Strain Fitness in Shewanella amazonensis SB2B around Sama_1818

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,214,301	+		Sama_1817	0.60	+0.1
2,214,372	-		Sama_1817	0.64	-0.4
2,214,383	+		Sama_1817	0.64	+0.0
2,214,476	+		Sama_1817	0.69	+0.2
2,214,476	+		Sama_1817	0.69	+0.1
2,214,540	+		Sama_1817	0.73	-0.1
2,214,609	+		Sama_1817	0.76	-0.3
2,214,610	-		Sama_1817	0.76	-0.4
2,214,610	-		Sama_1817	0.76	-0.8
2,214,755	+		Sama_1817	0.84	+0.2
2,214,852	+		Sama_1817	0.89	-0.2
2,214,972	+				+1.4
2,214,973	-				-0.4
2,215,046	+				-0.2
2,215,054	+				+0.4
2,215,054	+				-0.2
2,215,054	+				+0.2
2,215,054	+				+1.5
2,215,055	-				-0.2
2,215,055	-				+0.6
2,215,074	+				+1.4
2,215,101	+				+0.5
2,215,144	+				+0.2
2,215,253	+				+0.2
2,215,275	-				+0.2
2,215,330	+		Sama_1818	0.11	-0.1
2,215,331	-		Sama_1818	0.11	+0.1
2,215,331	-		Sama_1818	0.11	+0.6
2,215,331	-		Sama_1818	0.11	-0.1
2,215,372	+		Sama_1818	0.18	+0.5
2,215,465	-		Sama_1818	0.32	+0.6
2,215,579	+		Sama_1818	0.49	+3.2
2,215,656	+		Sama_1818	0.61	+1.3
2,215,755	-		Sama_1818	0.76	-0.1
2,215,755	-		Sama_1818	0.76	-0.3
2,215,787	+		Sama_1818	0.81	+0.4
2,215,788	-		Sama_1818	0.81	+1.2
2,215,788	-		Sama_1818	0.81	-2.6
2,215,788	-		Sama_1818	0.81	+1.3
2,215,788	-		Sama_1818	0.81	+0.1
2,215,788	-		Sama_1818	0.81	-0.1
2,215,788	-		Sama_1818	0.81	+0.5
2,215,821	+		Sama_1818	0.86	+1.8
2,215,850	+				+0.3
2,215,869	+				-0.1
2,215,882	-				-1.3
2,215,887	+				+1.6
2,215,887	+				-1.4
2,215,888	-				-0.1
2,215,888	-				-0.8
2,215,919	-				+0.2
2,215,919	-				-1.6
2,215,920	+				+1.4
2,215,920	+				-2.1
2,215,920	+				-1.2
2,215,920	+				+0.2
2,215,921	-				-1.0
2,215,921	-				+2.5
2,215,941	-				-0.2
2,216,055	+		Sama_1819	0.18	+0.6
2,216,056	-		Sama_1819	0.18	+1.8
2,216,102	-		Sama_1819	0.26	+0.2
2,216,130	+		Sama_1819	0.31	-0.8
2,216,130	+		Sama_1819	0.31	-1.5
2,216,130	+		Sama_1819	0.31	+0.8
2,216,131	-		Sama_1819	0.31	-0.8
2,216,131	-		Sama_1819	0.31	+0.6
2,216,131	-		Sama_1819	0.31	-0.8
2,216,134	+		Sama_1819	0.32	-0.1
2,216,190	+		Sama_1819	0.41	-0.4
2,216,254	+		Sama_1819	0.53	-0.2
2,216,254	+		Sama_1819	0.53	-0.2
2,216,254	+		Sama_1819	0.53	-0.1
2,216,296	-		Sama_1819	0.60	-0.1
2,216,298	+		Sama_1819	0.61	-0.1
2,216,298	+		Sama_1819	0.61	+0.2
2,216,299	-		Sama_1819	0.61	+0.7
2,216,442	+		Sama_1819	0.86	+1.0
2,216,518	-				+0.2
2,216,540	+				+1.6
2,216,540	+				+0.2
2,216,541	-				-0.2
2,216,543	+				-2.0
2,216,543	+				+2.5
2,216,543	+				+1.1
2,216,544	-				-0.8
2,216,549	+				-1.0
2,216,550	-				-0.1
2,216,675	+		Sama_1820	0.27	+0.0
2,216,689	-		Sama_1820	0.30	+0.3
2,216,782	+		Sama_1820	0.50	-1.8
2,216,792	+		Sama_1820	0.52	-0.1
2,216,793	-		Sama_1820	0.53	+0.2
2,216,835	+		Sama_1820	0.62	-0.1
2,216,854	+		Sama_1820	0.66	-0.4
2,216,854	+		Sama_1820	0.66	+0.5
2,216,854	+		Sama_1820	0.66	-0.8
2,216,854	+		Sama_1820	0.66	-1.5
2,216,854	+		Sama_1820	0.66	-0.5
2,216,855	-		Sama_1820	0.66	+0.9
2,216,897	+		Sama_1820	0.75	+0.4
2,216,907	+		Sama_1820	0.77	-2.4
2,216,908	-		Sama_1820	0.77	+0.4