Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0641 and Sama_0642 are separated by 145 nucleotides Sama_0642 and Sama_0643 are separated by 141 nucleotides
Sama_0641: Sama_0641 - hypothetical protein (RefSeq), at 796,210 to 797,187
_0641
Sama_0642: Sama_0642 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq), at 797,333 to 798,097
_0642
Sama_0643: Sama_0643 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 798,239 to 799,675
_0643
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.468 kb on + strand, within Sama_0641 at 796.474 kb on + strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.647 kb on - strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.867 kb on + strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.897 kb on + strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 797.072 kb on + strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.169 kb on - strand at 797.179 kb on - strand at 797.210 kb on + strand at 797.210 kb on + strand at 797.248 kb on + strand at 797.248 kb on + strand at 797.249 kb on - strand at 797.249 kb on - strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.267 kb on - strand at 797.267 kb on - strand at 797.288 kb on + strand at 797.298 kb on + strand at 797.303 kb on + strand at 797.303 kb on + strand at 797.320 kb on + strand at 797.345 kb on + strand at 797.382 kb on + strand at 797.383 kb on - strand at 797.392 kb on + strand at 797.392 kb on + strand at 797.395 kb on + strand at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.490 kb on - strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.946 kb on + strand, within Sama_0642 at 797.957 kb on + strand, within Sama_0642 at 797.988 kb on - strand, within Sama_0642 at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.098 kb on + strand at 798.099 kb on - strand at 798.099 kb on - strand at 798.113 kb on + strand at 798.114 kb on - strand at 798.203 kb on + strand at 798.206 kb on + strand at 798.234 kb on + strand at 798.234 kb on + strand at 798.262 kb on + strand at 798.262 kb on + strand at 798.262 kb on + strand at 798.327 kb on + strand at 798.328 kb on - strand at 798.328 kb on - strand at 798.381 kb on + strand at 798.424 kb on + strand, within Sama_0643 at 798.424 kb on + strand, within Sama_0643 at 798.425 kb on - strand, within Sama_0643 at 798.557 kb on + strand, within Sama_0643 at 798.557 kb on + strand, within Sama_0643 at 798.558 kb on - strand, within Sama_0643 at 798.646 kb on - strand, within Sama_0643 at 798.663 kb on + strand, within Sama_0643 at 798.663 kb on + strand, within Sama_0643 at 798.682 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.835 kb on + strand, within Sama_0643 at 798.871 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 796,336 + Sama_0641 0.13 +1.1 796,336 + Sama_0641 0.13 +0.1 796,336 + Sama_0641 0.13 +0.3 796,336 + Sama_0641 0.13 +0.3 796,336 + Sama_0641 0.13 +0.1 796,336 + Sama_0641 0.13 -0.0 796,337 - Sama_0641 0.13 -1.3 796,337 - Sama_0641 0.13 -0.6 796,337 - Sama_0641 0.13 -0.3 796,337 - Sama_0641 0.13 +0.2 796,337 - Sama_0641 0.13 -0.8 796,337 - Sama_0641 0.13 -1.3 796,337 - Sama_0641 0.13 +1.0 796,337 - Sama_0641 0.13 -0.7 796,337 - Sama_0641 0.13 -0.2 796,468 + Sama_0641 0.26 +0.4 796,474 + Sama_0641 0.27 -0.8 796,475 - Sama_0641 0.27 +0.7 796,475 - Sama_0641 0.27 +0.4 796,646 + Sama_0641 0.45 +0.2 796,646 + Sama_0641 0.45 -0.2 796,647 - Sama_0641 0.45 -0.3 796,731 + Sama_0641 0.53 +0.3 796,731 + Sama_0641 0.53 -0.2 796,732 - Sama_0641 0.53 -0.3 796,732 - Sama_0641 0.53 +1.1 796,783 + Sama_0641 0.59 -0.0 796,783 + Sama_0641 0.59 -0.9 796,784 - Sama_0641 0.59 +1.4 796,784 - Sama_0641 0.59 -0.0 796,867 + Sama_0641 0.67 -0.9 796,868 - Sama_0641 0.67 +0.1 796,868 - Sama_0641 0.67 -0.3 796,868 - Sama_0641 0.67 -0.2 796,897 + Sama_0641 0.70 -1.0 796,898 - Sama_0641 0.70 -0.5 796,898 - Sama_0641 0.70 -1.1 797,072 + Sama_0641 0.88 +0.3 797,073 - Sama_0641 0.88 -0.3 797,073 - Sama_0641 0.88 +0.1 797,073 - Sama_0641 0.88 +0.6 797,073 - Sama_0641 0.88 +2.1 797,163 + +0.3 797,163 + +0.5 797,163 + +0.3 797,163 + +0.7 797,163 + -1.2 797,163 + -0.3 797,163 + -0.1 797,163 + -0.3 797,163 + -1.5 797,163 + +0.8 797,163 + +0.5 797,163 + +0.2 797,163 + +0.6 797,163 + -0.6 797,163 + -0.6 797,164 - +0.9 797,164 - +0.6 797,164 - +0.6 797,164 - -0.1 797,164 - -0.3 797,164 - -1.1 797,164 - +0.1 797,164 - -1.3 797,164 - -0.7 797,164 - -0.5 797,167 + +0.8 797,167 + -0.1 797,167 + -0.0 797,167 + -0.2 797,167 + -0.5 797,167 + +0.2 797,167 + -0.8 797,167 + +1.0 797,167 + +0.9 797,168 - -1.1 797,168 - -0.7 797,168 - +0.3 797,168 - +0.5 797,168 - +0.2 797,168 - +1.4 797,168 - +0.1 797,168 - -1.3 797,168 - -0.1 797,168 - -0.4 797,169 - -0.3 797,179 - -0.6 797,210 + +0.3 797,210 + +0.5 797,248 + +1.1 797,248 + -0.9 797,249 - -0.3 797,249 - -0.7 797,254 + -1.0 797,254 + +0.4 797,254 + -1.3 797,257 + -0.1 797,257 + +0.4 797,257 + -0.2 797,257 + -0.3 797,257 + +1.0 797,257 + +0.3 797,258 - -0.1 797,258 - -1.3 797,258 - -0.6 797,261 + -0.0 797,261 + +1.1 797,261 + -0.2 797,261 + +0.2 797,261 + -0.6 797,261 + +0.6 797,261 + +0.7 797,262 - +0.7 797,262 - -0.3 797,262 - +1.4 797,264 + -0.2 797,264 + -0.2 797,264 + +1.0 797,264 + -0.8 797,264 + -0.1 797,266 + -0.1 797,266 + +0.0 797,266 + +0.9 797,266 + -0.8 797,267 - -1.2 797,267 - -2.0 797,288 + -0.8 797,298 + -0.3 797,303 + +0.1 797,303 + -1.4 797,320 + -0.8 797,345 + -1.0 797,382 + -1.5 797,383 - -0.0 797,392 + -2.9 797,392 + -2.0 797,395 + -2.2 797,462 + Sama_0642 0.17 -2.0 797,462 + Sama_0642 0.17 -1.9 797,462 + Sama_0642 0.17 -0.1 797,489 + Sama_0642 0.20 -0.3 797,489 + Sama_0642 0.20 -2.9 797,490 - Sama_0642 0.21 +0.1 797,769 + Sama_0642 0.57 -1.0 797,769 + Sama_0642 0.57 -0.3 797,946 + Sama_0642 0.80 -1.0 797,957 + Sama_0642 0.82 +0.3 797,988 - Sama_0642 0.86 -2.2 798,095 + +0.1 798,095 + -0.7 798,095 + +0.1 798,095 + -0.1 798,095 + -0.9 798,096 - -0.8 798,096 - +0.0 798,096 - -0.3 798,096 - -1.6 798,098 + +0.2 798,099 - -0.9 798,099 - -0.4 798,113 + -1.2 798,114 - -0.9 798,203 + +1.0 798,206 + -0.7 798,234 + +1.0 798,234 + +0.4 798,262 + +0.1 798,262 + -0.9 798,262 + -0.2 798,327 + +0.5 798,328 - -0.8 798,328 - -0.3 798,381 + -0.4 798,424 + Sama_0643 0.13 +1.1 798,424 + Sama_0643 0.13 -1.3 798,425 - Sama_0643 0.13 -0.5 798,557 + Sama_0643 0.22 -0.0 798,557 + Sama_0643 0.22 -0.0 798,558 - Sama_0643 0.22 +1.0 798,646 - Sama_0643 0.28 -0.6 798,663 + Sama_0643 0.30 +1.0 798,663 + Sama_0643 0.30 -0.1 798,682 + Sama_0643 0.31 -0.4 798,707 + Sama_0643 0.33 -0.3 798,707 + Sama_0643 0.33 +1.0 798,707 + Sama_0643 0.33 -1.3 798,707 + Sama_0643 0.33 +0.3 798,707 + Sama_0643 0.33 -0.3 798,708 - Sama_0643 0.33 -0.2 798,708 - Sama_0643 0.33 -0.4 798,708 - Sama_0643 0.33 -0.2 798,708 - Sama_0643 0.33 -0.3 798,835 + Sama_0643 0.41 -1.9 798,871 + Sama_0643 0.44 +0.1 798,919 + Sama_0643 0.47 -0.9 798,919 + Sama_0643 0.47 +0.7 798,919 + Sama_0643 0.47 +0.3 798,919 + Sama_0643 0.47 +0.4 798,929 + Sama_0643 0.48 -0.7 798,929 + Sama_0643 0.48 +0.4 798,929 + Sama_0643 0.48 -0.0 798,929 + Sama_0643 0.48 +1.0 798,929 + Sama_0643 0.48 -1.0 798,929 + Sama_0643 0.48 -0.2 798,929 + Sama_0643 0.48 -1.0 798,929 + Sama_0643 0.48 -0.3 798,930 - Sama_0643 0.48 +0.5 798,930 - Sama_0643 0.48 -0.9 798,930 - Sama_0643 0.48 +1.5 798,930 - Sama_0643 0.48 -1.9 798,930 - Sama_0643 0.48 -0.9 798,997 + Sama_0643 0.53 +1.2 798,997 + Sama_0643 0.53 -0.7 798,998 - Sama_0643 0.53 +0.7 798,998 - Sama_0643 0.53 -0.6 798,998 - Sama_0643 0.53 -0.2
Or see this region's nucleotide sequence