				-0.3
2,268,473	+				-2.3
2,268,473	+				+2.8
2,268,473	+				-1.1
2,268,497	+				-0.2
2,268,504	+				+0.2
2,268,528	+				-0.8
2,268,584	+				-0.1
2,268,584	+				-0.4
2,268,584	+				+0.9
2,268,585	-				+0.3
2,268,585	-				-1.4
2,268,585	-				-0.6
2,268,585	-				-0.0
2,268,628	+				-0.1
2,268,628	+				+0.2
2,268,629	-				+0.9
2,268,629	-				-0.6
2,268,629	-				+1.2
2,268,637	+				-0.2
2,268,638	-				+0.1
2,268,638	-				+0.8
2,268,638	-				+0.2
2,268,705	-				+0.1
2,268,766	-				+0.1
2,268,864	-				-0.8
2,268,866	+				-0.6
2,268,867	-				+0.3
2,268,873	+				+0.8
2,268,873	+				-1.2
2,268,910	-				-2.0
2,269,029	+		Sama_1863	0.12	+0.2
2,269,030	-		Sama_1863	0.12	+0.2
2,269,313	+		Sama_1863	0.21	-0.7
2,269,314	-		Sama_1863	0.21	+0.2
2,269,412	+		Sama_1863	0.25	+0.1
2,269,413	-		Sama_1863	0.25	+0.2
2,269,474	+		Sama_1863	0.27	-0.5
2,269,475	-		Sama_1863	0.27	+0.8