Strain Fitness in Shewanella amazonensis SB2B around Sama_0754

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
930,630	+		Sama_0753	0.60	-2.6
930,723	+		Sama_0753	0.65	+0.5
930,724	-		Sama_0753	0.65	-0.7
930,800	+		Sama_0753	0.70	+0.0
930,800	+		Sama_0753	0.70	-2.2
930,800	+		Sama_0753	0.70	+0.2
930,801	-		Sama_0753	0.70	-0.4
930,804	+		Sama_0753	0.70	-0.6
930,804	+		Sama_0753	0.70	+0.9
930,821	+		Sama_0753	0.71	-0.3
930,821	+		Sama_0753	0.71	-0.1
930,821	+		Sama_0753	0.71	-0.6
930,821	+		Sama_0753	0.71	-2.3
930,822	-		Sama_0753	0.71	+0.1
930,822	-		Sama_0753	0.71	+0.1
930,822	-		Sama_0753	0.71	+0.2
930,822	-		Sama_0753	0.71	-1.3
930,854	+		Sama_0753	0.73	+0.3
930,864	+		Sama_0753	0.73	+2.2
930,865	-		Sama_0753	0.73	-0.7
930,865	-		Sama_0753	0.73	-1.7
930,890	+		Sama_0753	0.75	-0.2
930,890	+		Sama_0753	0.75	+0.4
930,890	+		Sama_0753	0.75	+1.1
930,891	-		Sama_0753	0.75	+0.7
930,900	+		Sama_0753	0.75	+1.8
930,901	-		Sama_0753	0.76	+0.8
930,944	+		Sama_0753	0.78	-2.3
930,944	+		Sama_0753	0.78	+0.5
930,944	+		Sama_0753	0.78	-0.3
930,944	+		Sama_0753	0.78	+0.0
930,945	-		Sama_0753	0.78	+1.2
930,948	+		Sama_0753	0.78	-0.3
930,948	+		Sama_0753	0.78	-0.4
930,948	+		Sama_0753	0.78	-0.2
930,948	+		Sama_0753	0.78	-0.5
930,948	+		Sama_0753	0.78	+1.1
930,948	+		Sama_0753	0.78	+0.5
930,948	+		Sama_0753	0.78	+1.2
930,948	+		Sama_0753	0.78	+0.7
930,948	+		Sama_0753	0.78	-1.0
930,948	+		Sama_0753	0.78	+0.7
930,948	+		Sama_0753	0.78	+1.0
930,949	-		Sama_0753	0.78	+0.5
930,949	-		Sama_0753	0.78	-0.3
930,949	-		Sama_0753	0.78	-0.2
930,949	-		Sama_0753	0.78	+0.3
930,958	+		Sama_0753	0.79	+0.1
930,958	+		Sama_0753	0.79	+0.2
931,001	+		Sama_0753	0.81	-0.1
931,001	+		Sama_0753	0.81	+0.9
931,001	+		Sama_0753	0.81	-0.2
931,002	-		Sama_0753	0.81	+0.2
931,002	-		Sama_0753	0.81	-1.3
931,002	-		Sama_0753	0.81	-0.2
931,002	-		Sama_0753	0.81	-1.0
931,002	-		Sama_0753	0.81	+0.7
931,002	-		Sama_0753	0.81	-0.4
931,002	-		Sama_0753	0.81	+0.0
931,002	-		Sama_0753	0.81	-0.1
931,004	+		Sama_0753	0.81	+1.7
931,004	+		Sama_0753	0.81	+0.4
931,004	+		Sama_0753	0.81	-1.3
931,004	+		Sama_0753	0.81	-0.4
931,004	+		Sama_0753	0.81	+0.4
931,004	+		Sama_0753	0.81	-0.1
931,004	+		Sama_0753	0.81	+0.3
931,005	-		Sama_0753	0.82	-1.1
931,005	-		Sama_0753	0.82	+0.7
931,005	-		Sama_0753	0.82	+0.7
931,066	+		Sama_0753	0.85	+0.3
931,066	+		Sama_0753	0.85	+1.9
931,067	-		Sama_0753	0.85	-0.9
931,108	+		Sama_0753	0.88	+0.7
931,108	+		Sama_0753	0.88	+1.1
931,109	-		Sama_0753	0.88	+0.1
931,109	-		Sama_0753	0.88	-0.2
931,126	+		Sama_0753	0.89	-0.6
931,126	+		Sama_0753	0.89	-0.5
931,177	-				+1.1
931,187	+				+1.8
931,187	+				+0.4
931,187	+				+0.3
931,205	-				-0.4
931,205	-				+1.2
931,243	+				-0.6
931,244	-				+0.1
931,264	+				+0.3
931,264	+				-0.0
931,264	+				+1.0
931,265	-				-0.3
931,265	-				-0.2
931,267	+				+0.7
931,267	+				-0.1
931,268	-				-0.1
931,299	-				-0.7
931,331	+				-1.3
931,332	-				-0.3
931,334	+				-2.5
931,334	+				+1.5
931,335	-				+1.4
931,335	-				-2.3
931,351	+				+0.3
931,358	+				-0.2
931,366	+				-0.8
931,367	-				+1.3
931,374	+				+0.7
931,374	+				-1.9
931,374	+				-0.5
931,374	+				-0.0
931,374	+				+0.5
931,375	-				-1.0
931,375	-				+0.2
931,375	-				-3.2
931,386	+				-0.2
931,386	+				+0.9
931,387	-				+0.1
931,399	+				+0.6
931,413	-				+0.5
931,506	-				+0.3
931,557	-				-0.1
931,685	-				+0.9
931,782	+				-0.8
931,783	-				-1.3
931,796	+		Sama_0754	0.11	-0.9
931,797	-		Sama_0754	0.11	-0.3
931,817	+		Sama_0754	0.12	+0.1
931,817	+		Sama_0754	0.12	-0.3
931,818	-		Sama_0754	0.12	-0.2
931,852	+		Sama_0754	0.14	+0.1
931,853	-		Sama_0754	0.14	-1.0
931,889	+		Sama_0754	0.16	+0.1
931,889	+		Sama_0754	0.16	-1.1
931,889	+		Sama_0754	0.16	-0.9
931,889	+		Sama_0754	0.16	-0.1
931,889	+		Sama_0754	0.16	-0.7
931,889	+		Sama_0754	0.16	-1.7
931,889	+		Sama_0754	0.16	-0.5
931,889	+		Sama_0754	0.16	-0.7
931,889	+		Sama_0754	0.16	-1.0
931,889	+		Sama_0754	0.16	+0.1
931,890	-		Sama_0754	0.16	-0.7
931,890	-		Sama_0754	0.16	-0.9
931,890	-		Sama_0754	0.16	-0.8
931,890	-		Sama_0754	0.16	-0.5
931,890	-		Sama_0754	0.16	-0.6
931,890	-		Sama_0754	0.16	+0.5
931,890	-		Sama_0754	0.16	-1.5
931,890	-		Sama_0754	0.16	-0.5
931,890	-		Sama_0754	0.16	-1.3
931,890	-		Sama_0754	0.16	-0.2
931,890	-		Sama_0754	0.16	-0.5
932,026	-		Sama_0754	0.24	+0.1
932,026	-		Sama_0754	0.24	-1.4
932,094	+		Sama_0754	0.28	+0.2
932,173	+		Sama_0754	0.32	-1.3
932,173	+		Sama_0754	0.32	-0.5
932,174	-		Sama_0754	0.32	-0.2
932,174	-		Sama_0754	0.32	-0.9
932,174	-		Sama_0754	0.32	+1.0
932,174	-		Sama_0754	0.32	-1.2
932,174	-		Sama_0754	0.32	+0.1
932,207	+		Sama_0754	0.34	-0.3
932,207	+		Sama_0754	0.34	+0.8
932,207	+		Sama_0754	0.34	-0.6
932,207	+		Sama_0754	0.34	-1.5
932,207	+		Sama_0754	0.34	-0.8
932,207	+		Sama_0754	0.34	-2.5
932,207	+		Sama_0754	0.34	-0.1
932,207	+		Sama_0754	0.34	-1.7
932,208	-		Sama_0754	0.34	+1.3
932,208	-		Sama_0754	0.34	+0.1
932,208	-		Sama_0754	0.34	+0.1
932,208	-		Sama_0754	0.34	-0.3
932,208	-		Sama_0754	0.34	-0.5
932,272	-		Sama_0754	0.38	+0.2
932,321	+		Sama_0754	0.41	+0.3
932,321	+		Sama_0754	0.41	-0.4
932,321	+		Sama_0754	0.41	+0.5
932,321	+		Sama_0754	0.41	-0.7
932,321	+		Sama_0754	0.41	-2.5
932,321	+		Sama_0754	0.41	-1.2
932,321	+		Sama_0754	0.41	-0.6
932,322	-		Sama_0754	0.41	-0.8
932,322	-		Sama_0754	0.41	+0.2
932,322	-		Sama_0754	0.41	+0.5
932,322	-		Sama_0754	0.41	-0.5
932,322	-		Sama_0754	0.41	-1.3
932,322	-		Sama_0754	0.41	-0.1
932,322	-		Sama_0754	0.41	-1.7
932,322	-		Sama_0754	0.41	-1.2
932,330	-		Sama_0754	0.42	-0.3
932,356	-		Sama_0754	0.43	-0.6
932,476	-		Sama_0754	0.50	-0.1
932,553	+		Sama_0754	0.54	+0.7
932,625	-		Sama_0754	0.59	+0.1
932,625	-		Sama_0754	0.59	-1.2
932,628	+		Sama_0754	0.59	-0.1
932,629	-		Sama_0754	0.59	-0.3
932,634	+		Sama_0754	0.59	-0.8
932,640	+		Sama_0754	0.60	-0.2
932,665	+		Sama_0754	0.61	-1.9
932,666	-		Sama_0754	0.61	-0.2
932,692	+		Sama_0754	0.63	+0.0
932,692	+		Sama_0754	0.63	-1.2
932,692	+		Sama_0754	0.63	-0.9
932,692	+		Sama_0754	0.63	-0.1
932,693	-		Sama_0754	0.63	+0.3
932,693	-		Sama_0754	0.63	+0.2
932,695	-		Sama_0754	0.63	+0.3
932,695	-		Sama_0754	0.63	-0.2
932,708	-		Sama_0754	0.63	-0.5
932,721	+		Sama_0754	0.64	-0.0
932,721	+		Sama_0754	0.64	-0.1
932,722	-		Sama_0754	0.64	+0.4
932,740	+		Sama_0754	0.65	-0.6
932,740	+		Sama_0754	0.65	+0.3
932,741	-		Sama_0754	0.65	-1.9
932,741	-		Sama_0754	0.65	-2.9
932,869	+		Sama_0754	0.73	-0.7
932,870	-		Sama_0754	0.73	-2.4
932,870	-		Sama_0754	0.73	+0.2
932,870	-		Sama_0754	0.73	-0.3
932,922	+		Sama_0754	0.76	-0.9
932,950	-		Sama_0754	0.78	-0.8
932,967	+		Sama_0754	0.79	-0.7
932,968	-		Sama_0754	0.79	-0.0
932,968	-		Sama_0754	0.79	-0.2
932,969	+		Sama_0754	0.79	-1.8
932,970	-		Sama_0754	0.79	-1.9
932,970	-		Sama_0754	0.79	-0.5
932,970	-		Sama_0754	0.79	-1.3
932,970	-		Sama_0754	0.79	-0.3
932,970	-		Sama_0754	0.79	-0.9
932,983	+		Sama_0754	0.79	-1.2
932,983	+		Sama_0754	0.79	-0.1
932,983	+		Sama_0754	0.79	-1.0
932,984	-		Sama_0754	0.80	-0.1
932,984	-		Sama_0754	0.80	+0.7
932,984	-		Sama_0754	0.80	+0.1
932,988	-		Sama_0754	0.80	-1.3
933,015	+		Sama_0754	0.81	-0.5
933,016	-		Sama_0754	0.81	+0.7
933,023	-		Sama_0754	0.82	+0.1
933,048	+		Sama_0754	0.83	-0.6
933,048	+		Sama_0754	0.83	+0.4
933,200	+				-0.2
933,200	+				-1.5
933,200	+				-0.3
933,200	+				-1.8
933,200	+				+0.7
933,201	-				-1.7
933,201	-				+1.1
933,201	-				-0.5
933,204	+				-0.4
933,262	+				+1.1
933,262	+				+0.1
933,263	-				-0.9
933,263	-				+2.2
933,382	+				-0.5
933,383	-				-0.6
933,383	-				-1.0
933,384	+				-1.1
933,384	+				-0.5
933,385	-				+0.0
933,385	-				+0.9
933,385	-				+0.0
933,385	-				+0.3
933,391	-				+0.7
933,400	+				-0.8
933,401	-				-0.3
933,401	-				+0.7
933,426	+				-0.6
933,426	+				+0.1
933,426	+				+1.1
933,427	-				-1.9
933,427	-				-0.3
933,427	-				+0.1
933,430	-				+0.4
933,430	-				-0.6
933,562	-				+0.4
933,572	+				-2.2
933,572	+				+0.3
933,572	+				-0.4
933,572	+				+0.9
933,572	+				+0.5
933,578	+				-0.1
933,578	+				+1.0
933,578	+				-0.2
933,579	-				-0.3
933,579	-				+0.6
933,579	-				-0.1
933,588	+				-0.3
933,588	+				-0.3
933,589	-				+0.1
933,598	+				+1.5
933,599	-				+0.3
933,626	+				+0.9
933,626	+				+1.3
933,627	-				-0.2
933,627	-				+0.1
933,643	+				+0.6
933,643	+				+0.3
933,643	+				+0.3
933,701	+				-0.4
933,744	+		Sama_0755	0.11	+0.3
933,755	+		Sama_0755	0.11	+0.2
933,756	-		Sama_0755	0.11	-0.1
933,756	-		Sama_0755	0.11	-1.7
933,756	-		Sama_0755	0.11	-1.4
933,774	+		Sama_0755	0.12	+1.2
933,774	+		Sama_0755	0.12	-0.7
933,774	+		Sama_0755	0.12	-0.9
933,775	-		Sama_0755	0.12	+0.1
933,775	-		Sama_0755	0.12	-0.6
933,776	+		Sama_0755	0.12	+0.0
933,776	+		Sama_0755	0.12	-0.8
933,776	+		Sama_0755	0.12	+0.1
933,776	+		Sama_0755	0.12	-0.7
933,776	+		Sama_0755	0.12	+0.2
933,777	-		Sama_0755	0.12	-0.4
933,777	-		Sama_0755	0.12	-1.4
933,777	-		Sama_0755	0.12	-0.1
933,777	-		Sama_0755	0.12	-0.9
933,777	-		Sama_0755	0.12	+0.1
933,777	-		Sama_0755	0.12	+0.1
933,848	+		Sama_0755	0.16	+0.3
933,848	+		Sama_0755	0.16	+0.7
933,849	-		Sama_0755	0.16	-0.6
933,857	+		Sama_0755	0.16	-0.7
933,857	+		Sama_0755	0.16	+0.1
933,857	+		Sama_0755	0.16	-0.2
933,932	+		Sama_0755	0.20	-0.4
933,933	-		Sama_0755	0.20	+0.1
933,989	+		Sama_0755	0.23	+0.0
934,008	+		Sama_0755	0.24	-1.4
934,008	+		Sama_0755	0.24	-0.4
934,008	+		Sama_0755	0.24	+0.6
934,008	+		Sama_0755	0.24	+1.1
934,009	-		Sama_0755	0.24	-0.1
934,102	+		Sama_0755	0.28	-2.2
934,103	-		Sama_0755	0.28	-0.2
934,103	-		Sama_0755	0.28	-0.0
934,106	+		Sama_0755	0.28	+1.2
934,106	+		Sama_0755	0.28	+0.7
934,106	+		Sama_0755	0.28	+0.8
934,106	+		Sama_0755	0.28	-0.5
934,106	+		Sama_0755	0.28	+0.1
934,106	+		Sama_0755	0.28	+0.4
934,107	-		Sama_0755	0.28	+1.1
934,185	+		Sama_0755	0.32	+1.2
934,185	+		Sama_0755	0.32	+0.6
934,203	-		Sama_0755	0.33	+1.1
934,203	-		Sama_0755	0.33	+2.0
934,232	+		Sama_0755	0.34	+0.2
934,274	+		Sama_0755	0.36	+1.6
934,275	-		Sama_0755	0.37	-0.7
934,275	-		Sama_0755	0.37	-0.3
934,275	-		Sama_0755	0.37	-0.6
934,327	-		Sama_0755	0.39	-1.5
934,332	+		Sama_0755	0.39	-0.9
934,333	-		Sama_0755	0.39	-0.2