Strain Fitness in Shewanella amazonensis SB2B around Sama_0848

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
1,033,647	-		Sama_0847	0.55	+0.4
1,033,651	+		Sama_0847	0.55	+0.3
1,033,651	+		Sama_0847	0.55	-0.4
1,033,652	-		Sama_0847	0.55	+0.4
1,033,652	-		Sama_0847	0.55	+0.7
1,033,652	-		Sama_0847	0.55	-0.9
1,033,653	+		Sama_0847	0.55	+0.0
1,033,699	-		Sama_0847	0.58	+0.2
1,033,742	+		Sama_0847	0.60	+1.0
1,033,742	+		Sama_0847	0.60	+0.1
1,033,742	+		Sama_0847	0.60	-0.7
1,033,742	+		Sama_0847	0.60	+0.3
1,033,742	+		Sama_0847	0.60	-0.3
1,033,743	-		Sama_0847	0.60	+0.6
1,033,743	-		Sama_0847	0.60	+0.1
1,033,743	-		Sama_0847	0.60	+0.3
1,033,743	-		Sama_0847	0.60	+1.1
1,033,743	-		Sama_0847	0.60	+0.0
1,033,743	-		Sama_0847	0.60	+1.4
1,033,743	-		Sama_0847	0.60	+0.2
1,033,743	-		Sama_0847	0.60	+0.4
1,033,749	-		Sama_0847	0.60	+0.9
1,033,749	-		Sama_0847	0.60	-0.1
1,033,749	-		Sama_0847	0.60	-3.0
1,033,749	-		Sama_0847	0.60	-0.2
1,033,753	+		Sama_0847	0.60	-1.2
1,033,753	+		Sama_0847	0.60	+0.9
1,033,753	+		Sama_0847	0.60	+0.2
1,033,753	+		Sama_0847	0.60	+0.3
1,033,753	+		Sama_0847	0.60	+0.8
1,033,753	+		Sama_0847	0.60	+0.6
1,033,754	-		Sama_0847	0.60	+0.5
1,033,754	-		Sama_0847	0.60	-0.6
1,033,754	-		Sama_0847	0.60	+0.6
1,033,850	+		Sama_0847	0.65	+0.4
1,033,851	-		Sama_0847	0.65	-0.2
1,034,002	+		Sama_0847	0.72	+0.8
1,034,003	-		Sama_0847	0.72	+1.3
1,034,003	-		Sama_0847	0.72	+0.0
1,034,038	+		Sama_0847	0.74	-0.2
1,034,039	-		Sama_0847	0.74	+0.9
1,034,039	-		Sama_0847	0.74	+1.6
1,034,050	+		Sama_0847	0.74	+0.4
1,034,051	-		Sama_0847	0.74	+0.3
1,034,051	-		Sama_0847	0.74	-1.2
1,034,096	+		Sama_0847	0.76	+1.1
1,034,096	+		Sama_0847	0.76	+0.1
1,034,096	+		Sama_0847	0.76	+0.6
1,034,096	+		Sama_0847	0.76	+0.1
1,034,096	+		Sama_0847	0.76	+0.3
1,034,096	+		Sama_0847	0.76	+1.3
1,034,097	-		Sama_0847	0.77	+0.4
1,034,097	-		Sama_0847	0.77	+0.2
1,034,097	-		Sama_0847	0.77	+1.4
1,034,098	+		Sama_0847	0.77	+1.3
1,034,098	+		Sama_0847	0.77	+2.6
1,034,098	+		Sama_0847	0.77	+0.4
1,034,098	+		Sama_0847	0.77	-1.3
1,034,098	+		Sama_0847	0.77	+0.6
1,034,098	+		Sama_0847	0.77	+0.4
1,034,098	+		Sama_0847	0.77	-1.4
1,034,098	+		Sama_0847	0.77	+0.5
1,034,098	+		Sama_0847	0.77	-0.1
1,034,098	+		Sama_0847	0.77	+2.3
1,034,099	-		Sama_0847	0.77	+1.1
1,034,099	-		Sama_0847	0.77	+0.1
1,034,099	-		Sama_0847	0.77	-3.1
1,034,099	-		Sama_0847	0.77	+1.0
1,034,099	-		Sama_0847	0.77	-1.2
1,034,215	+		Sama_0847	0.82	-1.4
1,034,252	+		Sama_0847	0.84	+0.8
1,034,252	+		Sama_0847	0.84	-0.4
1,034,253	-		Sama_0847	0.84	-0.9
1,034,253	-		Sama_0847	0.84	+2.0
1,034,261	+		Sama_0847	0.84	-1.7
1,034,261	+		Sama_0847	0.84	-0.9
1,034,262	-		Sama_0847	0.84	-0.5
1,034,262	-		Sama_0847	0.84	+0.2
1,034,351	+		Sama_0847	0.89	+0.1
1,034,351	+		Sama_0847	0.89	-0.7
1,034,351	+		Sama_0847	0.89	-0.2
1,034,351	+		Sama_0847	0.89	-0.6
1,034,351	+		Sama_0847	0.89	-0.6
1,034,352	-		Sama_0847	0.89	-0.2
1,034,352	-		Sama_0847	0.89	-1.3
1,034,352	-		Sama_0847	0.89	-0.6
1,034,353	+		Sama_0847	0.89	+0.6
1,034,353	+		Sama_0847	0.89	-0.5
1,034,353	+		Sama_0847	0.89	+0.1
1,034,353	+		Sama_0847	0.89	+0.3
1,034,353	+		Sama_0847	0.89	+0.4
1,034,354	-		Sama_0847	0.89	-0.5
1,034,354	-		Sama_0847	0.89	-0.9
1,034,354	-		Sama_0847	0.89	+0.0
1,034,354	-		Sama_0847	0.89	-1.5
1,034,354	-		Sama_0847	0.89	+0.4
1,034,354	-		Sama_0847	0.89	-0.6
1,034,364	+		Sama_0847	0.89	+1.6
1,034,364	+		Sama_0847	0.89	-0.2
1,034,365	-		Sama_0847	0.89	+0.1
1,034,365	-		Sama_0847	0.89	+0.6
1,034,420	+				+0.0
1,034,421	-				-1.0
1,034,526	+				+0.8
1,034,605	+				+0.3
1,034,609	+				+0.3
1,034,644	+				-0.5
1,034,644	+				-0.4
1,034,645	-				-2.1
1,034,645	-				+0.0
1,034,801	+	anmK	Sama_0848	0.14	-1.4
1,034,801	+	anmK	Sama_0848	0.14	-1.6
1,034,810	+	anmK	Sama_0848	0.15	+1.9
1,034,853	-	anmK	Sama_0848	0.19	+1.0
1,034,853	-	anmK	Sama_0848	0.19	+0.5
1,034,874	+	anmK	Sama_0848	0.21	-0.1
1,034,874	+	anmK	Sama_0848	0.21	+0.0
1,034,874	+	anmK	Sama_0848	0.21	+0.3
1,034,875	-	anmK	Sama_0848	0.21	+0.2
1,034,875	-	anmK	Sama_0848	0.21	+0.3
1,034,875	-	anmK	Sama_0848	0.21	+0.1
1,034,875	-	anmK	Sama_0848	0.21	-0.3
1,034,934	+	anmK	Sama_0848	0.26	-1.4
1,034,935	-	anmK	Sama_0848	0.26	-0.2
1,035,043	+	anmK	Sama_0848	0.36	-1.7
1,035,043	+	anmK	Sama_0848	0.36	-0.1
1,035,053	+	anmK	Sama_0848	0.37	-0.1
1,035,053	+	anmK	Sama_0848	0.37	-0.3
1,035,054	-	anmK	Sama_0848	0.37	-0.4
1,035,058	+	anmK	Sama_0848	0.37	-1.4
1,035,059	-	anmK	Sama_0848	0.37	-0.4
1,035,059	-	anmK	Sama_0848	0.37	-1.0
1,035,089	+	anmK	Sama_0848	0.40	+0.7
1,035,089	+	anmK	Sama_0848	0.40	-1.4
1,035,090	-	anmK	Sama_0848	0.40	-0.7
1,035,090	-	anmK	Sama_0848	0.40	-0.0
1,035,102	-	anmK	Sama_0848	0.41	-0.7
1,035,147	+	anmK	Sama_0848	0.45	+0.9
1,035,148	-	anmK	Sama_0848	0.45	-0.2
1,035,156	+	anmK	Sama_0848	0.46	-0.8
1,035,156	+	anmK	Sama_0848	0.46	-0.5
1,035,157	-	anmK	Sama_0848	0.46	-0.7
1,035,168	+	anmK	Sama_0848	0.47	-0.9
1,035,168	+	anmK	Sama_0848	0.47	-0.4
1,035,168	+	anmK	Sama_0848	0.47	-0.4
1,035,168	+	anmK	Sama_0848	0.47	+0.1
1,035,168	+	anmK	Sama_0848	0.47	+0.6
1,035,168	+	anmK	Sama_0848	0.47	+0.6
1,035,169	-	anmK	Sama_0848	0.47	-0.9
1,035,204	+	anmK	Sama_0848	0.50	-0.1
1,035,205	-	anmK	Sama_0848	0.50	-0.5
1,035,236	+	anmK	Sama_0848	0.53	+0.6
1,035,237	-	anmK	Sama_0848	0.53	+0.0
1,035,245	+	anmK	Sama_0848	0.54	+0.4
1,035,252	+	anmK	Sama_0848	0.55	-0.8
1,035,252	+	anmK	Sama_0848	0.55	-1.2
1,035,252	+	anmK	Sama_0848	0.55	+0.6
1,035,252	+	anmK	Sama_0848	0.55	-1.2
1,035,253	-	anmK	Sama_0848	0.55	-0.6
1,035,253	-	anmK	Sama_0848	0.55	+1.1
1,035,253	-	anmK	Sama_0848	0.55	-0.5
1,035,253	-	anmK	Sama_0848	0.55	-3.4
1,035,284	+	anmK	Sama_0848	0.57	-0.3
1,035,345	-	anmK	Sama_0848	0.63	+0.2
1,035,345	-	anmK	Sama_0848	0.63	+0.1
1,035,378	-	anmK	Sama_0848	0.66	-0.4
1,035,378	-	anmK	Sama_0848	0.66	+1.1
1,035,453	-	anmK	Sama_0848	0.73	+0.9
1,035,494	+	anmK	Sama_0848	0.76	+1.6
1,035,494	+	anmK	Sama_0848	0.76	+0.2
1,035,494	+	anmK	Sama_0848	0.76	-0.3
1,035,494	+	anmK	Sama_0848	0.76	+0.2
1,035,494	+	anmK	Sama_0848	0.76	-0.6
1,035,494	+	anmK	Sama_0848	0.76	+0.6
1,035,494	+	anmK	Sama_0848	0.76	-1.0
1,035,494	+	anmK	Sama_0848	0.76	+0.6
1,035,494	+	anmK	Sama_0848	0.76	+0.2
1,035,494	+	anmK	Sama_0848	0.76	-0.3
1,035,495	-	anmK	Sama_0848	0.76	-0.6
1,035,495	-	anmK	Sama_0848	0.76	+0.2
1,035,495	-	anmK	Sama_0848	0.76	-0.9
1,035,495	-	anmK	Sama_0848	0.76	+0.9
1,035,495	-	anmK	Sama_0848	0.76	+0.5
1,035,495	-	anmK	Sama_0848	0.76	-0.3
1,035,495	-	anmK	Sama_0848	0.76	+0.0
1,035,495	-	anmK	Sama_0848	0.76	-0.3
1,035,495	-	anmK	Sama_0848	0.76	+0.6
1,035,495	-	anmK	Sama_0848	0.76	+0.5
1,035,495	-	anmK	Sama_0848	0.76	+0.7
1,035,495	-	anmK	Sama_0848	0.76	-1.9
1,035,495	-	anmK	Sama_0848	0.76	+2.9
1,035,498	+	anmK	Sama_0848	0.77	-0.0
1,035,498	+	anmK	Sama_0848	0.77	-1.7
1,035,498	+	anmK	Sama_0848	0.77	+0.2
1,035,498	+	anmK	Sama_0848	0.77	-0.2
1,035,498	+	anmK	Sama_0848	0.77	+1.2
1,035,499	-	anmK	Sama_0848	0.77	-0.1
1,035,499	-	anmK	Sama_0848	0.77	-0.4
1,035,499	-	anmK	Sama_0848	0.77	+0.4
1,035,499	-	anmK	Sama_0848	0.77	-1.0
1,035,499	-	anmK	Sama_0848	0.77	-0.8
1,035,604	-	anmK	Sama_0848	0.86	-0.5
1,035,713	+				+0.0
1,035,802	+				+0.8
1,035,803	-				-0.2
1,035,895	+		Sama_0849	0.10	-1.9
1,035,911	+		Sama_0849	0.11	-0.6
1,035,911	+		Sama_0849	0.11	-1.0
1,035,912	-		Sama_0849	0.12	-1.9
1,035,926	-		Sama_0849	0.13	-0.6
1,035,933	+		Sama_0849	0.13	+0.2
1,035,934	-		Sama_0849	0.13	-1.1
1,035,934	-		Sama_0849	0.13	-0.0
1,035,934	-		Sama_0849	0.13	-0.6
1,035,983	-		Sama_0849	0.17	-0.3
1,036,041	+		Sama_0849	0.21	-1.2
1,036,041	+		Sama_0849	0.21	-0.4
1,036,041	+		Sama_0849	0.21	+0.9
1,036,041	+		Sama_0849	0.21	-0.1
1,036,041	+		Sama_0849	0.21	+0.3
1,036,041	+		Sama_0849	0.21	-1.3
1,036,041	+		Sama_0849	0.21	-0.6
1,036,042	-		Sama_0849	0.21	-0.8
1,036,042	-		Sama_0849	0.21	-1.6
1,036,053	+		Sama_0849	0.22	-0.7
1,036,053	+		Sama_0849	0.22	+1.6
1,036,053	+		Sama_0849	0.22	+0.6
1,036,053	+		Sama_0849	0.22	-0.9
1,036,053	+		Sama_0849	0.22	-0.7
1,036,053	+		Sama_0849	0.22	-0.6
1,036,053	+		Sama_0849	0.22	-0.1
1,036,054	-		Sama_0849	0.22	-1.6
1,036,054	-		Sama_0849	0.22	+0.6
1,036,054	-		Sama_0849	0.22	-0.6
1,036,054	-		Sama_0849	0.22	-2.6
1,036,054	-		Sama_0849	0.22	-1.6
1,036,080	+		Sama_0849	0.24	-3.4
1,036,080	+		Sama_0849	0.24	+0.8
1,036,080	+		Sama_0849	0.24	-1.8
1,036,080	+		Sama_0849	0.24	+0.4
1,036,080	+		Sama_0849	0.24	-0.4
1,036,080	+		Sama_0849	0.24	-0.2
1,036,081	-		Sama_0849	0.24	-1.3
1,036,081	-		Sama_0849	0.24	-0.6
1,036,092	+		Sama_0849	0.24	-0.3
1,036,092	+		Sama_0849	0.24	-2.0
1,036,092	+		Sama_0849	0.24	-2.4
1,036,092	+		Sama_0849	0.24	-1.1
1,036,101	+		Sama_0849	0.25	-1.2
1,036,112	+		Sama_0849	0.26	-0.9
1,036,113	-		Sama_0849	0.26	-0.3
1,036,139	-		Sama_0849	0.28	-0.4
1,036,160	+		Sama_0849	0.29	+0.3
1,036,161	-		Sama_0849	0.29	+0.3
1,036,161	-		Sama_0849	0.29	+0.6
1,036,161	-		Sama_0849	0.29	-0.4
1,036,164	+		Sama_0849	0.30	-0.8
1,036,164	+		Sama_0849	0.30	-0.4
1,036,164	+		Sama_0849	0.30	-2.2
1,036,164	+		Sama_0849	0.30	+0.0
1,036,164	+		Sama_0849	0.30	-0.9
1,036,165	-		Sama_0849	0.30	+1.3
1,036,165	-		Sama_0849	0.30	-0.1
1,036,239	+		Sama_0849	0.35	-1.7
1,036,299	+		Sama_0849	0.39	-0.6
1,036,302	+		Sama_0849	0.40	+0.3
1,036,302	+		Sama_0849	0.40	+0.3
1,036,302	+		Sama_0849	0.40	-0.5
1,036,302	+		Sama_0849	0.40	-1.2
1,036,302	+		Sama_0849	0.40	-0.4
1,036,303	-		Sama_0849	0.40	-0.4
1,036,303	-		Sama_0849	0.40	-1.2
1,036,306	+		Sama_0849	0.40	-1.4
1,036,306	+		Sama_0849	0.40	-0.2
1,036,306	+		Sama_0849	0.40	-2.6
1,036,317	+		Sama_0849	0.41	-1.7
1,036,333	-		Sama_0849	0.42	-3.1
1,036,333	-		Sama_0849	0.42	-1.4
1,036,352	-		Sama_0849	0.43	-1.9
1,036,401	+		Sama_0849	0.47	-2.0
1,036,401	+		Sama_0849	0.47	-1.4
1,036,402	-		Sama_0849	0.47	+0.3
1,036,402	-		Sama_0849	0.47	-0.5
1,036,429	+		Sama_0849	0.49	-0.7
1,036,429	+		Sama_0849	0.49	+0.2
1,036,430	-		Sama_0849	0.49	-1.4
1,036,507	+		Sama_0849	0.54	-0.7
1,036,507	+		Sama_0849	0.54	+0.0
1,036,507	+		Sama_0849	0.54	-1.1
1,036,589	+		Sama_0849	0.60	-0.4
1,036,590	-		Sama_0849	0.60	-1.2
1,036,590	-		Sama_0849	0.60	+0.0
1,036,590	-		Sama_0849	0.60	+0.8