Strain Fitness in Shewanella amazonensis SB2B around Sama_1393

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,683,820	+		Sama_1392	0.55	-0.4
1,683,837	+		Sama_1392	0.56	-1.0
1,683,888	+		Sama_1392	0.59	+0.0
1,683,919	+		Sama_1392	0.60	-0.4
1,683,920	-		Sama_1392	0.60	+0.1
1,683,920	-		Sama_1392	0.60	+1.3
1,683,954	+		Sama_1392	0.62	+0.3
1,683,980	+		Sama_1392	0.63	-0.3
1,683,980	+		Sama_1392	0.63	-1.1
1,683,980	+		Sama_1392	0.63	-0.4
1,683,980	+		Sama_1392	0.63	+0.1
1,683,980	+		Sama_1392	0.63	+0.3
1,683,980	+		Sama_1392	0.63	+0.8
1,683,980	+		Sama_1392	0.63	-1.0
1,683,980	+		Sama_1392	0.63	-0.7
1,683,980	+		Sama_1392	0.63	-0.1
1,683,980	+		Sama_1392	0.63	-0.2
1,683,981	-		Sama_1392	0.63	-0.5
1,683,981	-		Sama_1392	0.63	-0.7
1,683,981	-		Sama_1392	0.63	-1.0
1,683,981	-		Sama_1392	0.63	-0.0
1,683,981	-		Sama_1392	0.63	+0.3
1,683,981	-		Sama_1392	0.63	+0.1
1,683,981	-		Sama_1392	0.63	-0.3
1,684,013	+		Sama_1392	0.65	+0.5
1,684,031	+		Sama_1392	0.66	+0.7
1,684,031	+		Sama_1392	0.66	+1.6
1,684,031	+		Sama_1392	0.66	-1.7
1,684,031	+		Sama_1392	0.66	-0.5
1,684,031	+		Sama_1392	0.66	+1.3
1,684,032	-		Sama_1392	0.66	+0.0
1,684,073	+		Sama_1392	0.68	-2.3
1,684,088	-		Sama_1392	0.69	-0.7
1,684,088	-		Sama_1392	0.69	+1.1
1,684,088	-		Sama_1392	0.69	-1.3
1,684,165	-		Sama_1392	0.73	-0.3
1,684,255	+		Sama_1392	0.78	-1.3
1,684,303	+		Sama_1392	0.80	-0.3
1,684,351	+		Sama_1392	0.83	+0.3
1,684,351	+		Sama_1392	0.83	-0.4
1,684,362	+		Sama_1392	0.83	-0.2
1,684,385	+		Sama_1392	0.84	+0.7
1,684,395	+		Sama_1392	0.85	+0.5
1,684,395	+		Sama_1392	0.85	+0.4
1,684,396	-		Sama_1392	0.85	+0.3
1,684,432	-		Sama_1392	0.87	+0.8
1,684,468	+		Sama_1392	0.89	-0.3
1,684,469	-		Sama_1392	0.89	+0.5
1,684,497	+				-0.3
1,684,526	+				-0.1
1,684,527	-				+0.3
1,684,627	+				-0.1
1,684,627	+				-0.3
1,684,628	-				-1.5
1,684,716	+				+0.4
1,684,838	+		Sama_1393	0.18	-0.3
1,684,879	-		Sama_1393	0.26	-0.2
1,684,879	-		Sama_1393	0.26	+0.8
1,684,879	-		Sama_1393	0.26	-1.0
1,684,879	-		Sama_1393	0.26	+0.2
1,684,949	+		Sama_1393	0.38	+0.2
1,684,976	+		Sama_1393	0.43	-0.9
1,684,976	+		Sama_1393	0.43	+0.3
1,684,976	+		Sama_1393	0.43	+0.6
1,684,976	+		Sama_1393	0.43	+0.3
1,684,976	+		Sama_1393	0.43	+0.5
1,684,976	+		Sama_1393	0.43	-0.6
1,684,976	+		Sama_1393	0.43	+1.1
1,684,977	-		Sama_1393	0.43	+0.3
1,684,977	-		Sama_1393	0.43	-0.1
1,684,977	-		Sama_1393	0.43	-1.7
1,684,988	+		Sama_1393	0.45	+0.9
1,684,988	+		Sama_1393	0.45	-2.0
1,684,989	-		Sama_1393	0.45	+0.5
1,684,989	-		Sama_1393	0.45	+0.2
1,685,005	+		Sama_1393	0.48	+0.1
1,685,036	+		Sama_1393	0.54	+0.5
1,685,036	+		Sama_1393	0.54	+0.3
1,685,042	+		Sama_1393	0.55	-1.0
1,685,042	+		Sama_1393	0.55	-1.1
1,685,043	-		Sama_1393	0.55	+0.5
1,685,043	-		Sama_1393	0.55	-0.4
1,685,171	+		Sama_1393	0.78	+0.7
1,685,217	+		Sama_1393	0.86	-0.3
1,685,218	-		Sama_1393	0.86	-1.3
1,685,218	-		Sama_1393	0.86	+1.3
1,685,218	-		Sama_1393	0.86	+0.7
1,685,222	+		Sama_1393	0.87	-1.0
1,685,223	-		Sama_1393	0.87	+0.4
1,685,223	-		Sama_1393	0.87	-1.1
1,685,344	+				-0.1
1,685,344	+				+0.4
1,685,345	-				-0.3
1,685,370	+				+0.1
1,685,371	-				+1.0
1,685,438	+				-1.3
1,685,439	-				+0.2
1,685,439	-				-0.4
1,685,439	-				-1.5
1,685,490	+				-2.9
1,685,532	-				-0.7
1,685,532	-				-1.3
1,685,588	+				+1.3
1,685,593	-				-0.7
1,685,646	-				-3.6
1,685,716	-		Sama_1394	0.13	-1.7
1,685,781	-		Sama_1394	0.16	-2.4
1,685,781	-		Sama_1394	0.16	-3.0
1,685,785	-		Sama_1394	0.16	-2.4
1,685,803	-		Sama_1394	0.17	-2.2
1,685,803	-		Sama_1394	0.17	-1.6
1,685,819	+		Sama_1394	0.18	-2.9
1,685,820	-		Sama_1394	0.18	-2.3
1,685,820	-		Sama_1394	0.18	-2.0
1,685,856	-		Sama_1394	0.20	-1.3
1,685,981	+		Sama_1394	0.25	-0.7
1,686,019	+		Sama_1394	0.27	-2.0
1,686,021	-		Sama_1394	0.27	-3.6
1,686,157	-		Sama_1394	0.34	-3.6
1,686,157	-		Sama_1394	0.34	-1.0
1,686,159	-		Sama_1394	0.34	-3.2
1,686,172	-		Sama_1394	0.34	-0.5
1,686,176	+		Sama_1394	0.35	-2.5
1,686,176	+		Sama_1394	0.35	-1.7
1,686,267	-		Sama_1394	0.39	-2.4