Strain Fitness in Shewanella amazonensis SB2B around Sama_0778

Experiment: Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpanB and Sama_0777 are separated by 13 nucleotidesSama_0777 and Sama_0778 are separated by 2 nucleotidesSama_0778 and Sama_0779 are separated by 260 nucleotides Sama_0776: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 958,810 to 959,649 panB Sama_0777: Sama_0777 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase (RefSeq), at 959,663 to 960,151 _0777 Sama_0778: Sama_0778 - tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq), at 960,154 to 961,428 _0778 Sama_0779: Sama_0779 - glutamyl-tRNA synthetase domain-containing protein (RefSeq), at 961,689 to 962,561 _0779 Position (kb) 960 961 962Strain fitness (log2 ratio) -2 -1 0 1 2 3at 959.641 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 960.139 kb on - strandat 960.139 kb on - strandat 960.139 kb on - strandat 960.139 kb on - strandat 960.152 kb on - strandat 960.305 kb on - strand, within Sama_0778at 960.353 kb on - strand, within Sama_0778at 960.466 kb on - strand, within Sama_0778at 960.549 kb on - strand, within Sama_0778at 960.549 kb on - strand, within Sama_0778at 960.558 kb on - strand, within Sama_0778at 960.843 kb on - strand, within Sama_0778at 960.843 kb on - strand, within Sama_0778at 960.843 kb on - strand, within Sama_0778at 960.904 kb on + strand, within Sama_0778at 960.905 kb on - strand, within Sama_0778at 960.905 kb on - strand, within Sama_0778at 961.009 kb on + strand, within Sama_0778at 961.009 kb on + strand, within Sama_0778at 961.010 kb on - strand, within Sama_0778at 961.010 kb on - strand, within Sama_0778at 961.010 kb on - strand, within Sama_0778at 961.074 kb on - strand, within Sama_0778at 961.074 kb on - strand, within Sama_0778at 961.074 kb on - strand, within Sama_0778at 961.077 kb on - strand, within Sama_0778at 961.077 kb on - strand, within Sama_0778at 961.131 kb on - strand, within Sama_0778at 961.220 kb on - strand, within Sama_0778at 961.243 kb on + strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.244 kb on - strand, within Sama_0778at 961.422 kb on - strandat 961.591 kb on - strandat 961.606 kb on - strandat 961.606 kb on - strandat 961.606 kb on - strandat 961.621 kb on - strandat 961.621 kb on - strandat 961.621 kb on - strandat 961.624 kb on + strandat 961.624 kb on + strandat 961.624 kb on + strandat 961.624 kb on + strandat 961.625 kb on - strandat 961.632 kb on - strandat 961.646 kb on + strandat 961.647 kb on - strandat 961.667 kb on + strandat 961.667 kb on + strandat 961.690 kb on + strandat 962.054 kb on - strand, within Sama_0779at 962.059 kb on + strand, within Sama_0779at 962.084 kb on + strand, within Sama_0779at 962.085 kb on - strand, within Sama_0779at 962.119 kb on - strand, within Sama_0779at 962.165 kb on + strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.218 kb on + strand, within Sama_0779at 962.218 kb on + strand, within Sama_0779at 962.218 kb on + strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.421 kb on + strand, within Sama_0779at 962.422 kb on - strand, within Sama_0779

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml
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959,641 - -1.5
959,643 - -0.4
959,643 - -0.6
959,643 - -0.8
959,643 - -0.1
959,643 - -0.4
960,139 - +0.7
960,139 - +0.3
960,139 - +0.5
960,139 - -0.1
960,152 - +0.2
960,305 - Sama_0778 0.12 -1.0
960,353 - Sama_0778 0.16 -1.4
960,466 - Sama_0778 0.24 -1.4
960,549 - Sama_0778 0.31 -0.4
960,549 - Sama_0778 0.31 +0.6
960,558 - Sama_0778 0.32 -0.5
960,843 - Sama_0778 0.54 -2.0
960,843 - Sama_0778 0.54 -2.4
960,843 - Sama_0778 0.54 -1.2
960,904 + Sama_0778 0.59 -0.9
960,905 - Sama_0778 0.59 -1.5
960,905 - Sama_0778 0.59 -2.1
961,009 + Sama_0778 0.67 +2.4
961,009 + Sama_0778 0.67 +0.5
961,010 - Sama_0778 0.67 -0.9
961,010 - Sama_0778 0.67 -0.8
961,010 - Sama_0778 0.67 -2.5
961,074 - Sama_0778 0.72 -0.4
961,074 - Sama_0778 0.72 -2.4
961,074 - Sama_0778 0.72 -2.3
961,077 - Sama_0778 0.72 -0.8
961,077 - Sama_0778 0.72 -1.8
961,131 - Sama_0778 0.77 +0.1
961,220 - Sama_0778 0.84 -1.5
961,243 + Sama_0778 0.85 -1.7
961,244 - Sama_0778 0.85 -1.2
961,244 - Sama_0778 0.85 -1.4
961,244 - Sama_0778 0.85 -0.7
961,244 - Sama_0778 0.85 -1.4
961,244 - Sama_0778 0.85 -0.6
961,244 - Sama_0778 0.85 -0.0
961,244 - Sama_0778 0.85 -1.4
961,422 - +0.1
961,591 - +0.5
961,606 - -0.2
961,606 - +0.4
961,606 - -0.4
961,621 - +0.1
961,621 - +0.5
961,621 - -0.4
961,624 + -0.4
961,624 + -2.1
961,624 + -0.2
961,624 + +0.6
961,625 - +0.3
961,632 - -1.2
961,646 + +0.0
961,647 - -0.8
961,667 + -0.8
961,667 + +0.2
961,690 + -0.4
962,054 - Sama_0779 0.42 -2.3
962,059 + Sama_0779 0.42 +0.0
962,084 + Sama_0779 0.45 +1.5
962,085 - Sama_0779 0.45 -1.7
962,119 - Sama_0779 0.49 -1.4
962,165 + Sama_0779 0.55 +3.2
962,172 - Sama_0779 0.55 -0.9
962,172 - Sama_0779 0.55 +0.6
962,172 - Sama_0779 0.55 +0.1
962,172 - Sama_0779 0.55 +0.4
962,172 - Sama_0779 0.55 -1.4
962,172 - Sama_0779 0.55 +0.3
962,172 - Sama_0779 0.55 +0.4
962,175 + Sama_0779 0.56 -0.9
962,175 + Sama_0779 0.56 -0.4
962,175 + Sama_0779 0.56 -0.6
962,175 + Sama_0779 0.56 +0.6
962,175 + Sama_0779 0.56 -1.4
962,175 + Sama_0779 0.56 -0.3
962,175 + Sama_0779 0.56 -0.8
962,176 - Sama_0779 0.56 -1.1
962,176 - Sama_0779 0.56 +0.3
962,176 - Sama_0779 0.56 -0.1
962,176 - Sama_0779 0.56 -0.2
962,176 - Sama_0779 0.56 +0.2
962,218 + Sama_0779 0.61 -0.6
962,218 + Sama_0779 0.61 +0.9
962,218 + Sama_0779 0.61 +0.6
962,219 - Sama_0779 0.61 +0.9
962,219 - Sama_0779 0.61 +0.4
962,219 - Sama_0779 0.61 -0.3
962,219 - Sama_0779 0.61 -0.1
962,219 - Sama_0779 0.61 +0.2
962,229 + Sama_0779 0.62 +0.3
962,229 + Sama_0779 0.62 +0.6
962,229 + Sama_0779 0.62 +0.0
962,229 + Sama_0779 0.62 -0.8
962,229 + Sama_0779 0.62 +0.4
962,229 + Sama_0779 0.62 -1.3
962,230 - Sama_0779 0.62 -0.2
962,230 - Sama_0779 0.62 -0.2
962,230 - Sama_0779 0.62 -0.9
962,230 - Sama_0779 0.62 -0.4
962,230 - Sama_0779 0.62 +1.0
962,230 - Sama_0779 0.62 +1.0
962,230 - Sama_0779 0.62 +0.8
962,230 - Sama_0779 0.62 +0.1
962,308 + Sama_0779 0.71 +0.1
962,308 + Sama_0779 0.71 +0.3
962,308 + Sama_0779 0.71 +0.7
962,308 + Sama_0779 0.71 +0.1
962,308 + Sama_0779 0.71 -0.6
962,332 + Sama_0779 0.74 +1.2
962,332 + Sama_0779 0.74 +0.6
962,332 + Sama_0779 0.74 +0.2
962,332 + Sama_0779 0.74 +0.4
962,332 + Sama_0779 0.74 -0.3
962,332 + Sama_0779 0.74 -0.6
962,333 - Sama_0779 0.74 +0.0
962,333 - Sama_0779 0.74 -1.0
962,333 - Sama_0779 0.74 +0.9
962,333 - Sama_0779 0.74 -2.2
962,333 - Sama_0779 0.74 +0.4
962,333 - Sama_0779 0.74 +1.5
962,333 - Sama_0779 0.74 +0.3
962,421 + Sama_0779 0.84 +1.3
962,422 - Sama_0779 0.84 +0.5

Or see this region's nucleotide sequence