Strain Fitness in Shewanella amazonensis SB2B around Sama_1761

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,155,442	+		Sama_1760	0.85	+0.5
2,155,572	-		Sama_1760	0.89	+0.0
2,155,572	-		Sama_1760	0.89	+0.7
2,155,714	+				+1.0
2,155,835	+				+0.0
2,155,900	+				-0.7
2,155,901	-				-0.6
2,155,901	-				-0.6
2,155,956	-				+0.8
2,155,973	+				+1.8
2,155,984	-				-0.4
2,156,107	-		Sama_R0066	0.45	-1.6
2,156,120	-		Sama_R0066	0.62	-0.8
2,156,128	-		Sama_R0066	0.73	-0.4
2,156,149	-				+0.2
2,156,149	-				-0.4
2,156,149	-				+0.9
2,156,149	-				+0.4
2,156,149	-				-0.3
2,156,149	-				-0.2
2,156,149	-				+0.6
2,156,149	-				+2.0
2,156,192	-				-0.9
2,156,223	-		Sama_R0067	0.45	-0.9
2,156,223	-		Sama_R0067	0.45	-1.0
2,156,257	-				-0.2
2,156,292	-				+0.2
2,156,294	-				-1.4
2,156,297	-				+0.6
2,156,297	-				+1.8
2,156,411	+				+1.2
2,156,565	-		Sama_1761	0.11	-1.0
2,156,578	-		Sama_1761	0.12	+1.6
2,156,610	-		Sama_1761	0.15	+0.0
2,156,631	+		Sama_1761	0.16	+1.9
2,156,632	-		Sama_1761	0.16	+1.7
2,156,634	-		Sama_1761	0.16	+0.3
2,156,665	+		Sama_1761	0.19	+0.9
2,156,666	-		Sama_1761	0.19	+1.6
2,156,684	+		Sama_1761	0.20	+0.9
2,156,685	-		Sama_1761	0.20	+1.9
2,156,745	-		Sama_1761	0.25	+1.8
2,156,745	-		Sama_1761	0.25	+0.6
2,156,770	+		Sama_1761	0.26	+1.9
2,156,770	+		Sama_1761	0.26	+1.7
2,156,782	-		Sama_1761	0.27	+1.4
2,156,790	+		Sama_1761	0.28	+0.6
2,156,791	-		Sama_1761	0.28	+2.0
2,156,801	-		Sama_1761	0.29	-0.1
2,156,834	-		Sama_1761	0.31	+0.7
2,156,871	-		Sama_1761	0.34	+0.3
2,156,871	-		Sama_1761	0.34	+1.4
2,156,873	+		Sama_1761	0.34	+1.4
2,156,873	+		Sama_1761	0.34	-0.6
2,156,874	-		Sama_1761	0.34	+0.3
2,156,904	+		Sama_1761	0.36	+0.5
2,156,904	+		Sama_1761	0.36	+1.0
2,156,905	-		Sama_1761	0.36	+0.2
2,156,919	+		Sama_1761	0.37	+1.4
2,156,948	-		Sama_1761	0.40	+2.8
2,156,989	+		Sama_1761	0.43	+0.5
2,156,990	-		Sama_1761	0.43	+0.0
2,157,079	+		Sama_1761	0.49	+0.5
2,157,080	-		Sama_1761	0.49	+1.7
2,157,103	-		Sama_1761	0.51	+1.3
2,157,141	+		Sama_1761	0.54	-1.0
2,157,142	-		Sama_1761	0.54	+1.4
2,157,160	+		Sama_1761	0.55	+1.8
2,157,248	+		Sama_1761	0.62	+2.9
2,157,248	+		Sama_1761	0.62	+0.5
2,157,249	-		Sama_1761	0.62	+2.2
2,157,249	-		Sama_1761	0.62	+0.0
2,157,306	+		Sama_1761	0.66	+1.6
2,157,307	-		Sama_1761	0.66	+1.1
2,157,327	+		Sama_1761	0.67	+1.6
2,157,327	+		Sama_1761	0.67	+1.4
2,157,327	+		Sama_1761	0.67	+1.1
2,157,328	-		Sama_1761	0.67	+3.0
2,157,328	-		Sama_1761	0.67	+0.6
2,157,344	+		Sama_1761	0.69	-0.2
2,157,344	+		Sama_1761	0.69	-0.3
2,157,345	-		Sama_1761	0.69	+0.5
2,157,386	+		Sama_1761	0.72	+1.0
2,157,492	+		Sama_1761	0.79	+2.4
2,157,493	-		Sama_1761	0.80	+1.5
2,157,493	-		Sama_1761	0.80	+1.9
2,157,494	+		Sama_1761	0.80	+2.5
2,157,494	+		Sama_1761	0.80	+1.1
2,157,495	-		Sama_1761	0.80	+0.9
2,157,495	-		Sama_1761	0.80	+1.0
2,157,522	+		Sama_1761	0.82	+2.4
2,157,568	-		Sama_1761	0.85	+0.0
2,157,613	+		Sama_1761	0.88	+0.8
2,157,613	+		Sama_1761	0.88	+1.6
2,157,613	+		Sama_1761	0.88	+1.1
2,157,613	+		Sama_1761	0.88	+1.6
2,157,613	+		Sama_1761	0.88	+0.8
2,157,613	+		Sama_1761	0.88	+2.2
2,157,614	-		Sama_1761	0.88	+1.8
2,157,614	-		Sama_1761	0.88	+1.4
2,157,614	-		Sama_1761	0.88	+1.6
2,157,681	+				+1.9
2,157,712	+				+2.3
2,157,712	+				+1.5
2,157,712	+				+2.5
2,157,712	+				+2.0
2,157,712	+				-0.6
2,157,712	+				+1.8
2,157,802	+				+1.2
2,157,809	-				+1.2
2,157,967	+		Sama_1762	0.28	+2.3
2,157,967	+		Sama_1762	0.28	+1.6
2,157,967	+		Sama_1762	0.28	-0.4
2,157,968	-		Sama_1762	0.28	+1.4
2,157,984	+		Sama_1762	0.31	+1.0
2,157,984	+		Sama_1762	0.31	+1.5
2,157,985	-		Sama_1762	0.31	-3.0
2,158,000	+		Sama_1762	0.33	+0.2
2,158,000	+		Sama_1762	0.33	-2.6
2,158,001	-		Sama_1762	0.33	+0.2
2,158,001	-		Sama_1762	0.33	+2.2
2,158,005	+		Sama_1762	0.34	-0.4
2,158,006	-		Sama_1762	0.34	-1.5
2,158,069	+		Sama_1762	0.45	+1.0
2,158,164	+		Sama_1762	0.60	+2.5
2,158,165	-		Sama_1762	0.60	-0.7
2,158,165	-		Sama_1762	0.60	+0.2
2,158,190	+		Sama_1762	0.65	+0.4
2,158,200	-		Sama_1762	0.66	-1.9
2,158,200	-		Sama_1762	0.66	+0.6
2,158,200	-		Sama_1762	0.66	-1.2
2,158,200	-		Sama_1762	0.66	-0.8
2,158,432	+		Sama_1763	0.16	+0.6
2,158,432	+		Sama_1763	0.16	+0.3
2,158,432	+		Sama_1763	0.16	+0.1
2,158,433	-		Sama_1763	0.17	+0.2
2,158,444	-		Sama_1763	0.22	+0.5
2,158,479	+		Sama_1763	0.40	-0.3
2,158,508	+		Sama_1763	0.54	-0.4
2,158,628	+				-0.0
2,158,666	+				+1.3
2,158,666	+				-0.1
2,158,684	+		Sama_1764	0.11	+1.0
2,158,684	+		Sama_1764	0.11	+1.1
2,158,684	+		Sama_1764	0.11	+0.9
2,158,685	-		Sama_1764	0.11	-0.1
2,158,685	-		Sama_1764	0.11	+1.1