Strain Fitness in Shewanella amazonensis SB2B around Sama_0522

Experiment: Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0521 and Sama_0522 are separated by 128 nucleotidesSama_0522 and Sama_0523 are separated by 130 nucleotides Sama_0521: Sama_0521 - TonB-dependent receptor (RefSeq), at 640,698 to 642,974 _0521 Sama_0522: Sama_0522 - response regulator receiver protein (RefSeq), at 643,103 to 643,774 _0522 Sama_0523: Sama_0523 - sensory box sensor histidine kinase/response regulator (RefSeq), at 643,905 to 647,444 _0523 Position (kb) 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 642.114 kb on - strand, within Sama_0521at 642.125 kb on - strand, within Sama_0521at 642.155 kb on + strand, within Sama_0521at 642.155 kb on + strand, within Sama_0521at 642.156 kb on - strand, within Sama_0521at 642.194 kb on + strand, within Sama_0521at 642.194 kb on + strand, within Sama_0521at 642.194 kb on + strand, within Sama_0521at 642.194 kb on + strand, within Sama_0521at 642.195 kb on - strand, within Sama_0521at 642.195 kb on - strand, within Sama_0521at 642.195 kb on - strand, within Sama_0521at 642.195 kb on - strand, within Sama_0521at 642.195 kb on - strand, within Sama_0521at 642.195 kb on - strand, within Sama_0521at 642.204 kb on + strand, within Sama_0521at 642.204 kb on + strand, within Sama_0521at 642.204 kb on + strand, within Sama_0521at 642.204 kb on + strand, within Sama_0521at 642.205 kb on - strand, within Sama_0521at 642.205 kb on - strand, within Sama_0521at 642.213 kb on + strand, within Sama_0521at 642.214 kb on - strand, within Sama_0521at 642.243 kb on - strand, within Sama_0521at 642.243 kb on - strand, within Sama_0521at 642.329 kb on + strand, within Sama_0521at 642.329 kb on + strand, within Sama_0521at 642.330 kb on - strand, within Sama_0521at 642.358 kb on - strand, within Sama_0521at 642.369 kb on - strand, within Sama_0521at 642.392 kb on - strand, within Sama_0521at 642.392 kb on - strand, within Sama_0521at 642.443 kb on + strand, within Sama_0521at 642.444 kb on - strand, within Sama_0521at 642.444 kb on - strand, within Sama_0521at 642.444 kb on - strand, within Sama_0521at 642.444 kb on - strand, within Sama_0521at 642.444 kb on - strand, within Sama_0521at 642.524 kb on + strand, within Sama_0521at 642.525 kb on - strand, within Sama_0521at 642.525 kb on - strand, within Sama_0521at 642.548 kb on - strand, within Sama_0521at 642.548 kb on - strand, within Sama_0521at 642.548 kb on - strand, within Sama_0521at 642.548 kb on - strand, within Sama_0521at 642.548 kb on - strand, within Sama_0521at 642.548 kb on - strand, within Sama_0521at 642.594 kb on + strand, within Sama_0521at 642.594 kb on + strand, within Sama_0521at 642.594 kb on + strand, within Sama_0521at 642.594 kb on + strand, within Sama_0521at 642.594 kb on + strand, within Sama_0521at 642.594 kb on + strand, within Sama_0521at 642.595 kb on - strand, within Sama_0521at 642.595 kb on - strand, within Sama_0521at 642.595 kb on - strand, within Sama_0521at 642.595 kb on - strand, within Sama_0521at 642.687 kb on + strand, within Sama_0521at 642.687 kb on + strand, within Sama_0521at 642.690 kb on + strand, within Sama_0521at 642.690 kb on + strand, within Sama_0521at 642.690 kb on + strand, within Sama_0521at 642.691 kb on - strand, within Sama_0521at 642.691 kb on - strand, within Sama_0521at 642.691 kb on - strand, within Sama_0521at 642.693 kb on + strand, within Sama_0521at 642.705 kb on + strand, within Sama_0521at 642.705 kb on + strand, within Sama_0521at 642.705 kb on + strand, within Sama_0521at 642.706 kb on - strand, within Sama_0521at 642.777 kb on + strandat 642.837 kb on + strandat 642.837 kb on + strandat 642.837 kb on + strandat 642.837 kb on + strandat 642.837 kb on + strandat 642.837 kb on + strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.838 kb on - strandat 642.848 kb on + strandat 642.849 kb on - strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.852 kb on + strandat 642.853 kb on - strandat 642.853 kb on - strandat 642.853 kb on - strandat 642.853 kb on - strandat 642.862 kb on + strandat 642.885 kb on + strandat 642.885 kb on + strandat 642.886 kb on - strandat 642.886 kb on - strandat 642.917 kb on - strandat 642.917 kb on - strandat 642.917 kb on - strandat 642.958 kb on + strandat 642.959 kb on - strandat 642.963 kb on + strandat 642.979 kb on + strandat 643.073 kb on - strandat 643.143 kb on + strandat 643.144 kb on - strandat 643.144 kb on - strandat 643.158 kb on + strandat 643.197 kb on + strand, within Sama_0522at 643.198 kb on - strand, within Sama_0522at 643.279 kb on + strand, within Sama_0522at 643.279 kb on + strand, within Sama_0522at 643.280 kb on - strand, within Sama_0522at 643.280 kb on - strand, within Sama_0522at 643.309 kb on - strand, within Sama_0522at 643.341 kb on + strand, within Sama_0522at 643.342 kb on - strand, within Sama_0522at 643.348 kb on + strand, within Sama_0522at 643.348 kb on + strand, within Sama_0522at 643.348 kb on + strand, within Sama_0522at 643.390 kb on + strand, within Sama_0522at 643.390 kb on + strand, within Sama_0522at 643.390 kb on + strand, within Sama_0522at 643.391 kb on - strand, within Sama_0522at 643.391 kb on - strand, within Sama_0522at 643.391 kb on - strand, within Sama_0522at 643.393 kb on + strand, within Sama_0522at 643.393 kb on + strand, within Sama_0522at 643.415 kb on - strand, within Sama_0522at 643.443 kb on + strand, within Sama_0522at 643.444 kb on - strand, within Sama_0522at 643.455 kb on + strand, within Sama_0522at 643.456 kb on - strand, within Sama_0522at 643.501 kb on + strand, within Sama_0522at 643.501 kb on + strand, within Sama_0522at 643.501 kb on + strand, within Sama_0522at 643.501 kb on + strand, within Sama_0522at 643.501 kb on + strand, within Sama_0522at 643.501 kb on + strand, within Sama_0522at 643.502 kb on - strand, within Sama_0522at 643.502 kb on - strand, within Sama_0522at 643.502 kb on - strand, within Sama_0522at 643.577 kb on + strand, within Sama_0522at 643.577 kb on + strand, within Sama_0522at 643.577 kb on + strand, within Sama_0522at 643.578 kb on - strand, within Sama_0522at 643.578 kb on - strand, within Sama_0522at 643.578 kb on - strand, within Sama_0522at 643.578 kb on - strand, within Sama_0522at 643.581 kb on + strand, within Sama_0522at 643.612 kb on + strand, within Sama_0522at 643.612 kb on + strand, within Sama_0522at 643.612 kb on + strand, within Sama_0522at 643.612 kb on + strand, within Sama_0522at 643.612 kb on + strand, within Sama_0522at 643.613 kb on - strand, within Sama_0522at 643.613 kb on - strand, within Sama_0522at 643.613 kb on - strand, within Sama_0522at 643.613 kb on - strand, within Sama_0522at 643.615 kb on + strand, within Sama_0522at 643.615 kb on + strand, within Sama_0522at 643.615 kb on + strand, within Sama_0522at 643.616 kb on - strand, within Sama_0522at 643.616 kb on - strand, within Sama_0522at 643.629 kb on - strand, within Sama_0522at 643.629 kb on - strand, within Sama_0522at 643.639 kb on + strand, within Sama_0522at 643.697 kb on + strand, within Sama_0522at 643.697 kb on + strand, within Sama_0522at 643.697 kb on + strand, within Sama_0522at 643.698 kb on - strand, within Sama_0522at 643.777 kb on - strandat 643.820 kb on + strandat 643.920 kb on - strandat 643.920 kb on - strandat 643.931 kb on + strandat 643.932 kb on - strandat 643.932 kb on - strandat 644.114 kb on - strandat 644.141 kb on + strandat 644.141 kb on + strandat 644.142 kb on - strandat 644.142 kb on - strandat 644.142 kb on - strandat 644.142 kb on - strandat 644.142 kb on - strandat 644.142 kb on - strandat 644.145 kb on + strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.174 kb on + strandat 644.174 kb on + strandat 644.175 kb on - strandat 644.175 kb on - strandat 644.191 kb on - strandat 644.195 kb on + strandat 644.195 kb on + strandat 644.195 kb on + strandat 644.195 kb on + strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.232 kb on + strandat 644.233 kb on - strandat 644.233 kb on - strandat 644.233 kb on - strandat 644.271 kb on - strand, within Sama_0523at 644.286 kb on + strand, within Sama_0523at 644.287 kb on - strand, within Sama_0523at 644.287 kb on - strand, within Sama_0523at 644.353 kb on - strand, within Sama_0523at 644.398 kb on + strand, within Sama_0523at 644.464 kb on - strand, within Sama_0523at 644.541 kb on - strand, within Sama_0523at 644.547 kb on + strand, within Sama_0523at 644.547 kb on + strand, within Sama_0523at 644.548 kb on - strand, within Sama_0523at 644.592 kb on + strand, within Sama_0523at 644.593 kb on - strand, within Sama_0523at 644.603 kb on + strand, within Sama_0523at 644.604 kb on - strand, within Sama_0523at 644.621 kb on + strand, within Sama_0523at 644.622 kb on - strand, within Sama_0523at 644.622 kb on - strand, within Sama_0523at 644.647 kb on - strand, within Sama_0523at 644.647 kb on - strand, within Sama_0523at 644.693 kb on - strand, within Sama_0523at 644.693 kb on - strand, within Sama_0523at 644.727 kb on - strand, within Sama_0523at 644.754 kb on + strand, within Sama_0523at 644.755 kb on - strand, within Sama_0523

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml
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642,114 - Sama_0521 0.62 -0.3
642,125 - Sama_0521 0.63 -0.9
642,155 + Sama_0521 0.64 -0.3
642,155 + Sama_0521 0.64 -0.2
642,156 - Sama_0521 0.64 -0.6
642,194 + Sama_0521 0.66 -0.8
642,194 + Sama_0521 0.66 -0.5
642,194 + Sama_0521 0.66 +0.8
642,194 + Sama_0521 0.66 +1.9
642,195 - Sama_0521 0.66 -0.4
642,195 - Sama_0521 0.66 -0.9
642,195 - Sama_0521 0.66 -0.3
642,195 - Sama_0521 0.66 +1.1
642,195 - Sama_0521 0.66 +0.3
642,195 - Sama_0521 0.66 -0.3
642,204 + Sama_0521 0.66 -1.0
642,204 + Sama_0521 0.66 -0.6
642,204 + Sama_0521 0.66 +0.7
642,204 + Sama_0521 0.66 +0.2
642,205 - Sama_0521 0.66 +0.6
642,205 - Sama_0521 0.66 -0.7
642,213 + Sama_0521 0.67 -0.1
642,214 - Sama_0521 0.67 -0.2
642,243 - Sama_0521 0.68 -0.1
642,243 - Sama_0521 0.68 -0.3
642,329 + Sama_0521 0.72 -0.4
642,329 + Sama_0521 0.72 +0.3
642,330 - Sama_0521 0.72 -0.3
642,358 - Sama_0521 0.73 -0.6
642,369 - Sama_0521 0.73 +2.7
642,392 - Sama_0521 0.74 -0.8
642,392 - Sama_0521 0.74 -1.5
642,443 + Sama_0521 0.77 +0.5
642,444 - Sama_0521 0.77 -0.2
642,444 - Sama_0521 0.77 +0.5
642,444 - Sama_0521 0.77 +0.3
642,444 - Sama_0521 0.77 -1.4
642,444 - Sama_0521 0.77 -0.5
642,524 + Sama_0521 0.80 +1.2
642,525 - Sama_0521 0.80 -0.0
642,525 - Sama_0521 0.80 +1.1
642,548 - Sama_0521 0.81 +0.5
642,548 - Sama_0521 0.81 -0.0
642,548 - Sama_0521 0.81 +1.0
642,548 - Sama_0521 0.81 +1.6
642,548 - Sama_0521 0.81 -1.9
642,548 - Sama_0521 0.81 +0.7
642,594 + Sama_0521 0.83 -0.9
642,594 + Sama_0521 0.83 +0.7
642,594 + Sama_0521 0.83 +0.3
642,594 + Sama_0521 0.83 +1.2
642,594 + Sama_0521 0.83 -0.3
642,594 + Sama_0521 0.83 +0.7
642,595 - Sama_0521 0.83 +0.4
642,595 - Sama_0521 0.83 -0.6
642,595 - Sama_0521 0.83 +1.1
642,595 - Sama_0521 0.83 +0.9
642,687 + Sama_0521 0.87 -0.0
642,687 + Sama_0521 0.87 +0.1
642,690 + Sama_0521 0.87 -0.5
642,690 + Sama_0521 0.87 +0.0
642,690 + Sama_0521 0.87 -0.3
642,691 - Sama_0521 0.88 +1.6
642,691 - Sama_0521 0.88 -0.4
642,691 - Sama_0521 0.88 -0.2
642,693 + Sama_0521 0.88 +0.3
642,705 + Sama_0521 0.88 -1.6
642,705 + Sama_0521 0.88 +0.3
642,705 + Sama_0521 0.88 +0.4
642,706 - Sama_0521 0.88 +0.7
642,777 + -0.6
642,837 + -0.0
642,837 + +0.3
642,837 + +0.9
642,837 + +0.1
642,837 + -0.4
642,837 + +1.1
642,838 - -2.1
642,838 - -1.2
642,838 - -1.6
642,838 - +1.5
642,838 - +0.5
642,838 - +0.2
642,838 - +1.2
642,838 - +0.7
642,838 - -0.6
642,848 + -0.7
642,849 - +1.3
642,852 + -0.2
642,852 + -0.2
642,852 + -0.1
642,852 + -0.7
642,852 + -1.5
642,852 + +0.4
642,852 + -1.3
642,852 + +0.1
642,853 - -0.3
642,853 - -1.3
642,853 - -0.1
642,853 - +0.8
642,862 + -0.3
642,885 + +0.9
642,885 + -0.3
642,886 - -0.1
642,886 - -0.5
642,917 - -1.3
642,917 - -0.3
642,917 - -0.1
642,958 + +0.4
642,959 - -0.1
642,963 + +0.3
642,979 + -0.7
643,073 - +0.8
643,143 + -0.2
643,144 - -0.6
643,144 - -0.9
643,158 + -0.8
643,197 + Sama_0522 0.14 -0.9
643,198 - Sama_0522 0.14 +1.2
643,279 + Sama_0522 0.26 +0.7
643,279 + Sama_0522 0.26 -0.1
643,280 - Sama_0522 0.26 +1.7
643,280 - Sama_0522 0.26 -0.3
643,309 - Sama_0522 0.31 -0.1
643,341 + Sama_0522 0.35 +0.4
643,342 - Sama_0522 0.36 +0.3
643,348 + Sama_0522 0.36 -0.3
643,348 + Sama_0522 0.36 -0.1
643,348 + Sama_0522 0.36 +0.2
643,390 + Sama_0522 0.43 -3.1
643,390 + Sama_0522 0.43 +0.9
643,390 + Sama_0522 0.43 -0.1
643,391 - Sama_0522 0.43 +0.8
643,391 - Sama_0522 0.43 +1.9
643,391 - Sama_0522 0.43 -0.5
643,393 + Sama_0522 0.43 +0.2
643,393 + Sama_0522 0.43 -0.0
643,415 - Sama_0522 0.46 +1.0
643,443 + Sama_0522 0.51 +0.1
643,444 - Sama_0522 0.51 +0.2
643,455 + Sama_0522 0.52 -0.2
643,456 - Sama_0522 0.53 +0.5
643,501 + Sama_0522 0.59 +0.4
643,501 + Sama_0522 0.59 -1.2
643,501 + Sama_0522 0.59 -0.0
643,501 + Sama_0522 0.59 -0.2
643,501 + Sama_0522 0.59 -0.7
643,501 + Sama_0522 0.59 -0.1
643,502 - Sama_0522 0.59 -1.1
643,502 - Sama_0522 0.59 -2.1
643,502 - Sama_0522 0.59 -0.2
643,577 + Sama_0522 0.71 +0.2
643,577 + Sama_0522 0.71 +0.1
643,577 + Sama_0522 0.71 -1.1
643,578 - Sama_0522 0.71 -0.7
643,578 - Sama_0522 0.71 -1.2
643,578 - Sama_0522 0.71 +0.4
643,578 - Sama_0522 0.71 -0.3
643,581 + Sama_0522 0.71 +0.0
643,612 + Sama_0522 0.76 +0.1
643,612 + Sama_0522 0.76 -1.6
643,612 + Sama_0522 0.76 +0.6
643,612 + Sama_0522 0.76 -0.4
643,612 + Sama_0522 0.76 -0.1
643,613 - Sama_0522 0.76 -0.3
643,613 - Sama_0522 0.76 +1.0
643,613 - Sama_0522 0.76 -1.3
643,613 - Sama_0522 0.76 -0.3
643,615 + Sama_0522 0.76 -0.6
643,615 + Sama_0522 0.76 +1.1
643,615 + Sama_0522 0.76 -0.5
643,616 - Sama_0522 0.76 -1.5
643,616 - Sama_0522 0.76 +1.9
643,629 - Sama_0522 0.78 -1.2
643,629 - Sama_0522 0.78 -0.9
643,639 + Sama_0522 0.80 -1.4
643,697 + Sama_0522 0.88 -0.0
643,697 + Sama_0522 0.88 -0.6
643,697 + Sama_0522 0.88 -0.9
643,698 - Sama_0522 0.89 +0.7
643,777 - +1.3
643,820 + -0.2
643,920 - +0.7
643,920 - -0.0
643,931 + -0.9
643,932 - -0.7
643,932 - -0.1
644,114 - +0.3
644,141 + -0.3
644,141 + +1.0
644,142 - -0.7
644,142 - -1.2
644,142 - -0.6
644,142 - -0.6
644,142 - +0.9
644,142 - +0.2
644,145 + -0.2
644,146 - +0.1
644,146 - +0.3
644,174 + +0.2
644,174 + +0.2
644,175 - -0.4
644,175 - -1.3
644,191 - +0.2
644,195 + -0.3
644,195 + -1.4
644,195 + +1.1
644,195 + -0.1
644,196 - -0.5
644,196 - -1.2
644,196 - +0.6
644,196 - +1.5
644,196 - -0.4
644,196 - +1.8
644,196 - +0.3
644,196 - +0.2
644,196 - +0.4
644,196 - -0.3
644,196 - +1.0
644,196 - -0.3
644,232 + +0.5
644,233 - +0.1
644,233 - +0.7
644,233 - -0.1
644,271 - Sama_0523 0.10 -0.1
644,286 + Sama_0523 0.11 +1.3
644,287 - Sama_0523 0.11 -1.0
644,287 - Sama_0523 0.11 -1.6
644,353 - Sama_0523 0.13 +0.1
644,398 + Sama_0523 0.14 +0.1
644,464 - Sama_0523 0.16 +0.2
644,541 - Sama_0523 0.18 +1.6
644,547 + Sama_0523 0.18 +0.5
644,547 + Sama_0523 0.18 -0.2
644,548 - Sama_0523 0.18 +0.4
644,592 + Sama_0523 0.19 -0.3
644,593 - Sama_0523 0.19 +1.2
644,603 + Sama_0523 0.20 +1.1
644,604 - Sama_0523 0.20 +0.5
644,621 + Sama_0523 0.20 +0.1
644,622 - Sama_0523 0.20 +0.1
644,622 - Sama_0523 0.20 +0.2
644,647 - Sama_0523 0.21 -2.7
644,647 - Sama_0523 0.21 -2.6
644,693 - Sama_0523 0.22 -1.7
644,693 - Sama_0523 0.22 +0.5
644,727 - Sama_0523 0.23 +0.6
644,754 + Sama_0523 0.24 -0.3
644,755 - Sama_0523 0.24 +0.6

Or see this region's nucleotide sequence