Strain Fitness in Shewanella amazonensis SB2B around Sama_1235

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,518,282	-				-0.4
1,518,354	+		Sama_1234	0.12	-1.6
1,518,367	-		Sama_1234	0.13	-2.6
1,518,556	-		Sama_1234	0.32	-0.2
1,518,596	-		Sama_1234	0.35	-1.6
1,519,065	+		Sama_1234	0.81	-1.9
1,519,156	-		Sama_1234	0.90	-0.6
1,519,156	-		Sama_1234	0.90	-1.9
1,519,212	-				-2.2
1,519,252	-				-2.1
1,519,252	-				-0.6
1,519,252	-				+0.4
1,519,252	-				-2.1
1,519,252	-				-2.9
1,519,256	-				-1.2
1,519,256	-				-1.9
1,519,329	+				-1.2
1,519,330	-				-0.8
1,519,512	+		Sama_1235	0.15	-1.0
1,519,513	-		Sama_1235	0.15	-1.0
1,519,608	-		Sama_1235	0.21	-1.0
1,519,650	-		Sama_1235	0.24	-2.2
1,519,650	-		Sama_1235	0.24	-1.4
1,519,650	-		Sama_1235	0.24	-0.8
1,519,699	-		Sama_1235	0.27	-1.5
1,519,730	+		Sama_1235	0.29	-1.9
1,519,730	+		Sama_1235	0.29	-0.6
1,519,731	-		Sama_1235	0.29	-1.9
1,519,821	-		Sama_1235	0.34	-1.1
1,519,821	-		Sama_1235	0.34	-0.8
1,519,839	-		Sama_1235	0.35	-1.4
1,519,851	-		Sama_1235	0.36	-1.2
1,519,906	+		Sama_1235	0.40	-1.9
1,519,906	+		Sama_1235	0.40	+0.1
1,519,929	+		Sama_1235	0.41	-0.9
1,519,930	-		Sama_1235	0.41	-0.2
1,519,934	-		Sama_1235	0.41	-3.1
1,519,934	-		Sama_1235	0.41	-1.9
1,519,934	-		Sama_1235	0.41	-3.2
1,520,038	-		Sama_1235	0.48	-1.6
1,520,123	-		Sama_1235	0.53	-1.4
1,520,154	-		Sama_1235	0.55	-1.4
1,520,154	-		Sama_1235	0.55	-0.9
1,520,167	+		Sama_1235	0.56	-1.2
1,520,216	+		Sama_1235	0.59	-2.2
1,520,231	+		Sama_1235	0.60	-1.2
1,520,232	-		Sama_1235	0.60	-2.8
1,520,530	+		Sama_1235	0.78	-0.2
1,520,531	-		Sama_1235	0.78	-2.8
1,520,660	-		Sama_1235	0.86	-1.4
1,520,663	-		Sama_1235	0.86	-3.6
1,520,663	-		Sama_1235	0.86	-1.8
1,520,663	-		Sama_1235	0.86	-1.6
1,520,702	+		Sama_1235	0.88	-1.9
1,520,705	-		Sama_1235	0.89	-0.6
1,520,705	-		Sama_1235	0.89	-2.6
1,520,725	+		Sama_1235	0.90	-1.6
1,520,725	+		Sama_1235	0.90	+0.4
1,520,726	-		Sama_1235	0.90	-2.4
1,520,726	-		Sama_1235	0.90	-1.2
1,520,773	-				-0.0
1,520,787	-				-1.9
1,520,930	-				-0.8
1,520,961	+				-0.1
1,520,961	+				-1.6
1,520,961	+				-0.3
1,520,961	+				+0.6
1,520,961	+				-0.1
1,520,962	-				-0.8
1,520,962	-				+1.0
1,520,962	-				-0.8
1,521,012	+				+1.6
1,521,012	+				+1.6
1,521,013	-				-0.6
1,521,013	-				+0.2
1,521,232	+		Sama_1236	0.25	-0.8
1,521,278	+		Sama_1236	0.30	+0.6
1,521,278	+		Sama_1236	0.30	-0.9
1,521,278	+		Sama_1236	0.30	+0.0
1,521,278	+		Sama_1236	0.30	+1.0
1,521,279	-		Sama_1236	0.30	-0.2
1,521,279	-		Sama_1236	0.30	+1.0
1,521,279	-		Sama_1236	0.30	-0.2
1,521,279	-		Sama_1236	0.30	+0.2
1,521,279	-		Sama_1236	0.30	+0.4
1,521,279	-		Sama_1236	0.30	+1.4
1,521,279	-		Sama_1236	0.30	+0.9
1,521,279	-		Sama_1236	0.30	+0.2
1,521,279	-		Sama_1236	0.30	+0.8
1,521,329	+		Sama_1236	0.34	+1.4
1,521,330	-		Sama_1236	0.34	+1.1
1,521,355	+		Sama_1236	0.37	-0.6
1,521,415	-		Sama_1236	0.42	+0.6
1,521,472	+		Sama_1236	0.48	-1.6
1,521,472	+		Sama_1236	0.48	+0.4
1,521,473	-		Sama_1236	0.48	+0.6
1,521,473	-		Sama_1236	0.48	-0.3
1,521,473	-		Sama_1236	0.48	-0.1
1,521,572	+		Sama_1236	0.57	+0.6
1,521,572	+		Sama_1236	0.57	+0.4
1,521,572	+		Sama_1236	0.57	+0.1
1,521,573	-		Sama_1236	0.57	-1.6
1,521,643	-		Sama_1236	0.64	-0.6
1,521,643	-		Sama_1236	0.64	-0.9
1,521,651	+		Sama_1236	0.64	+0.4
1,521,652	-		Sama_1236	0.64	+0.1
1,521,658	+		Sama_1236	0.65	-1.2
1,521,683	-		Sama_1236	0.67	+0.2
1,521,845	-		Sama_1236	0.82	+0.1
1,521,872	+		Sama_1236	0.85	-0.7
1,521,872	+		Sama_1236	0.85	+0.4
1,521,873	-		Sama_1236	0.85	+0.4
1,521,876	+		Sama_1236	0.85	+1.1
1,521,877	-		Sama_1236	0.85	+0.4
1,521,877	-		Sama_1236	0.85	+1.6
1,521,877	-		Sama_1236	0.85	-0.0
1,521,877	-		Sama_1236	0.85	+1.5