Strain Fitness in Shewanella amazonensis SB2B around Sama_1254

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,541,744	+		Sama_1253	0.62	+0.2
1,541,760	+		Sama_1253	0.62	+0.6
1,541,761	-		Sama_1253	0.62	-0.5
1,541,773	+		Sama_1253	0.63	+0.6
1,541,773	+		Sama_1253	0.63	-0.2
1,541,774	-		Sama_1253	0.63	-0.0
1,541,782	+		Sama_1253	0.64	+0.2
1,541,783	-		Sama_1253	0.64	-0.0
1,541,821	+		Sama_1253	0.66	-0.3
1,541,821	+		Sama_1253	0.66	+1.1
1,541,822	-		Sama_1253	0.66	-0.5
1,541,822	-		Sama_1253	0.66	+0.5
1,541,823	+		Sama_1253	0.66	+0.4
1,541,823	+		Sama_1253	0.66	+0.5
1,541,823	+		Sama_1253	0.66	-0.6
1,541,850	+		Sama_1253	0.67	+2.4
1,541,850	+		Sama_1253	0.67	-0.3
1,541,850	+		Sama_1253	0.67	-1.0
1,541,850	+		Sama_1253	0.67	+0.0
1,541,851	-		Sama_1253	0.68	-0.9
1,541,851	-		Sama_1253	0.68	-0.2
1,541,859	+		Sama_1253	0.68	-0.1
1,541,925	+		Sama_1253	0.72	+1.4
1,541,925	+		Sama_1253	0.72	-0.6
1,542,065	+		Sama_1253	0.80	+1.1
1,542,177	+		Sama_1253	0.86	+0.8
1,542,178	-		Sama_1253	0.86	+1.8
1,542,203	+		Sama_1253	0.87	-1.1
1,542,203	+		Sama_1253	0.87	-0.6
1,542,251	+				+0.4
1,542,301	+				+1.4
1,542,301	+				+0.0
1,542,302	-				-1.2
1,542,302	-				-0.2
1,542,309	+				+0.6
1,542,346	+				+2.1
1,542,346	+				+0.8
1,542,346	+				+0.6
1,542,346	+				-1.2
1,542,346	+				-1.6
1,542,346	+				+0.5
1,542,346	+				-0.4
1,542,346	+				+1.1
1,542,347	-				+0.0
1,542,347	-				-0.2
1,542,347	-				-0.4
1,542,348	+				+0.7
1,542,348	+				-0.3
1,542,348	+				-0.2
1,542,348	+				+0.6
1,542,348	+				+0.6
1,542,348	+				+0.1
1,542,348	+				+0.4
1,542,348	+				+1.0
1,542,349	-				+0.8
1,542,349	-				+0.8
1,542,349	-				+1.1
1,542,349	-				-0.7
1,542,419	+				+0.3
1,542,457	-				-1.4
1,542,463	-				+0.6
1,542,463	-				+2.0
1,542,463	-				+2.0
1,542,463	-				+0.2
1,542,472	+				+0.2
1,542,607	+				-1.5
1,542,607	+				-1.1
1,542,607	+				-1.8
1,542,607	+				-2.0
1,542,608	-				-2.8
1,542,608	-				+0.1
1,542,608	-				-2.4
1,542,650	+				-0.2
1,542,656	+				-1.2
1,542,705	+				-3.1
1,542,712	+				+0.4
1,542,712	+				-2.9
1,542,712	+				-0.2
1,542,857	+		Sama_1254	0.21	-1.2
1,542,858	-		Sama_1254	0.21	-1.8
1,542,938	+		Sama_1254	0.31	+0.4
1,542,982	+		Sama_1254	0.37	-0.0
1,543,190	+		Sama_1254	0.63	-1.7
1,543,301	+		Sama_1254	0.77	-2.4
1,543,338	-		Sama_1254	0.82	-0.9
1,543,338	-		Sama_1254	0.82	-0.6
1,543,487	+				-1.9
1,543,563	+				-2.4
1,543,564	-				-3.2
1,543,599	+				-2.2
1,543,863	+		Sama_1255	0.28	-2.4
1,543,884	+		Sama_1255	0.30	-1.6
1,544,039	+		Sama_1255	0.41	-0.6
1,544,095	+		Sama_1255	0.46	-0.6
1,544,095	+		Sama_1255	0.46	-1.0
1,544,096	-		Sama_1255	0.46	-1.6
1,544,302	+		Sama_1255	0.61	-1.8
1,544,405	+		Sama_1255	0.68	-1.6