Strain Fitness in Shewanella amazonensis SB2B around Sama_1363

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,652,414	-		Sama_1362	0.22	-0.7
1,652,414	-		Sama_1362	0.22	-1.1
1,652,414	-		Sama_1362	0.22	+1.9
1,652,440	+		Sama_1362	0.24	-1.2
1,652,440	+		Sama_1362	0.24	+0.2
1,652,440	+		Sama_1362	0.24	-0.0
1,652,440	+		Sama_1362	0.24	+1.1
1,652,440	+		Sama_1362	0.24	+0.0
1,652,441	-		Sama_1362	0.24	-0.8
1,652,441	-		Sama_1362	0.24	-0.6
1,652,441	-		Sama_1362	0.24	+0.3
1,652,441	-		Sama_1362	0.24	-0.1
1,652,441	-		Sama_1362	0.24	-0.5
1,652,441	-		Sama_1362	0.24	-1.0
1,652,441	-		Sama_1362	0.24	+1.1
1,652,484	-		Sama_1362	0.28	-0.8
1,652,484	-		Sama_1362	0.28	+0.9
1,652,515	+		Sama_1362	0.31	+0.7
1,652,516	-		Sama_1362	0.31	+1.4
1,652,516	-		Sama_1362	0.31	-0.0
1,652,516	-		Sama_1362	0.31	-0.9
1,652,516	-		Sama_1362	0.31	-0.0
1,652,516	-		Sama_1362	0.31	+0.0
1,652,516	-		Sama_1362	0.31	-0.3
1,652,526	+		Sama_1362	0.32	+0.4
1,652,526	+		Sama_1362	0.32	-0.8
1,652,526	+		Sama_1362	0.32	+0.8
1,652,527	-		Sama_1362	0.32	-0.5
1,652,527	-		Sama_1362	0.32	+0.3
1,652,528	+		Sama_1362	0.32	+0.1
1,652,529	-		Sama_1362	0.32	-0.5
1,652,529	-		Sama_1362	0.32	+0.8
1,652,534	+		Sama_1362	0.32	+3.7
1,652,534	+		Sama_1362	0.32	+0.3
1,652,534	+		Sama_1362	0.32	-0.2
1,652,631	+		Sama_1362	0.41	+1.3
1,652,632	-		Sama_1362	0.41	-0.9
1,652,649	+		Sama_1362	0.42	-1.1
1,652,650	-		Sama_1362	0.42	+0.6
1,652,655	-		Sama_1362	0.43	+0.3
1,652,697	-		Sama_1362	0.46	+0.2
1,652,753	+		Sama_1362	0.51	+0.2
1,652,800	+		Sama_1362	0.55	+1.2
1,652,801	-		Sama_1362	0.55	-1.1
1,652,809	+		Sama_1362	0.56	-2.5
1,652,809	+		Sama_1362	0.56	-0.2
1,652,809	+		Sama_1362	0.56	-1.0
1,652,809	+		Sama_1362	0.56	+0.3
1,652,809	+		Sama_1362	0.56	+0.8
1,652,809	+		Sama_1362	0.56	-0.7
1,652,809	+		Sama_1362	0.56	+0.7
1,652,809	+		Sama_1362	0.56	+0.4
1,652,810	-		Sama_1362	0.56	-0.7
1,652,810	-		Sama_1362	0.56	-0.7
1,652,810	-		Sama_1362	0.56	-0.6
1,652,810	-		Sama_1362	0.56	+0.1
1,652,810	-		Sama_1362	0.56	-1.2
1,652,810	-		Sama_1362	0.56	-0.3
1,652,810	-		Sama_1362	0.56	-0.8
1,652,810	-		Sama_1362	0.56	+0.6
1,652,810	-		Sama_1362	0.56	-0.1
1,652,861	+		Sama_1362	0.60	-0.2
1,652,863	+		Sama_1362	0.60	-0.4
1,652,863	+		Sama_1362	0.60	+0.5
1,652,863	+		Sama_1362	0.60	-0.9
1,652,864	-		Sama_1362	0.60	+0.2
1,652,864	-		Sama_1362	0.60	-0.1
1,652,864	-		Sama_1362	0.60	-0.9
1,652,902	-		Sama_1362	0.64	+0.4
1,652,977	+		Sama_1362	0.70	-0.1
1,652,977	+		Sama_1362	0.70	-1.1
1,652,977	+		Sama_1362	0.70	+0.1
1,652,978	-		Sama_1362	0.70	-0.3
1,652,978	-		Sama_1362	0.70	+0.2
1,653,047	-		Sama_1362	0.76	+1.2
1,653,110	-		Sama_1362	0.81	+0.7
1,653,131	-		Sama_1362	0.83	-0.0
1,653,276	-				-0.9
1,653,341	-				+0.3
1,653,341	-				+0.6
1,653,362	-				-2.0
1,653,362	-				+1.5
1,653,362	-				+0.3
1,653,362	-				+1.8
1,653,370	+				+0.1
1,653,370	+				+0.8
1,653,371	-				-0.1
1,653,549	-		Sama_1363	0.34	-1.4
1,653,549	-		Sama_1363	0.34	-1.0
1,653,676	+		Sama_1363	0.65	-0.3
1,653,676	+		Sama_1363	0.65	-1.5
1,653,677	-		Sama_1363	0.66	-0.3
1,653,677	-		Sama_1363	0.66	-1.7
1,653,680	+		Sama_1363	0.66	-1.4
1,653,681	-		Sama_1363	0.67	-1.7
1,653,727	+		Sama_1363	0.78	-0.7
1,653,728	-		Sama_1363	0.78	-0.7
1,653,785	-				+1.7
1,653,785	-				+0.8
1,653,902	+				-0.4
1,653,903	-				+0.0
1,653,935	-				-0.2
1,653,979	-				+0.0
1,653,989	+				-0.4
1,653,997	+				+0.1
1,654,018	+				+0.5
1,654,024	-				+0.4
1,654,065	+				-0.4
1,654,065	+				+0.2
1,654,066	-				+0.5
1,654,080	-				-0.3
1,654,080	-				+0.6
1,654,091	+				+0.1
1,654,119	+				-0.7
1,654,120	-				+0.8
1,654,184	+				+0.3
1,654,184	+				-0.1
1,654,184	+				-0.4
1,654,184	+				+0.7
1,654,185	-				-0.4
1,654,199	-				+1.0
1,654,199	-				+0.2
1,654,199	-				+0.2
1,654,349	-				+0.5
1,654,350	+				+0.4
1,654,350	+				-0.7
1,654,350	+				+0.1
1,654,360	-				+0.3
1,654,380	-				+0.3
1,654,380	-				+0.7
1,654,380	-				-1.2
1,654,386	+		Sama_1364	0.10	+0.2
1,654,386	+		Sama_1364	0.10	+0.9
1,654,386	+		Sama_1364	0.10	+0.4
1,654,386	+		Sama_1364	0.10	+0.1
1,654,387	-		Sama_1364	0.10	-1.0
1,654,387	-		Sama_1364	0.10	+0.2
1,654,387	-		Sama_1364	0.10	+0.7
1,654,387	-		Sama_1364	0.10	-0.3
1,654,387	-		Sama_1364	0.10	-1.2
1,654,387	-		Sama_1364	0.10	-0.4
1,654,389	-		Sama_1364	0.10	-0.3
1,654,476	-		Sama_1364	0.15	-0.0
1,654,482	+		Sama_1364	0.15	+0.2
1,654,482	+		Sama_1364	0.15	-0.9
1,654,483	-		Sama_1364	0.15	-0.6
1,654,483	-		Sama_1364	0.15	-0.7
1,654,483	-		Sama_1364	0.15	+1.7
1,654,483	-		Sama_1364	0.15	-0.6
1,654,566	+		Sama_1364	0.20	-0.4
1,654,566	+		Sama_1364	0.20	+0.1
1,654,566	+		Sama_1364	0.20	-0.7
1,654,566	+		Sama_1364	0.20	+0.9
1,654,567	-		Sama_1364	0.20	-0.6
1,654,567	-		Sama_1364	0.20	+0.5
1,654,567	-		Sama_1364	0.20	-0.1
1,654,593	+		Sama_1364	0.21	+0.1
1,654,676	+		Sama_1364	0.25	+1.1
1,654,747	-		Sama_1364	0.29	+0.8
1,654,810	+		Sama_1364	0.32	+0.9
1,654,810	+		Sama_1364	0.32	+0.3