Strain Fitness in Shewanella amazonensis SB2B around Sama_0711

Experiment: Spectinomycin 0.0125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0709 and Sama_0710 are separated by 8 nucleotidesSama_0710 and Sama_0711 are separated by 1 nucleotidesSama_0711 and Sama_0712 overlap by 13 nucleotidesSama_0712 and Sama_0713 overlap by 4 nucleotides Sama_0709: Sama_0709 - putative type II secretion system protein F (RefSeq), at 871,986 to 872,837 _0709 Sama_0710: Sama_0710 - putative type II secretion system protein F (RefSeq), at 872,846 to 873,709 _0710 Sama_0711: Sama_0711 - hypothetical protein (RefSeq), at 873,711 to 874,055 _0711 Sama_0712: Sama_0712 - hypothetical protein (RefSeq), at 874,043 to 874,528 _0712 Sama_0713: Sama_0713 - hypothetical protein (RefSeq), at 874,525 to 875,211 _0713 Position (kb) 873 874 875Strain fitness (log2 ratio) -2 -1 0 1 2 3at 872.711 kb on + strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.722 kb on + strand, within Sama_0709at 872.723 kb on - strand, within Sama_0709at 872.768 kb on - strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.800 kb on - strandat 872.830 kb on - strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.836 kb on - strandat 872.836 kb on - strandat 872.870 kb on + strandat 872.870 kb on + strandat 872.871 kb on - strandat 872.871 kb on - strandat 872.871 kb on - strandat 872.916 kb on - strandat 872.947 kb on + strand, within Sama_0710at 873.009 kb on - strand, within Sama_0710at 873.009 kb on - strand, within Sama_0710at 873.035 kb on + strand, within Sama_0710at 873.035 kb on + strand, within Sama_0710at 873.036 kb on - strand, within Sama_0710at 873.036 kb on - strand, within Sama_0710at 873.047 kb on - strand, within Sama_0710at 873.066 kb on + strand, within Sama_0710at 873.075 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.081 kb on - strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.142 kb on + strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.177 kb on + strand, within Sama_0710at 873.178 kb on - strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.246 kb on + strand, within Sama_0710at 873.247 kb on - strand, within Sama_0710at 873.253 kb on + strand, within Sama_0710at 873.254 kb on - strand, within Sama_0710at 873.290 kb on + strand, within Sama_0710at 873.291 kb on - strand, within Sama_0710at 873.291 kb on - strand, within Sama_0710at 873.395 kb on + strand, within Sama_0710at 873.424 kb on + strand, within Sama_0710at 873.425 kb on - strand, within Sama_0710at 873.471 kb on + strand, within Sama_0710at 873.471 kb on + strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.536 kb on + strand, within Sama_0710at 873.536 kb on + strand, within Sama_0710at 873.537 kb on - strand, within Sama_0710at 873.635 kb on - strandat 873.643 kb on + strandat 873.644 kb on - strandat 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.879 kb on + strand, within Sama_0711at 873.880 kb on - strand, within Sama_0711at 873.880 kb on - strand, within Sama_0711at 873.929 kb on - strand, within Sama_0711at 873.982 kb on + strand, within Sama_0711at 873.982 kb on + strand, within Sama_0711at 874.040 kb on + strandat 874.048 kb on + strandat 874.057 kb on + strandat 874.102 kb on + strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.118 kb on - strand, within Sama_0712at 874.147 kb on + strand, within Sama_0712at 874.147 kb on + strand, within Sama_0712at 874.147 kb on + strand, within Sama_0712at 874.148 kb on - strand, within Sama_0712at 874.148 kb on - strand, within Sama_0712at 874.179 kb on - strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.181 kb on - strand, within Sama_0712at 874.215 kb on - strand, within Sama_0712at 874.244 kb on + strand, within Sama_0712at 874.244 kb on + strand, within Sama_0712at 874.245 kb on - strand, within Sama_0712at 874.245 kb on - strand, within Sama_0712at 874.245 kb on - strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.329 kb on - strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.362 kb on - strand, within Sama_0712at 874.362 kb on - strand, within Sama_0712at 874.429 kb on + strand, within Sama_0712at 874.430 kb on - strand, within Sama_0712at 874.455 kb on + strand, within Sama_0712at 874.455 kb on + strand, within Sama_0712at 874.456 kb on - strand, within Sama_0712at 874.520 kb on - strandat 874.631 kb on + strand, within Sama_0713at 874.631 kb on + strand, within Sama_0713at 874.632 kb on - strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.657 kb on - strand, within Sama_0713at 874.691 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.765 kb on + strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.766 kb on - strand, within Sama_0713at 874.885 kb on - strand, within Sama_0713at 874.888 kb on + strand, within Sama_0713at 874.908 kb on + strand, within Sama_0713at 874.908 kb on + strand, within Sama_0713at 874.908 kb on + strand, within Sama_0713at 874.909 kb on - strand, within Sama_0713at 874.909 kb on - strand, within Sama_0713at 874.909 kb on - strand, within Sama_0713at 874.918 kb on + strand, within Sama_0713at 874.919 kb on - strand, within Sama_0713at 874.919 kb on - strand, within Sama_0713at 874.945 kb on + strand, within Sama_0713at 874.945 kb on + strand, within Sama_0713at 874.983 kb on + strand, within Sama_0713at 874.984 kb on - strand, within Sama_0713at 874.992 kb on + strand, within Sama_0713at 874.992 kb on + strand, within Sama_0713at 875.010 kb on - strand, within Sama_0713at 875.018 kb on + strand, within Sama_0713at 875.018 kb on + strand, within Sama_0713at 875.018 kb on + strand, within Sama_0713at 875.019 kb on - strand, within Sama_0713

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml
remove
872,711 + Sama_0709 0.85 -1.1
872,712 - Sama_0709 0.85 -0.0
872,712 - Sama_0709 0.85 -0.4
872,712 - Sama_0709 0.85 -2.5
872,712 - Sama_0709 0.85 -0.0
872,722 + Sama_0709 0.86 +0.4
872,723 - Sama_0709 0.87 +0.0
872,768 - +0.1
872,799 + -0.8
872,799 + +0.6
872,799 + -1.6
872,799 + -0.2
872,800 - +0.2
872,830 - +0.1
872,835 + -0.4
872,835 + +0.3
872,835 + -0.5
872,835 + +0.7
872,836 - -1.0
872,836 - +0.4
872,870 + -1.2
872,870 + +0.1
872,871 - -1.0
872,871 - +0.6
872,871 - -1.0
872,916 - -0.2
872,947 + Sama_0710 0.12 +2.3
873,009 - Sama_0710 0.19 -2.5
873,009 - Sama_0710 0.19 +0.3
873,035 + Sama_0710 0.22 -0.9
873,035 + Sama_0710 0.22 -1.1
873,036 - Sama_0710 0.22 -0.2
873,036 - Sama_0710 0.22 +0.5
873,047 - Sama_0710 0.23 +0.5
873,066 + Sama_0710 0.25 -0.5
873,075 + Sama_0710 0.27 -0.3
873,080 + Sama_0710 0.27 +0.4
873,080 + Sama_0710 0.27 -0.6
873,080 + Sama_0710 0.27 -0.9
873,080 + Sama_0710 0.27 +0.7
873,081 - Sama_0710 0.27 +0.7
873,101 + Sama_0710 0.30 +0.2
873,101 + Sama_0710 0.30 -0.4
873,101 + Sama_0710 0.30 -0.3
873,102 - Sama_0710 0.30 -2.2
873,102 - Sama_0710 0.30 -1.9
873,102 - Sama_0710 0.30 -1.1
873,102 - Sama_0710 0.30 -0.6
873,102 - Sama_0710 0.30 +0.2
873,102 - Sama_0710 0.30 +0.1
873,102 - Sama_0710 0.30 -0.2
873,102 - Sama_0710 0.30 -0.9
873,142 + Sama_0710 0.34 +0.4
873,143 - Sama_0710 0.34 +1.4
873,143 - Sama_0710 0.34 +0.0
873,143 - Sama_0710 0.34 +0.7
873,143 - Sama_0710 0.34 -0.3
873,143 - Sama_0710 0.34 +0.2
873,177 + Sama_0710 0.38 +0.3
873,178 - Sama_0710 0.38 +0.3
873,188 + Sama_0710 0.40 -0.7
873,188 + Sama_0710 0.40 +0.2
873,188 + Sama_0710 0.40 +0.2
873,188 + Sama_0710 0.40 -0.2
873,189 - Sama_0710 0.40 +0.9
873,189 - Sama_0710 0.40 +0.7
873,189 - Sama_0710 0.40 -1.5
873,189 - Sama_0710 0.40 +0.1
873,246 + Sama_0710 0.46 -0.7
873,247 - Sama_0710 0.46 +1.7
873,253 + Sama_0710 0.47 +0.3
873,254 - Sama_0710 0.47 -0.3
873,290 + Sama_0710 0.51 -0.3
873,291 - Sama_0710 0.52 -0.6
873,291 - Sama_0710 0.52 +0.5
873,395 + Sama_0710 0.64 -0.6
873,424 + Sama_0710 0.67 -0.4
873,425 - Sama_0710 0.67 +0.2
873,471 + Sama_0710 0.72 -0.4
873,471 + Sama_0710 0.72 +0.5
873,472 - Sama_0710 0.72 +0.5
873,472 - Sama_0710 0.72 -0.8
873,472 - Sama_0710 0.72 +0.7
873,482 - Sama_0710 0.74 -1.3
873,482 - Sama_0710 0.74 +0.3
873,482 - Sama_0710 0.74 +3.0
873,536 + Sama_0710 0.80 -0.7
873,536 + Sama_0710 0.80 -1.3
873,537 - Sama_0710 0.80 +0.6
873,635 - +0.5
873,643 + +0.1
873,644 - -0.6
873,761 - Sama_0711 0.14 +0.7
873,761 - Sama_0711 0.14 -2.3
873,761 - Sama_0711 0.14 -1.2
873,761 - Sama_0711 0.14 +0.1
873,879 + Sama_0711 0.49 -0.9
873,880 - Sama_0711 0.49 -2.5
873,880 - Sama_0711 0.49 -0.2
873,929 - Sama_0711 0.63 -0.5
873,982 + Sama_0711 0.79 -0.5
873,982 + Sama_0711 0.79 -0.0
874,040 + -0.8
874,048 + +0.7
874,057 + -0.2
874,102 + Sama_0712 0.12 -0.7
874,103 - Sama_0712 0.12 -0.1
874,103 - Sama_0712 0.12 -0.7
874,103 - Sama_0712 0.12 -1.5
874,103 - Sama_0712 0.12 -0.2
874,103 - Sama_0712 0.12 +0.1
874,118 - Sama_0712 0.15 -0.4
874,147 + Sama_0712 0.21 -0.5
874,147 + Sama_0712 0.21 +0.2
874,147 + Sama_0712 0.21 -1.0
874,148 - Sama_0712 0.22 -1.3
874,148 - Sama_0712 0.22 -0.7
874,179 - Sama_0712 0.28 +0.3
874,180 + Sama_0712 0.28 -0.3
874,180 + Sama_0712 0.28 -0.6
874,180 + Sama_0712 0.28 -1.1
874,180 + Sama_0712 0.28 -0.1
874,180 + Sama_0712 0.28 +0.4
874,181 - Sama_0712 0.28 +0.1
874,215 - Sama_0712 0.35 -1.1
874,244 + Sama_0712 0.41 +0.1
874,244 + Sama_0712 0.41 -0.8
874,245 - Sama_0712 0.42 +0.1
874,245 - Sama_0712 0.42 -0.2
874,245 - Sama_0712 0.42 -0.5
874,277 + Sama_0712 0.48 -0.9
874,277 + Sama_0712 0.48 +0.8
874,277 + Sama_0712 0.48 +0.8
874,277 + Sama_0712 0.48 +0.7
874,277 + Sama_0712 0.48 +1.0
874,277 + Sama_0712 0.48 +0.4
874,277 + Sama_0712 0.48 -0.6
874,277 + Sama_0712 0.48 -1.1
874,278 - Sama_0712 0.48 +0.7
874,278 - Sama_0712 0.48 +0.1
874,278 - Sama_0712 0.48 +0.0
874,278 - Sama_0712 0.48 -0.2
874,278 - Sama_0712 0.48 -0.6
874,278 - Sama_0712 0.48 -0.5
874,329 - Sama_0712 0.59 -1.9
874,361 + Sama_0712 0.65 +0.5
874,361 + Sama_0712 0.65 +0.1
874,361 + Sama_0712 0.65 -0.8
874,361 + Sama_0712 0.65 +0.4
874,361 + Sama_0712 0.65 +0.2
874,362 - Sama_0712 0.66 +0.5
874,362 - Sama_0712 0.66 +0.9
874,429 + Sama_0712 0.79 -0.5
874,430 - Sama_0712 0.80 -0.0
874,455 + Sama_0712 0.85 -0.2
874,455 + Sama_0712 0.85 -1.1
874,456 - Sama_0712 0.85 +0.7
874,520 - +0.4
874,631 + Sama_0713 0.15 -0.2
874,631 + Sama_0713 0.15 -0.5
874,632 - Sama_0713 0.16 -0.7
874,648 + Sama_0713 0.18 +0.5
874,648 + Sama_0713 0.18 -1.1
874,648 + Sama_0713 0.18 -0.7
874,648 + Sama_0713 0.18 -0.9
874,648 + Sama_0713 0.18 -0.1
874,648 + Sama_0713 0.18 -0.8
874,649 - Sama_0713 0.18 -1.7
874,649 - Sama_0713 0.18 +0.0
874,649 - Sama_0713 0.18 -0.8
874,649 - Sama_0713 0.18 +0.2
874,649 - Sama_0713 0.18 -0.8
874,649 - Sama_0713 0.18 -0.5
874,657 - Sama_0713 0.19 +0.9
874,691 + Sama_0713 0.24 -0.1
874,765 + Sama_0713 0.35 -0.7
874,765 + Sama_0713 0.35 -0.7
874,765 + Sama_0713 0.35 +0.7
874,765 + Sama_0713 0.35 -0.3
874,765 + Sama_0713 0.35 +0.0
874,765 + Sama_0713 0.35 -1.1
874,765 + Sama_0713 0.35 -0.1
874,765 + Sama_0713 0.35 +0.2
874,765 + Sama_0713 0.35 -0.4
874,766 - Sama_0713 0.35 +1.7
874,766 - Sama_0713 0.35 +0.0
874,766 - Sama_0713 0.35 -1.3
874,766 - Sama_0713 0.35 -0.5
874,766 - Sama_0713 0.35 -0.2
874,766 - Sama_0713 0.35 -0.5
874,766 - Sama_0713 0.35 +0.4
874,766 - Sama_0713 0.35 +0.5
874,766 - Sama_0713 0.35 +0.6
874,885 - Sama_0713 0.52 -0.5
874,888 + Sama_0713 0.53 -1.3
874,908 + Sama_0713 0.56 -0.2
874,908 + Sama_0713 0.56 -0.3
874,908 + Sama_0713 0.56 -0.2
874,909 - Sama_0713 0.56 -0.0
874,909 - Sama_0713 0.56 -0.8
874,909 - Sama_0713 0.56 +0.6
874,918 + Sama_0713 0.57 -0.5
874,919 - Sama_0713 0.57 -2.1
874,919 - Sama_0713 0.57 +0.7
874,945 + Sama_0713 0.61 -1.0
874,945 + Sama_0713 0.61 -0.2
874,983 + Sama_0713 0.67 -0.6
874,984 - Sama_0713 0.67 +0.0
874,992 + Sama_0713 0.68 +0.5
874,992 + Sama_0713 0.68 +0.3
875,010 - Sama_0713 0.71 +0.1
875,018 + Sama_0713 0.72 +1.0
875,018 + Sama_0713 0.72 -0.8
875,018 + Sama_0713 0.72 -1.3
875,019 - Sama_0713 0.72 -0.1

Or see this region's nucleotide sequence