Strain Fitness in Shewanella amazonensis SB2B around Sama_1723

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,106,715	+	ansA	Sama_1722	0.39	-2.6
2,106,716	-	ansA	Sama_1722	0.39	-0.4
2,106,924	+	ansA	Sama_1722	0.60	+1.8
2,106,924	+	ansA	Sama_1722	0.60	+0.0
2,106,924	+	ansA	Sama_1722	0.60	+1.8
2,106,924	+	ansA	Sama_1722	0.60	-0.8
2,106,924	+	ansA	Sama_1722	0.60	+0.6
2,107,025	-	ansA	Sama_1722	0.70	-0.4
2,107,048	-	ansA	Sama_1722	0.72	+1.8
2,107,099	-	ansA	Sama_1722	0.77	+1.2
2,107,174	-	ansA	Sama_1722	0.84	+2.2
2,107,368	+				-0.8
2,107,371	-				-0.4
2,107,428	+				-0.0
2,107,428	+				-0.8
2,107,433	+				-1.8
2,107,434	-				-0.4
2,107,473	-				+0.2
2,107,500	-				-0.3
2,107,515	-				-1.2
2,107,524	-				-2.2
2,107,529	+				-2.2
2,107,529	+				-1.3
2,107,529	+				+0.8
2,107,530	-				-0.8
2,107,530	-				-0.5
2,107,530	-				-0.6
2,107,530	-				-1.5
2,107,530	-				-1.8
2,107,530	-				-2.5
2,107,530	-				-1.2
2,107,532	-				-1.4
2,107,761	+		Sama_1723	0.14	-1.1
2,107,762	-		Sama_1723	0.14	+0.2
2,107,762	-		Sama_1723	0.14	-0.8
2,107,893	-		Sama_1723	0.21	-1.6
2,108,150	-		Sama_1723	0.35	-0.6
2,108,231	-		Sama_1723	0.40	-1.4
2,108,292	+		Sama_1723	0.43	-3.0
2,108,293	-		Sama_1723	0.43	-1.4
2,108,406	+		Sama_1723	0.49	+0.2
2,108,407	-		Sama_1723	0.49	-1.4
2,108,407	-		Sama_1723	0.49	+0.2
2,108,407	-		Sama_1723	0.49	-1.5
2,108,513	-		Sama_1723	0.55	-1.6
2,108,576	+		Sama_1723	0.58	-3.0
2,108,577	-		Sama_1723	0.58	-1.8
2,108,577	-		Sama_1723	0.58	-1.3
2,108,577	-		Sama_1723	0.58	-1.6
2,108,577	-		Sama_1723	0.58	-1.3
2,108,642	+		Sama_1723	0.62	-1.4
2,108,642	+		Sama_1723	0.62	-2.6
2,108,643	-		Sama_1723	0.62	-0.8
2,108,643	-		Sama_1723	0.62	-1.6
2,108,643	-		Sama_1723	0.62	-1.8
2,108,643	-		Sama_1723	0.62	-1.2
2,108,647	-		Sama_1723	0.62	-1.4
2,108,701	-		Sama_1723	0.65	-2.2
2,108,701	-		Sama_1723	0.65	+1.2
2,108,713	-		Sama_1723	0.66	-0.2
2,108,714	+		Sama_1723	0.66	-0.6
2,108,715	-		Sama_1723	0.66	-0.7
2,108,715	-		Sama_1723	0.66	-0.6
2,108,715	-		Sama_1723	0.66	-2.4
2,108,734	-		Sama_1723	0.67	-2.2
2,108,734	-		Sama_1723	0.67	-1.6
2,108,734	-		Sama_1723	0.67	-1.4
2,108,734	-		Sama_1723	0.67	-0.3
2,108,735	+		Sama_1723	0.67	-1.1
2,108,736	-		Sama_1723	0.67	+0.2
2,108,736	-		Sama_1723	0.67	-0.4
2,108,736	-		Sama_1723	0.67	-2.8
2,108,736	-		Sama_1723	0.67	-0.2
2,108,736	-		Sama_1723	0.67	-1.4
2,108,740	-		Sama_1723	0.67	-3.0
2,108,740	-		Sama_1723	0.67	-0.8
2,108,770	-		Sama_1723	0.69	-2.3
2,108,796	-		Sama_1723	0.70	-1.4
2,108,803	-		Sama_1723	0.70	-2.4
2,108,803	-		Sama_1723	0.70	+0.2
2,108,803	-		Sama_1723	0.70	-1.8
2,108,804	+		Sama_1723	0.70	-1.0
2,108,805	-		Sama_1723	0.70	-0.9
2,108,879	+		Sama_1723	0.74	+0.2
2,108,971	-		Sama_1723	0.79	-0.8
2,109,051	-		Sama_1723	0.84	-0.8
2,109,051	-		Sama_1723	0.84	-0.1
2,109,109	-		Sama_1723	0.87	-1.8
2,109,161	-		Sama_1723	0.90	-0.4
2,109,192	+				-1.1
2,109,215	-				-1.8
2,109,365	-				+0.3
2,109,380	+				-1.8
2,109,380	+				-0.2
2,109,380	+				-1.8
2,109,380	+				+0.5
2,109,380	+				-1.4
2,109,380	+				-2.2
2,109,381	-				-1.2
2,109,381	-				-1.0
2,109,420	+				+0.7
2,109,459	+				-0.2
2,109,459	+				+0.8
2,109,460	-				+1.2
2,109,461	+				+0.0
2,109,475	+				+1.3
2,109,476	-				+0.8
2,109,548	+				+0.2
2,109,575	+				+1.3
2,109,588	+				-0.2
2,109,588	+				+1.6
2,109,588	+				+0.6
2,109,588	+				-0.9
2,109,602	+				-0.0
2,109,677	+				+0.4
2,109,690	+				+0.2
2,109,691	-				-0.5
2,109,811	-		Sama_1724	0.15	-3.0
2,109,885	+		Sama_1724	0.18	-0.4
2,109,894	+		Sama_1724	0.19	-0.8
2,109,969	+		Sama_1724	0.23	+0.0
2,109,969	+		Sama_1724	0.23	+0.0
2,109,969	+		Sama_1724	0.23	+3.8
2,109,970	-		Sama_1724	0.23	-0.7
2,109,970	-		Sama_1724	0.23	-2.2
2,109,979	+		Sama_1724	0.23	+0.9
2,109,980	-		Sama_1724	0.23	-0.5
2,110,012	+		Sama_1724	0.25	+0.4
2,110,012	+		Sama_1724	0.25	+0.9
2,110,030	-		Sama_1724	0.26	-0.2
2,110,047	+		Sama_1724	0.26	-0.8
2,110,106	+		Sama_1724	0.29	-1.2
2,110,106	+		Sama_1724	0.29	+0.6
2,110,131	-		Sama_1724	0.31	-0.2
2,110,143	+		Sama_1724	0.31	+1.8
2,110,146	+		Sama_1724	0.31	+0.2
2,110,243	-		Sama_1724	0.36	+0.4
2,110,248	+		Sama_1724	0.36	+0.4
2,110,248	+		Sama_1724	0.36	+0.2
2,110,248	+		Sama_1724	0.36	-0.1