Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0806 and Sama_0807 are separated by 49 nucleotides Sama_0807 and Sama_0808 are separated by 132 nucleotides Sama_0808 and Sama_0809 are separated by 284 nucleotides
Sama_0806: Sama_0806 - hypothetical protein (RefSeq), at 990,255 to 990,905
_0806
Sama_0807: Sama_0807 - alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq), at 990,955 to 991,638
_0807
Sama_0808: Sama_0808 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 991,771 to 993,069
_0808
Sama_0809: Sama_0809 - putative diguanylate phosphodiesterase (RefSeq), at 993,354 to 994,589
_0809
Position (kb) 991
992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 990.874 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.896 kb on + strand at 990.896 kb on + strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.924 kb on - strand at 990.945 kb on + strand at 990.946 kb on - strand at 990.957 kb on - strand at 990.957 kb on - strand at 990.994 kb on - strand at 991.034 kb on + strand, within Sama_0807 at 991.034 kb on + strand, within Sama_0807 at 991.035 kb on - strand, within Sama_0807 at 991.048 kb on - strand, within Sama_0807 at 991.059 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.154 kb on + strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.249 kb on - strand, within Sama_0807 at 991.249 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.344 kb on + strand, within Sama_0807 at 991.344 kb on + strand, within Sama_0807 at 991.422 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.511 kb on - strand, within Sama_0807 at 991.551 kb on + strand, within Sama_0807 at 991.552 kb on - strand, within Sama_0807 at 991.590 kb on + strand at 991.590 kb on + strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.599 kb on + strand at 991.599 kb on + strand at 991.599 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.604 kb on - strand at 991.604 kb on - strand at 991.638 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.733 kb on - strand at 991.745 kb on + strand at 991.746 kb on - strand at 991.746 kb on - strand at 991.746 kb on - strand at 991.765 kb on - strand at 991.765 kb on - strand at 991.765 kb on - strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 992.087 kb on + strand, within Sama_0808 at 992.088 kb on - strand, within Sama_0808 at 992.126 kb on + strand, within Sama_0808 at 992.422 kb on - strand, within Sama_0808 at 992.453 kb on - strand, within Sama_0808 at 992.691 kb on + strand, within Sama_0808 at 992.791 kb on - strand, within Sama_0808 at 993.085 kb on - strand at 993.112 kb on + strand at 993.136 kb on - strand at 993.159 kb on - strand at 993.162 kb on + strand at 993.163 kb on - strand at 993.163 kb on - strand at 993.163 kb on - strand at 993.163 kb on - strand at 993.164 kb on + strand at 993.165 kb on - strand at 993.200 kb on - strand at 993.234 kb on + strand at 993.234 kb on + strand at 993.235 kb on - strand at 993.235 kb on - strand at 993.235 kb on - strand at 993.269 kb on - strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.351 kb on - strand at 993.351 kb on - strand at 993.351 kb on - strand at 993.353 kb on + strand at 993.353 kb on + strand at 993.353 kb on + strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.393 kb on + strand at 993.406 kb on + strand at 993.447 kb on + strand at 993.447 kb on + strand at 993.447 kb on + strand at 993.448 kb on - strand at 993.501 kb on + strand, within Sama_0809 at 993.502 kb on - strand, within Sama_0809 at 993.502 kb on - strand, within Sama_0809 at 993.502 kb on - strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.528 kb on - strand, within Sama_0809 at 993.528 kb on - strand, within Sama_0809 at 993.556 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.692 kb on - strand, within Sama_0809 at 993.695 kb on + strand, within Sama_0809 at 993.695 kb on + strand, within Sama_0809 at 993.696 kb on - strand, within Sama_0809 at 993.696 kb on - strand, within Sama_0809 at 993.696 kb on - strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.719 kb on - strand, within Sama_0809 at 993.719 kb on - strand, within Sama_0809 at 993.719 kb on - strand, within Sama_0809 at 993.775 kb on + strand, within Sama_0809 at 993.775 kb on + strand, within Sama_0809 at 993.775 kb on + strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.797 kb on + strand, within Sama_0809 at 993.798 kb on - strand, within Sama_0809 at 993.798 kb on - strand, within Sama_0809 at 993.798 kb on - strand, within Sama_0809 at 993.806 kb on + strand, within Sama_0809 at 993.806 kb on + strand, within Sama_0809 at 993.807 kb on - strand, within Sama_0809 at 993.807 kb on - strand, within Sama_0809 at 993.819 kb on + strand, within Sama_0809 at 993.820 kb on - strand, within Sama_0809 at 993.823 kb on - strand, within Sama_0809 at 993.926 kb on + strand, within Sama_0809 at 993.926 kb on + strand, within Sama_0809 at 993.946 kb on - strand, within Sama_0809 at 994.046 kb on + strand, within Sama_0809 at 994.046 kb on + strand, within Sama_0809 at 994.046 kb on + strand, within Sama_0809 at 994.047 kb on - strand, within Sama_0809
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 990,874 + +0.1 990,890 + -1.1 990,890 + -0.1 990,890 + -0.4 990,890 + +0.5 990,890 + +0.1 990,890 + +0.1 990,890 + -0.1 990,890 + +0.0 990,891 - -1.4 990,891 - -0.3 990,891 - -0.6 990,891 - +0.1 990,891 - -0.3 990,891 - -0.1 990,891 - +0.4 990,891 - +0.5 990,891 - -0.4 990,891 - -1.0 990,891 - +0.6 990,896 + +1.8 990,896 + +0.6 990,897 - -1.3 990,897 - -0.2 990,897 - -1.3 990,919 - +1.2 990,919 - -0.1 990,919 - +0.6 990,924 - +0.4 990,945 + -0.2 990,946 - -0.7 990,957 - -0.4 990,957 - -1.4 990,994 - -0.4 991,034 + Sama_0807 0.12 -0.4 991,034 + Sama_0807 0.12 -0.4 991,035 - Sama_0807 0.12 -1.2 991,048 - Sama_0807 0.14 -1.4 991,059 + Sama_0807 0.15 +0.3 991,070 + Sama_0807 0.17 -0.8 991,070 + Sama_0807 0.17 -0.1 991,070 + Sama_0807 0.17 +0.2 991,070 + Sama_0807 0.17 -0.4 991,070 + Sama_0807 0.17 +0.0 991,070 + Sama_0807 0.17 +0.6 991,071 - Sama_0807 0.17 +0.1 991,071 - Sama_0807 0.17 +0.0 991,071 - Sama_0807 0.17 -0.0 991,071 - Sama_0807 0.17 +0.8 991,071 - Sama_0807 0.17 +0.3 991,154 + Sama_0807 0.29 +0.4 991,155 - Sama_0807 0.29 +0.5 991,155 - Sama_0807 0.29 -1.6 991,239 - Sama_0807 0.42 -0.6 991,239 - Sama_0807 0.42 -1.2 991,239 - Sama_0807 0.42 +1.3 991,248 + Sama_0807 0.43 +0.3 991,248 + Sama_0807 0.43 +0.3 991,248 + Sama_0807 0.43 +1.0 991,248 + Sama_0807 0.43 -2.7 991,248 + Sama_0807 0.43 -0.2 991,248 + Sama_0807 0.43 +0.1 991,249 - Sama_0807 0.43 -1.5 991,249 - Sama_0807 0.43 +0.1 991,295 - Sama_0807 0.50 +1.4 991,295 - Sama_0807 0.50 -0.4 991,295 - Sama_0807 0.50 +1.0 991,295 - Sama_0807 0.50 +0.3 991,344 + Sama_0807 0.57 -0.3 991,344 + Sama_0807 0.57 +0.7 991,422 + Sama_0807 0.68 +1.6 991,510 + Sama_0807 0.81 +0.2 991,510 + Sama_0807 0.81 +0.9 991,510 + Sama_0807 0.81 -0.1 991,511 - Sama_0807 0.81 +1.2 991,551 + Sama_0807 0.87 +0.8 991,552 - Sama_0807 0.87 -0.7 991,590 + -0.7 991,590 + +1.0 991,591 - +0.7 991,591 - -0.2 991,591 - -1.4 991,591 - -0.6 991,591 - +0.4 991,599 + +1.0 991,599 + -1.2 991,599 + +0.0 991,603 + -1.1 991,603 + +1.1 991,603 + +1.3 991,603 + -0.1 991,603 + -1.5 991,603 + +1.8 991,604 - -0.6 991,604 - -0.5 991,638 + -1.3 991,656 + +0.2 991,656 + +0.5 991,656 + -0.4 991,656 + -1.7 991,656 + +0.5 991,656 + +0.8 991,656 + +0.8 991,657 - +1.3 991,657 - +1.0 991,657 - +0.8 991,657 - +0.5 991,657 - +0.1 991,657 - -0.7 991,662 + -0.6 991,662 + -1.8 991,662 + -0.2 991,662 + +0.2 991,662 + -0.3 991,662 + +0.9 991,662 + +0.4 991,663 - +1.3 991,663 - -0.0 991,663 - -0.9 991,663 - +0.0 991,663 - -0.2 991,663 - -0.4 991,663 - -0.3 991,663 - +0.6 991,733 - -0.1 991,745 + +0.5 991,746 - +1.0 991,746 - +0.2 991,746 - +1.9 991,765 - -1.1 991,765 - +0.3 991,765 - +0.0 991,772 + +0.8 991,772 + -0.4 991,772 + -0.7 991,772 + +0.8 991,772 + -3.1 991,772 + -0.5 991,772 + +1.1 991,773 - +0.0 991,773 - +0.2 991,773 - -0.9 991,773 - +0.0 991,773 - +0.3 991,773 - -0.4 992,087 + Sama_0808 0.24 +0.2 992,088 - Sama_0808 0.24 -1.5 992,126 + Sama_0808 0.27 -1.2 992,422 - Sama_0808 0.50 +3.3 992,453 - Sama_0808 0.53 -1.4 992,691 + Sama_0808 0.71 -1.7 992,791 - Sama_0808 0.79 -0.4 993,085 - -1.2 993,112 + +0.6 993,136 - +0.8 993,159 - +0.3 993,162 + -1.7 993,163 - +0.2 993,163 - +0.1 993,163 - -0.5 993,163 - -0.2 993,164 + +0.9 993,165 - -0.8 993,200 - +0.7 993,234 + -0.8 993,234 + -0.5 993,235 - +1.1 993,235 - +0.4 993,235 - -1.5 993,269 - +0.2 993,350 + -0.3 993,350 + -0.0 993,350 + +1.6 993,350 + +0.4 993,350 + +0.0 993,351 - -0.7 993,351 - -1.3 993,351 - +0.6 993,353 + +0.0 993,353 + +0.4 993,353 + +0.2 993,354 - +0.1 993,354 - -0.1 993,354 - +0.6 993,354 - -0.5 993,354 - -0.5 993,393 + +0.2 993,406 + +0.6 993,447 + +0.6 993,447 + -0.2 993,447 + +0.6 993,448 - +0.1 993,501 + Sama_0809 0.12 -0.1 993,502 - Sama_0809 0.12 -0.6 993,502 - Sama_0809 0.12 +0.9 993,502 - Sama_0809 0.12 +0.7 993,523 + Sama_0809 0.14 -0.7 993,523 + Sama_0809 0.14 -1.0 993,523 + Sama_0809 0.14 -1.5 993,523 + Sama_0809 0.14 +1.3 993,523 + Sama_0809 0.14 +0.1 993,523 + Sama_0809 0.14 +0.1 993,523 + Sama_0809 0.14 +0.3 993,523 + Sama_0809 0.14 -0.2 993,523 + Sama_0809 0.14 +0.4 993,523 + Sama_0809 0.14 -2.2 993,523 + Sama_0809 0.14 +0.3 993,523 + Sama_0809 0.14 +0.6 993,524 - Sama_0809 0.14 -1.0 993,524 - Sama_0809 0.14 +1.5 993,524 - Sama_0809 0.14 +0.9 993,524 - Sama_0809 0.14 -1.0 993,527 + Sama_0809 0.14 -0.6 993,527 + Sama_0809 0.14 -0.2 993,527 + Sama_0809 0.14 +0.6 993,527 + Sama_0809 0.14 +1.0 993,527 + Sama_0809 0.14 -1.0 993,527 + Sama_0809 0.14 -0.4 993,528 - Sama_0809 0.14 -0.1 993,528 - Sama_0809 0.14 -0.1 993,556 + Sama_0809 0.16 +1.0 993,625 + Sama_0809 0.22 -0.4 993,625 + Sama_0809 0.22 +0.6 993,625 + Sama_0809 0.22 -0.6 993,625 + Sama_0809 0.22 -2.7 993,625 + Sama_0809 0.22 -0.2 993,625 + Sama_0809 0.22 -0.3 993,625 + Sama_0809 0.22 -0.0 993,625 + Sama_0809 0.22 +0.3 993,626 - Sama_0809 0.22 +0.6 993,626 - Sama_0809 0.22 -0.0 993,626 - Sama_0809 0.22 +1.4 993,626 - Sama_0809 0.22 -0.3 993,626 - Sama_0809 0.22 -1.0 993,692 - Sama_0809 0.27 +1.0 993,695 + Sama_0809 0.28 -0.0 993,695 + Sama_0809 0.28 -1.0 993,696 - Sama_0809 0.28 +0.8 993,696 - Sama_0809 0.28 +0.3 993,696 - Sama_0809 0.28 -1.0 993,718 + Sama_0809 0.29 -1.2 993,718 + Sama_0809 0.29 +0.6 993,718 + Sama_0809 0.29 +0.0 993,718 + Sama_0809 0.29 -0.4 993,718 + Sama_0809 0.29 +0.1 993,718 + Sama_0809 0.29 -1.1 993,718 + Sama_0809 0.29 +0.4 993,719 - Sama_0809 0.30 -0.2 993,719 - Sama_0809 0.30 +0.4 993,719 - Sama_0809 0.30 -0.7 993,775 + Sama_0809 0.34 +0.2 993,775 + Sama_0809 0.34 +0.8 993,775 + Sama_0809 0.34 -0.1 993,776 - Sama_0809 0.34 -2.2 993,776 - Sama_0809 0.34 +0.6 993,776 - Sama_0809 0.34 +0.2 993,776 - Sama_0809 0.34 +0.2 993,797 + Sama_0809 0.36 -1.2 993,798 - Sama_0809 0.36 -0.1 993,798 - Sama_0809 0.36 +1.0 993,798 - Sama_0809 0.36 -0.5 993,806 + Sama_0809 0.37 +0.0 993,806 + Sama_0809 0.37 -0.2 993,807 - Sama_0809 0.37 -0.4 993,807 - Sama_0809 0.37 -0.3 993,819 + Sama_0809 0.38 +0.2 993,820 - Sama_0809 0.38 +1.2 993,823 - Sama_0809 0.38 +0.0 993,926 + Sama_0809 0.46 +0.0 993,926 + Sama_0809 0.46 +0.9 993,946 - Sama_0809 0.48 -0.7 994,046 + Sama_0809 0.56 -0.1 994,046 + Sama_0809 0.56 +0.1 994,046 + Sama_0809 0.56 +1.1 994,047 - Sama_0809 0.56 -1.4
Or see this region's nucleotide sequence