Strain Fitness in Shewanella amazonensis SB2B around Sama_1587

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,932,034	+	pepN	Sama_1586	0.67	+0.4
1,932,133	+	pepN	Sama_1586	0.71	+0.8
1,932,133	+	pepN	Sama_1586	0.71	-0.3
1,932,134	-	pepN	Sama_1586	0.71	+0.2
1,932,134	-	pepN	Sama_1586	0.71	-0.2
1,932,134	-	pepN	Sama_1586	0.71	-0.2
1,932,134	-	pepN	Sama_1586	0.71	-0.3
1,932,156	+	pepN	Sama_1586	0.72	-1.3
1,932,157	-	pepN	Sama_1586	0.72	+1.8
1,932,260	+	pepN	Sama_1586	0.76	-0.4
1,932,260	+	pepN	Sama_1586	0.76	+2.0
1,932,292	+	pepN	Sama_1586	0.78	+1.5
1,932,376	+	pepN	Sama_1586	0.81	-0.0
1,932,436	+	pepN	Sama_1586	0.83	+0.6
1,932,437	-	pepN	Sama_1586	0.83	+0.2
1,932,437	-	pepN	Sama_1586	0.83	+0.2
1,932,490	+	pepN	Sama_1586	0.85	-1.4
1,932,490	+	pepN	Sama_1586	0.85	+0.7
1,932,490	+	pepN	Sama_1586	0.85	-0.8
1,932,490	+	pepN	Sama_1586	0.85	-0.2
1,932,490	+	pepN	Sama_1586	0.85	+0.1
1,932,490	+	pepN	Sama_1586	0.85	+0.5
1,932,499	+	pepN	Sama_1586	0.86	+0.7
1,932,499	+	pepN	Sama_1586	0.86	+1.2
1,932,499	+	pepN	Sama_1586	0.86	+0.1
1,932,499	+	pepN	Sama_1586	0.86	+0.1
1,932,504	+	pepN	Sama_1586	0.86	+0.2
1,932,504	+	pepN	Sama_1586	0.86	+0.2
1,932,563	-	pepN	Sama_1586	0.88	+1.2
1,932,662	+				+0.5
1,932,681	-				-0.3
1,932,730	+				+0.6
1,932,843	+				-0.1
1,932,877	+				+0.7
1,932,880	-				-1.1
1,932,897	+				+0.2
1,932,898	-				+0.6
1,932,916	-				-1.1
1,932,916	-				-0.8
1,932,960	-				+0.5
1,932,988	+		Sama_1587	0.13	+0.5
1,933,055	+		Sama_1587	0.38	+0.5
1,933,223	+				+0.2
1,933,243	-				-0.5
1,933,490	+				+0.2
1,933,494	+				+0.3
1,933,496	+				+1.0
1,933,529	+				+0.4
1,933,529	+				+0.2
1,933,529	+				+1.0
1,933,530	-				-0.1
1,933,530	-				-0.4
1,933,530	-				+0.2
1,933,608	-				+1.2
1,933,608	-				-2.2
1,933,782	+		Sama_1588	0.12	-0.5
1,933,783	-		Sama_1588	0.12	-1.1
1,933,783	-		Sama_1588	0.12	-0.3
1,933,818	+		Sama_1588	0.14	-0.5
1,933,818	+		Sama_1588	0.14	-2.3
1,933,818	+		Sama_1588	0.14	-1.2
1,933,819	-		Sama_1588	0.14	+1.2
1,933,826	+		Sama_1588	0.14	+0.6
1,933,826	+		Sama_1588	0.14	-0.6
1,933,826	+		Sama_1588	0.14	-0.1
1,933,846	+		Sama_1588	0.15	+1.2
1,933,846	+		Sama_1588	0.15	+0.7
1,933,851	+		Sama_1588	0.15	-0.8
1,933,944	+		Sama_1588	0.20	+1.1
1,933,945	-		Sama_1588	0.20	-1.3
1,933,950	+		Sama_1588	0.20	+0.2
1,933,951	-		Sama_1588	0.20	-0.5
1,933,958	+		Sama_1588	0.20	+0.0
1,933,958	+		Sama_1588	0.20	+1.0
1,934,003	+		Sama_1588	0.23	+0.1
1,934,004	-		Sama_1588	0.23	+0.2
1,934,004	-		Sama_1588	0.23	-0.5
1,934,051	+		Sama_1588	0.25	-0.1
1,934,052	-		Sama_1588	0.25	-0.8
1,934,163	-		Sama_1588	0.30	+0.8
1,934,182	+		Sama_1588	0.31	-0.4
1,934,182	+		Sama_1588	0.31	-0.8
1,934,182	+		Sama_1588	0.31	-0.8
1,934,182	+		Sama_1588	0.31	-0.3
1,934,182	+		Sama_1588	0.31	-1.1
1,934,182	+		Sama_1588	0.31	-0.9
1,934,183	-		Sama_1588	0.31	-0.0
1,934,183	-		Sama_1588	0.31	+0.7
1,934,183	-		Sama_1588	0.31	-0.2
1,934,183	-		Sama_1588	0.31	-0.1
1,934,183	-		Sama_1588	0.31	-0.5
1,934,183	-		Sama_1588	0.31	+0.8
1,934,188	+		Sama_1588	0.32	-0.4
1,934,188	+		Sama_1588	0.32	-0.8
1,934,189	-		Sama_1588	0.32	+1.2
1,934,192	+		Sama_1588	0.32	-0.9
1,934,216	+		Sama_1588	0.33	-0.2