Strain Fitness in Shewanella amazonensis SB2B around Sama_1606

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,961,036	+				+0.4
1,961,036	+				-0.1
1,961,037	-				+0.5
1,961,037	-				+0.3
1,961,197	+		Sama_1604	0.80	+0.7
1,961,229	+				+0.6
1,961,229	+				+0.9
1,961,237	+				-0.4
1,961,237	+				-3.2
1,961,238	-				+0.8
1,961,238	-				-1.0
1,961,246	+				+0.7
1,961,246	+				-0.6
1,961,247	-				+0.4
1,961,278	+				+0.1
1,961,279	-				-0.5
1,961,316	+				+0.6
1,961,317	-				+0.2
1,961,334	+				+1.1
1,961,334	+				-0.8
1,961,372	-				-1.7
1,961,372	-				-1.2
1,961,372	-				+0.2
1,961,419	-				-2.1
1,961,513	-		Sama_1605	0.18	-3.1
1,961,942	-				-1.4
1,961,942	-				-3.7
1,961,946	-				-3.0
1,961,960	-				-1.6
1,962,016	-				-0.6
1,962,131	-				-2.1
1,962,146	-				-1.4
1,962,219	+		Sama_1606	0.12	-1.2
1,962,219	+		Sama_1606	0.12	-2.6
1,962,524	+		Sama_1606	0.29	+0.2
1,962,525	-		Sama_1606	0.30	-2.1
1,962,525	-		Sama_1606	0.30	-1.0
1,962,527	+		Sama_1606	0.30	-0.6
1,962,528	-		Sama_1606	0.30	-0.5
1,962,528	-		Sama_1606	0.30	+0.2
1,962,528	-		Sama_1606	0.30	-1.0
1,962,528	-		Sama_1606	0.30	+0.0
1,962,573	+		Sama_1606	0.32	-0.8
1,962,574	-		Sama_1606	0.32	+0.5
1,962,666	+		Sama_1606	0.38	-0.5
1,962,667	-		Sama_1606	0.38	-0.6
1,962,667	-		Sama_1606	0.38	-0.1
1,962,702	+		Sama_1606	0.40	-1.4
1,962,708	+		Sama_1606	0.40	-0.4
1,962,708	+		Sama_1606	0.40	-1.8
1,962,709	-		Sama_1606	0.40	-2.0
1,962,709	-		Sama_1606	0.40	+0.2
1,962,844	+		Sama_1606	0.48	-1.8
1,962,845	-		Sama_1606	0.48	-2.4
1,962,891	+		Sama_1606	0.51	-1.1
1,962,891	+		Sama_1606	0.51	-0.3
1,962,893	+		Sama_1606	0.51	-0.7
1,962,893	+		Sama_1606	0.51	-0.2
1,962,894	-		Sama_1606	0.51	-1.8
1,963,054	-		Sama_1606	0.60	-0.8
1,963,155	+		Sama_1606	0.66	-1.8
1,963,213	+		Sama_1606	0.69	-1.4
1,963,213	+		Sama_1606	0.69	+0.0
1,963,227	+		Sama_1606	0.70	-1.1
1,963,228	-		Sama_1606	0.70	-0.9
1,963,289	+		Sama_1606	0.74	-1.5
1,963,290	-		Sama_1606	0.74	-0.3
1,963,298	-		Sama_1606	0.74	-0.5
1,963,298	-		Sama_1606	0.74	-1.1
1,963,303	+		Sama_1606	0.74	-0.3
1,963,303	+		Sama_1606	0.74	-1.7
1,963,304	-		Sama_1606	0.75	-0.0
1,963,305	+		Sama_1606	0.75	-1.4
1,963,335	+		Sama_1606	0.76	-1.4
1,963,392	-		Sama_1606	0.80	-0.1
1,963,392	-		Sama_1606	0.80	-1.6
1,963,649	+				+0.2
1,963,649	+				-1.2
1,963,744	+				-0.9
1,963,745	-				+0.8
1,963,745	-				-0.3
1,963,780	-				-1.8
1,963,784	+				+0.5
1,963,832	-				-1.1
1,963,876	+				-0.4
1,963,910	+				-0.3
1,963,910	+				+0.1
1,963,911	-				+1.2
1,964,042	+				-1.4
1,964,042	+				-0.8
1,964,042	+				+0.7
1,964,083	-				-0.4
1,964,128	+				-0.0
1,964,178	-				-0.2
1,964,200	-				+0.0
1,964,283	+				-0.7
1,964,299	-				-0.4
1,964,303	+				+0.3
1,964,303	+				-0.5
1,964,303	+				+0.5
1,964,304	-				-0.3
1,964,491	+				-0.5
1,964,491	+				+0.4
1,964,491	+				+0.2
1,964,491	+				-0.5
1,964,494	+				+0.3
1,964,494	+				+0.5
1,964,551	+				+0.4
1,964,561	+				-0.3
1,964,562	-				+3.2
1,964,585	-				-0.0
1,964,587	-				-2.0
1,964,596	+				+0.8
1,964,596	+				-1.1
1,964,596	+				-1.4
1,964,596	+				+0.5
1,964,596	+				-1.5
1,964,596	+				+1.0
1,964,596	+				+0.3
1,964,596	+				-1.0
1,964,596	+				-1.0
1,964,596	+				-0.4
1,964,596	+				-1.2
1,964,596	+				-0.6
1,964,597	-				+0.5
1,964,597	-				+0.8
1,964,600	+				-0.2
1,964,600	+				+1.1
1,964,600	+				+0.2
1,964,600	+				+0.6
1,964,600	+				+0.6
1,964,601	-				-0.7
1,964,601	-				+0.8
1,964,646	-				-0.1
1,964,655	+				-0.4
1,964,655	+				+0.4
1,964,655	+				-0.9
1,964,707	+				-1.3
1,964,707	+				-2.1
1,964,708	-				-0.4
1,964,708	-				-0.2
1,964,709	+				+0.5