Strain Fitness in Shewanella amazonensis SB2B around Sama_0865

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,055,669	+		Sama_0864	0.62	-1.0
1,055,670	-		Sama_0864	0.62	-0.7
1,055,671	+		Sama_0864	0.62	+0.2
1,055,691	+		Sama_0864	0.63	-0.6
1,055,691	+		Sama_0864	0.63	+0.4
1,055,691	+		Sama_0864	0.63	+0.3
1,055,692	-		Sama_0864	0.63	-1.2
1,055,692	-		Sama_0864	0.63	+0.9
1,055,692	-		Sama_0864	0.63	+0.2
1,055,692	-		Sama_0864	0.63	+0.7
1,055,729	+		Sama_0864	0.64	+0.6
1,055,730	-		Sama_0864	0.64	-0.4
1,055,730	-		Sama_0864	0.64	-1.2
1,055,737	+		Sama_0864	0.65	+0.2
1,055,738	-		Sama_0864	0.65	-0.1
1,055,805	+		Sama_0864	0.68	-0.7
1,055,906	+		Sama_0864	0.72	+2.3
1,055,906	+		Sama_0864	0.72	+0.7
1,055,906	+		Sama_0864	0.72	-0.0
1,055,906	+		Sama_0864	0.72	+1.4
1,055,906	+		Sama_0864	0.72	-1.4
1,055,906	+		Sama_0864	0.72	+0.1
1,055,907	-		Sama_0864	0.72	-0.8
1,055,907	-		Sama_0864	0.72	-1.4
1,055,907	-		Sama_0864	0.72	-1.1
1,055,907	-		Sama_0864	0.72	+0.6
1,055,907	-		Sama_0864	0.72	+0.6
1,055,907	-		Sama_0864	0.72	+0.3
1,055,907	-		Sama_0864	0.72	-1.0
1,055,961	+		Sama_0864	0.75	+0.1
1,055,961	+		Sama_0864	0.75	-1.4
1,055,962	-		Sama_0864	0.75	+0.6
1,055,962	-		Sama_0864	0.75	-0.1
1,055,962	-		Sama_0864	0.75	+0.0
1,055,984	+		Sama_0864	0.76	+0.6
1,055,984	+		Sama_0864	0.76	+0.3
1,055,984	+		Sama_0864	0.76	+0.6
1,055,984	+		Sama_0864	0.76	-0.7
1,055,985	-		Sama_0864	0.76	+0.3
1,055,985	-		Sama_0864	0.76	+0.6
1,055,985	-		Sama_0864	0.76	+0.1
1,055,985	-		Sama_0864	0.76	-0.6
1,055,985	-		Sama_0864	0.76	-1.2
1,056,002	-		Sama_0864	0.76	-0.2
1,056,097	+		Sama_0864	0.81	+0.9
1,056,163	+		Sama_0864	0.84	+0.5
1,056,164	-		Sama_0864	0.84	+0.9
1,056,164	-		Sama_0864	0.84	+0.8
1,056,202	-		Sama_0864	0.85	+0.8
1,056,208	+		Sama_0864	0.86	+0.3
1,056,208	+		Sama_0864	0.86	-0.0
1,056,208	+		Sama_0864	0.86	-0.3
1,056,208	+		Sama_0864	0.86	-0.2
1,056,208	+		Sama_0864	0.86	-0.7
1,056,208	+		Sama_0864	0.86	-0.3
1,056,209	-		Sama_0864	0.86	-2.1
1,056,217	+		Sama_0864	0.86	+0.2
1,056,217	+		Sama_0864	0.86	-0.2
1,056,218	-		Sama_0864	0.86	+2.0
1,056,273	+		Sama_0864	0.89	-0.6
1,056,273	+		Sama_0864	0.89	-0.5
1,056,274	-		Sama_0864	0.89	-0.5
1,056,274	-		Sama_0864	0.89	+1.6
1,056,346	+				-0.0
1,056,347	-				+0.0
1,056,386	+				+0.7
1,056,386	+				+0.2
1,056,387	-				-0.1
1,056,391	+				-0.1
1,056,490	+				-0.6
1,056,491	-				-0.7
1,056,526	+				+0.6
1,056,531	+				+0.9
1,056,531	+				+0.8
1,056,531	+				+0.3
1,056,532	-				+0.0
1,056,532	-				-2.2
1,056,532	-				-1.3
1,056,532	-				-0.2
1,056,532	-				-0.4
1,056,554	+				-0.4
1,056,554	+				-0.6
1,056,554	+				+1.5
1,056,555	-				-0.3
1,056,555	-				-2.4
1,056,589	+				-0.2
1,056,589	+				+1.8
1,056,604	+				+1.0
1,056,604	+				-0.1
1,056,604	+				-0.2
1,056,604	+				-1.3
1,056,605	-				-1.2
1,056,605	-				-1.4
1,056,673	+				-0.0
1,056,674	-				-1.6
1,056,692	-				+0.1
1,056,692	-				+0.3
1,056,708	+		Sama_0865	0.11	+0.7
1,056,708	+		Sama_0865	0.11	-1.8
1,056,708	+		Sama_0865	0.11	+0.1
1,056,708	+		Sama_0865	0.11	-1.8
1,056,708	+		Sama_0865	0.11	-0.2
1,056,708	+		Sama_0865	0.11	-1.0
1,056,708	+		Sama_0865	0.11	-0.5
1,056,709	-		Sama_0865	0.11	-2.2
1,056,758	+		Sama_0865	0.17	+0.3
1,056,758	+		Sama_0865	0.17	-1.0
1,056,759	-		Sama_0865	0.17	-0.0
1,056,787	+		Sama_0865	0.21	+0.3
1,056,788	-		Sama_0865	0.21	-1.1
1,056,827	+		Sama_0865	0.26	-2.7
1,056,828	-		Sama_0865	0.26	-2.7
1,056,828	-		Sama_0865	0.26	+0.6
1,056,828	-		Sama_0865	0.26	-0.0
1,056,828	-		Sama_0865	0.26	-1.4
1,056,828	-		Sama_0865	0.26	-0.8
1,056,830	+		Sama_0865	0.26	-0.4
1,056,830	+		Sama_0865	0.26	-0.7
1,056,848	+		Sama_0865	0.29	+0.1
1,056,848	+		Sama_0865	0.29	-0.9
1,056,849	-		Sama_0865	0.29	-0.6
1,056,853	+		Sama_0865	0.29	-1.8
1,056,871	+		Sama_0865	0.32	-0.4
1,057,024	+		Sama_0865	0.52	-3.0
1,057,024	+		Sama_0865	0.52	-2.6
1,057,025	-		Sama_0865	0.52	+0.3
1,057,025	-		Sama_0865	0.52	-1.0
1,057,029	-		Sama_0865	0.52	-0.6
1,057,051	+		Sama_0865	0.55	-0.2
1,057,052	-		Sama_0865	0.55	-0.3
1,057,052	-		Sama_0865	0.55	-2.2
1,057,107	+		Sama_0865	0.62	-0.4
1,057,107	+		Sama_0865	0.62	+0.8
1,057,108	-		Sama_0865	0.63	-1.7
1,057,108	-		Sama_0865	0.63	-0.7
1,057,108	-		Sama_0865	0.63	-0.3
1,057,108	-		Sama_0865	0.63	-0.6
1,057,108	-		Sama_0865	0.63	-1.2
1,057,163	+		Sama_0865	0.70	+0.6
1,057,163	+		Sama_0865	0.70	-1.2
1,057,164	-		Sama_0865	0.70	-0.7
1,057,188	+		Sama_0865	0.73	+0.9
1,057,188	+		Sama_0865	0.73	+0.2
1,057,189	-		Sama_0865	0.73	-1.8
1,057,189	-		Sama_0865	0.73	+0.4
1,057,189	-		Sama_0865	0.73	-0.9
1,057,230	-		Sama_0865	0.79	-1.0
1,057,239	+		Sama_0865	0.80	-0.3
1,057,239	+		Sama_0865	0.80	-1.2
1,057,245	+		Sama_0865	0.80	-1.7
1,057,245	+		Sama_0865	0.80	-2.3
1,057,245	+		Sama_0865	0.80	-0.3
1,057,246	-		Sama_0865	0.81	-0.5
1,057,246	-		Sama_0865	0.81	+0.4
1,057,261	+		Sama_0865	0.83	-0.7
1,057,261	+		Sama_0865	0.83	-1.4
1,057,261	+		Sama_0865	0.83	-0.5
1,057,262	-		Sama_0865	0.83	-0.3
1,057,262	-		Sama_0865	0.83	-1.3
1,057,262	-		Sama_0865	0.83	+1.0
1,057,262	-		Sama_0865	0.83	-1.9
1,057,267	+		Sama_0865	0.83	-1.7
1,057,267	+		Sama_0865	0.83	-0.6
1,057,267	+		Sama_0865	0.83	+1.1
1,057,268	-		Sama_0865	0.83	-0.5
1,057,268	-		Sama_0865	0.83	+1.6
1,057,268	-		Sama_0865	0.83	-0.2
1,057,268	-		Sama_0865	0.83	-0.6
1,057,268	-		Sama_0865	0.83	-1.3
1,057,268	-		Sama_0865	0.83	-1.2
1,057,274	+		Sama_0865	0.84	-1.4
1,057,407	+				-0.1
1,057,457	+				+0.0
1,057,457	+				+1.6
1,057,458	-				+0.3
1,057,458	+				-0.2
1,057,528	+		Sama_0866	0.12	-0.3
1,057,529	-		Sama_0866	0.12	+0.9
1,057,536	+		Sama_0866	0.13	+0.7
1,057,536	+		Sama_0866	0.13	+0.6
1,057,536	+		Sama_0866	0.13	-0.7
1,057,536	+		Sama_0866	0.13	+0.4
1,057,536	+		Sama_0866	0.13	-0.2
1,057,536	+		Sama_0866	0.13	-0.6
1,057,536	+		Sama_0866	0.13	+0.1
1,057,536	+		Sama_0866	0.13	-1.7
1,057,536	+		Sama_0866	0.13	-0.2
1,057,536	+		Sama_0866	0.13	-0.5
1,057,536	+		Sama_0866	0.13	+0.1
1,057,536	+		Sama_0866	0.13	-0.4
1,057,537	-		Sama_0866	0.13	-0.4
1,057,537	-		Sama_0866	0.13	-2.1
1,057,537	-		Sama_0866	0.13	+0.1
1,057,537	-		Sama_0866	0.13	+1.4
1,057,537	-		Sama_0866	0.13	+1.0
1,057,537	-		Sama_0866	0.13	-1.4
1,057,537	-		Sama_0866	0.13	-1.2
1,057,537	-		Sama_0866	0.13	-0.3
1,057,537	-		Sama_0866	0.13	+0.6
1,057,540	+		Sama_0866	0.13	-0.5
1,057,540	+		Sama_0866	0.13	+0.1
1,057,541	-		Sama_0866	0.13	-1.6
1,057,541	-		Sama_0866	0.13	+0.2
1,057,541	-		Sama_0866	0.13	+0.2
1,057,575	-		Sama_0866	0.17	+1.6
1,057,575	-		Sama_0866	0.17	+2.2
1,057,623	-		Sama_0866	0.23	+0.5
1,057,632	-		Sama_0866	0.24	+0.2
1,057,634	+		Sama_0866	0.25	+0.3
1,057,635	-		Sama_0866	0.25	+0.8
1,057,635	-		Sama_0866	0.25	-0.9
1,057,639	+		Sama_0866	0.25	+0.6
1,057,655	+		Sama_0866	0.27	-1.0
1,057,655	+		Sama_0866	0.27	+0.2
1,057,656	-		Sama_0866	0.27	-0.2
1,057,656	-		Sama_0866	0.27	-0.0
1,057,691	-		Sama_0866	0.32	+1.1
1,057,691	-		Sama_0866	0.32	+0.2
1,057,723	+		Sama_0866	0.36	-0.5
1,057,723	+		Sama_0866	0.36	-0.3
1,057,724	-		Sama_0866	0.36	-0.3
1,057,724	-		Sama_0866	0.36	-0.6
1,057,781	+		Sama_0866	0.43	+0.3
1,057,795	+		Sama_0866	0.45	+0.8
1,057,796	-		Sama_0866	0.45	-0.2
1,057,796	-		Sama_0866	0.45	-0.4
1,057,796	-		Sama_0866	0.45	-0.4
1,057,796	-		Sama_0866	0.45	+0.3
1,057,796	-		Sama_0866	0.45	-0.0
1,057,796	-		Sama_0866	0.45	-1.4
1,057,796	-		Sama_0866	0.45	-0.0
1,057,798	-		Sama_0866	0.45	+0.0
1,057,798	-		Sama_0866	0.45	-1.4
1,057,839	+		Sama_0866	0.50	-0.0
1,057,883	+		Sama_0866	0.56	+0.4
1,057,883	+		Sama_0866	0.56	+0.4
1,057,883	+		Sama_0866	0.56	+0.1
1,057,884	-		Sama_0866	0.56	-0.2
1,057,884	-		Sama_0866	0.56	-0.0
1,057,884	-		Sama_0866	0.56	-0.2
1,057,887	+		Sama_0866	0.56	+0.3
1,057,887	+		Sama_0866	0.56	+0.2
1,057,887	+		Sama_0866	0.56	-0.7
1,057,888	-		Sama_0866	0.56	+0.7
1,057,888	-		Sama_0866	0.56	-1.2
1,057,888	-		Sama_0866	0.56	-1.4
1,057,943	+		Sama_0866	0.63	-0.2
1,057,943	+		Sama_0866	0.63	-0.1
1,057,943	+		Sama_0866	0.63	-0.9
1,057,943	+		Sama_0866	0.63	-0.2
1,057,944	-		Sama_0866	0.63	+0.2
1,057,944	-		Sama_0866	0.63	-0.2
1,057,944	-		Sama_0866	0.63	-1.6
1,057,988	-		Sama_0866	0.69	+1.5
1,057,988	-		Sama_0866	0.69	+1.2
1,058,017	+		Sama_0866	0.72	-0.1
1,058,017	+		Sama_0866	0.72	-0.1
1,058,017	+		Sama_0866	0.72	-0.7
1,058,017	+		Sama_0866	0.72	+0.7
1,058,017	+		Sama_0866	0.72	+2.4
1,058,017	+		Sama_0866	0.72	+0.3
1,058,018	-		Sama_0866	0.72	-1.5
1,058,018	-		Sama_0866	0.72	-0.1
1,058,018	-		Sama_0866	0.72	+0.6
1,058,018	-		Sama_0866	0.72	+0.0
1,058,018	-		Sama_0866	0.72	+0.6
1,058,018	-		Sama_0866	0.72	+0.1
1,058,019	+		Sama_0866	0.72	-1.2
1,058,019	+		Sama_0866	0.72	+1.6
1,058,019	+		Sama_0866	0.72	+0.3
1,058,019	+		Sama_0866	0.72	+0.3
1,058,019	+		Sama_0866	0.72	+0.1
1,058,020	-		Sama_0866	0.72	-0.2
1,058,020	-		Sama_0866	0.72	+0.3
1,058,020	-		Sama_0866	0.72	-0.4
1,058,020	-		Sama_0866	0.72	+1.1
1,058,020	-		Sama_0866	0.72	-1.2
1,058,020	-		Sama_0866	0.72	+1.6
1,058,020	-		Sama_0866	0.72	+0.8
1,058,057	+		Sama_0866	0.77	-1.2
1,058,057	+		Sama_0866	0.77	-1.0
1,058,058	-		Sama_0866	0.77	+0.6
1,058,058	-		Sama_0866	0.77	+0.2
1,058,090	-		Sama_0866	0.81	+1.6
1,058,106	-		Sama_0866	0.83	+1.4
1,058,149	+		Sama_0866	0.88	-0.3
1,058,149	+		Sama_0866	0.88	-0.4
1,058,149	+		Sama_0866	0.88	+0.9
1,058,163	+				+1.0
1,058,163	+				+0.8
1,058,209	+				+0.8