Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0511 and Sama_0512 are separated by 54 nucleotides Sama_0512 and Sama_0513 are separated by 202 nucleotides
Sama_0511: Sama_0511 - alkyl sulfatase (RefSeq), at 626,443 to 628,404
_0511
Sama_0512: Sama_0512 - ATP-dependent RNA helicase DeaD (RefSeq), at 628,459 to 630,372
_0512
Sama_0513: Sama_0513 - peptidase M28 (RefSeq), at 630,575 to 631,600
_0513
Position (kb) 628
629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.492 kb on + strand, within Sama_0511 at 627.492 kb on + strand, within Sama_0511 at 627.492 kb on + strand, within Sama_0511 at 627.492 kb on + strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.521 kb on - strand, within Sama_0511 at 627.540 kb on + strand, within Sama_0511 at 627.540 kb on + strand, within Sama_0511 at 627.545 kb on - strand, within Sama_0511 at 627.589 kb on + strand, within Sama_0511 at 627.590 kb on - strand, within Sama_0511 at 627.619 kb on - strand, within Sama_0511 at 627.619 kb on - strand, within Sama_0511 at 627.619 kb on - strand, within Sama_0511 at 627.642 kb on + strand, within Sama_0511 at 627.642 kb on + strand, within Sama_0511 at 627.642 kb on + strand, within Sama_0511 at 627.643 kb on - strand, within Sama_0511 at 627.643 kb on - strand, within Sama_0511 at 627.651 kb on + strand, within Sama_0511 at 627.651 kb on + strand, within Sama_0511 at 627.661 kb on + strand, within Sama_0511 at 627.664 kb on + strand, within Sama_0511 at 627.664 kb on + strand, within Sama_0511 at 627.665 kb on - strand, within Sama_0511 at 627.665 kb on - strand, within Sama_0511 at 627.674 kb on + strand, within Sama_0511 at 627.674 kb on + strand, within Sama_0511 at 627.674 kb on + strand, within Sama_0511 at 627.675 kb on - strand, within Sama_0511 at 627.675 kb on - strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.718 kb on + strand, within Sama_0511 at 627.718 kb on + strand, within Sama_0511 at 627.718 kb on + strand, within Sama_0511 at 627.745 kb on - strand, within Sama_0511 at 627.775 kb on + strand, within Sama_0511 at 627.784 kb on + strand, within Sama_0511 at 627.784 kb on + strand, within Sama_0511 at 627.784 kb on + strand, within Sama_0511 at 627.785 kb on - strand, within Sama_0511 at 627.785 kb on - strand, within Sama_0511 at 627.785 kb on - strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.924 kb on + strand, within Sama_0511 at 627.924 kb on + strand, within Sama_0511 at 627.924 kb on + strand, within Sama_0511 at 628.085 kb on - strand, within Sama_0511 at 628.085 kb on - strand, within Sama_0511 at 628.122 kb on + strand, within Sama_0511 at 628.122 kb on + strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.201 kb on + strand, within Sama_0511 at 628.248 kb on + strand at 628.248 kb on + strand at 628.249 kb on - strand at 628.266 kb on + strand at 628.267 kb on - strand at 628.267 kb on - strand at 628.317 kb on - strand at 628.323 kb on + strand at 628.359 kb on + strand at 628.368 kb on + strand at 628.386 kb on + strand at 628.386 kb on + strand at 628.386 kb on + strand at 628.402 kb on + strand at 628.402 kb on + strand at 628.402 kb on + strand at 628.403 kb on - strand at 628.403 kb on - strand at 628.403 kb on - strand at 628.421 kb on - strand at 628.451 kb on - strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.611 kb on + strand at 628.611 kb on + strand at 628.611 kb on + strand at 628.612 kb on - strand at 628.612 kb on - strand at 628.612 kb on - strand at 628.612 kb on - strand at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.702 kb on + strand, within Sama_0512 at 628.703 kb on - strand, within Sama_0512 at 628.703 kb on - strand, within Sama_0512 at 628.730 kb on - strand, within Sama_0512 at 628.769 kb on - strand, within Sama_0512 at 628.769 kb on - strand, within Sama_0512 at 628.778 kb on + strand, within Sama_0512 at 628.799 kb on + strand, within Sama_0512 at 628.800 kb on - strand, within Sama_0512 at 628.886 kb on + strand, within Sama_0512 at 628.886 kb on + strand, within Sama_0512 at 628.887 kb on - strand, within Sama_0512 at 629.121 kb on + strand, within Sama_0512 at 629.167 kb on - strand, within Sama_0512 at 629.271 kb on + strand, within Sama_0512 at 629.272 kb on - strand, within Sama_0512 at 629.415 kb on - strand, within Sama_0512 at 629.565 kb on - strand, within Sama_0512 at 629.565 kb on - strand, within Sama_0512 at 629.613 kb on + strand, within Sama_0512 at 629.631 kb on + strand, within Sama_0512 at 629.663 kb on - strand, within Sama_0512 at 629.989 kb on + strand, within Sama_0512 at 629.990 kb on - strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.027 kb on - strand, within Sama_0512 at 630.027 kb on - strand, within Sama_0512 at 630.044 kb on + strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.048 kb on + strand, within Sama_0512 at 630.049 kb on - strand, within Sama_0512 at 630.049 kb on - strand, within Sama_0512 at 630.055 kb on + strand, within Sama_0512 at 630.056 kb on - strand, within Sama_0512 at 630.056 kb on - strand, within Sama_0512 at 630.109 kb on + strand, within Sama_0512 at 630.214 kb on - strand at 630.385 kb on - strand at 630.416 kb on + strand at 630.614 kb on + strand at 630.614 kb on + strand at 630.615 kb on - strand at 630.621 kb on + strand at 630.622 kb on - strand at 630.622 kb on - strand at 630.622 kb on - strand at 630.623 kb on + strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.674 kb on - strand at 630.691 kb on - strand, within Sama_0513 at 630.691 kb on - strand, within Sama_0513 at 630.717 kb on + strand, within Sama_0513 at 630.739 kb on + strand, within Sama_0513 at 630.751 kb on - strand, within Sama_0513 at 630.771 kb on + strand, within Sama_0513 at 630.771 kb on + strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.898 kb on - strand, within Sama_0513 at 630.906 kb on + strand, within Sama_0513 at 630.906 kb on + strand, within Sama_0513 at 630.907 kb on - strand, within Sama_0513 at 630.932 kb on - strand, within Sama_0513 at 630.959 kb on + strand, within Sama_0513 at 630.959 kb on + strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 631.003 kb on - strand, within Sama_0513 at 631.003 kb on - strand, within Sama_0513 at 631.171 kb on - strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.182 kb on - strand, within Sama_0513 at 631.182 kb on - strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.227 kb on - strand, within Sama_0513 at 631.227 kb on - strand, within Sama_0513
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 627,492 + Sama_0511 0.53 +0.0 627,492 + Sama_0511 0.53 -1.1 627,492 + Sama_0511 0.53 +1.0 627,492 + Sama_0511 0.53 +0.2 627,493 - Sama_0511 0.54 +0.6 627,493 - Sama_0511 0.54 +0.1 627,493 - Sama_0511 0.54 -0.7 627,493 - Sama_0511 0.54 +0.3 627,493 - Sama_0511 0.54 -0.1 627,521 - Sama_0511 0.55 +0.9 627,540 + Sama_0511 0.56 +0.0 627,540 + Sama_0511 0.56 +0.2 627,545 - Sama_0511 0.56 +0.1 627,589 + Sama_0511 0.58 -0.1 627,590 - Sama_0511 0.58 -0.6 627,619 - Sama_0511 0.60 -1.6 627,619 - Sama_0511 0.60 +0.6 627,619 - Sama_0511 0.60 +1.2 627,642 + Sama_0511 0.61 +1.7 627,642 + Sama_0511 0.61 +1.3 627,642 + Sama_0511 0.61 -0.9 627,643 - Sama_0511 0.61 +0.3 627,643 - Sama_0511 0.61 -1.0 627,651 + Sama_0511 0.62 -0.6 627,651 + Sama_0511 0.62 -0.9 627,661 + Sama_0511 0.62 -2.9 627,664 + Sama_0511 0.62 +0.1 627,664 + Sama_0511 0.62 +1.5 627,665 - Sama_0511 0.62 +0.1 627,665 - Sama_0511 0.62 -1.9 627,674 + Sama_0511 0.63 +0.2 627,674 + Sama_0511 0.63 +0.4 627,674 + Sama_0511 0.63 -1.9 627,675 - Sama_0511 0.63 -2.1 627,675 - Sama_0511 0.63 -0.2 627,706 + Sama_0511 0.64 -0.5 627,706 + Sama_0511 0.64 +1.0 627,706 + Sama_0511 0.64 -0.3 627,706 + Sama_0511 0.64 -0.4 627,706 + Sama_0511 0.64 -0.1 627,706 + Sama_0511 0.64 +0.3 627,707 - Sama_0511 0.64 -1.4 627,707 - Sama_0511 0.64 +0.6 627,707 - Sama_0511 0.64 -0.9 627,707 - Sama_0511 0.64 +1.5 627,707 - Sama_0511 0.64 +2.1 627,707 - Sama_0511 0.64 -0.2 627,707 - Sama_0511 0.64 -1.9 627,707 - Sama_0511 0.64 -0.5 627,718 + Sama_0511 0.65 -0.1 627,718 + Sama_0511 0.65 -0.1 627,718 + Sama_0511 0.65 -0.0 627,745 - Sama_0511 0.66 -0.7 627,775 + Sama_0511 0.68 -1.1 627,784 + Sama_0511 0.68 +0.2 627,784 + Sama_0511 0.68 -1.1 627,784 + Sama_0511 0.68 -0.6 627,785 - Sama_0511 0.68 +0.4 627,785 - Sama_0511 0.68 -0.1 627,785 - Sama_0511 0.68 -0.3 627,878 + Sama_0511 0.73 -0.3 627,878 + Sama_0511 0.73 -0.1 627,878 + Sama_0511 0.73 -0.3 627,878 + Sama_0511 0.73 +0.2 627,924 + Sama_0511 0.75 +1.5 627,924 + Sama_0511 0.75 -0.7 627,924 + Sama_0511 0.75 +0.9 628,085 - Sama_0511 0.84 +0.4 628,085 - Sama_0511 0.84 +0.6 628,122 + Sama_0511 0.86 -0.0 628,122 + Sama_0511 0.86 +0.3 628,123 - Sama_0511 0.86 +0.6 628,123 - Sama_0511 0.86 +0.7 628,123 - Sama_0511 0.86 +1.0 628,123 - Sama_0511 0.86 +0.3 628,123 - Sama_0511 0.86 +0.6 628,201 + Sama_0511 0.90 -0.5 628,248 + +0.5 628,248 + +0.5 628,249 - +1.0 628,266 + -0.0 628,267 - -2.1 628,267 - +1.7 628,317 - +0.2 628,323 + -0.4 628,359 + -0.7 628,368 + -0.4 628,386 + +0.1 628,386 + -0.6 628,386 + +1.0 628,402 + -0.2 628,402 + -0.0 628,402 + -0.3 628,403 - -1.1 628,403 - +0.0 628,403 - -0.4 628,421 - +0.2 628,451 - -0.6 628,575 + -1.2 628,575 + +0.4 628,575 + +0.3 628,576 - +0.3 628,576 - +0.8 628,611 + -1.2 628,611 + +0.4 628,611 + -0.9 628,612 - -0.4 628,612 - -1.9 628,612 - -1.9 628,612 - -0.6 628,672 + Sama_0512 0.11 -0.7 628,672 + Sama_0512 0.11 -1.4 628,672 + Sama_0512 0.11 -0.9 628,672 + Sama_0512 0.11 +0.7 628,672 + Sama_0512 0.11 +0.5 628,672 + Sama_0512 0.11 -0.7 628,673 - Sama_0512 0.11 -1.1 628,673 - Sama_0512 0.11 +0.7 628,673 - Sama_0512 0.11 -0.5 628,673 - Sama_0512 0.11 -2.6 628,673 - Sama_0512 0.11 -0.4 628,673 - Sama_0512 0.11 -0.4 628,673 - Sama_0512 0.11 -0.5 628,673 - Sama_0512 0.11 +1.0 628,702 + Sama_0512 0.13 -1.1 628,703 - Sama_0512 0.13 -1.2 628,703 - Sama_0512 0.13 -2.1 628,730 - Sama_0512 0.14 -0.2 628,769 - Sama_0512 0.16 -0.6 628,769 - Sama_0512 0.16 -1.5 628,778 + Sama_0512 0.17 +1.3 628,799 + Sama_0512 0.18 -1.3 628,800 - Sama_0512 0.18 -2.7 628,886 + Sama_0512 0.22 -1.6 628,886 + Sama_0512 0.22 -0.9 628,887 - Sama_0512 0.22 -0.3 629,121 + Sama_0512 0.35 -1.6 629,167 - Sama_0512 0.37 -0.6 629,271 + Sama_0512 0.42 -0.3 629,272 - Sama_0512 0.42 -0.0 629,415 - Sama_0512 0.50 -1.6 629,565 - Sama_0512 0.58 -0.1 629,565 - Sama_0512 0.58 -0.9 629,613 + Sama_0512 0.60 -1.7 629,631 + Sama_0512 0.61 +0.7 629,663 - Sama_0512 0.63 -0.9 629,989 + Sama_0512 0.80 -0.0 629,990 - Sama_0512 0.80 -1.0 630,026 + Sama_0512 0.82 -2.5 630,026 + Sama_0512 0.82 -0.9 630,026 + Sama_0512 0.82 +1.1 630,027 - Sama_0512 0.82 -1.5 630,027 - Sama_0512 0.82 -0.3 630,044 + Sama_0512 0.83 -1.6 630,045 - Sama_0512 0.83 -1.0 630,045 - Sama_0512 0.83 -1.6 630,045 - Sama_0512 0.83 -1.1 630,045 - Sama_0512 0.83 -0.9 630,048 + Sama_0512 0.83 -2.4 630,049 - Sama_0512 0.83 -1.3 630,049 - Sama_0512 0.83 -1.3 630,055 + Sama_0512 0.83 -0.9 630,056 - Sama_0512 0.83 -1.1 630,056 - Sama_0512 0.83 -3.1 630,109 + Sama_0512 0.86 -2.1 630,214 - -1.9 630,385 - -0.7 630,416 + -1.5 630,614 + -0.4 630,614 + -1.9 630,615 - +0.7 630,621 + -0.5 630,622 - -0.7 630,622 - +0.7 630,622 - -0.6 630,623 + -0.1 630,633 - -0.3 630,633 - -1.3 630,633 - +1.3 630,633 - -0.5 630,633 - -0.6 630,674 - -0.4 630,691 - Sama_0513 0.11 +1.0 630,691 - Sama_0513 0.11 -0.5 630,717 + Sama_0513 0.14 -0.1 630,739 + Sama_0513 0.16 -1.2 630,751 - Sama_0513 0.17 -2.7 630,771 + Sama_0513 0.19 +0.4 630,771 + Sama_0513 0.19 -0.4 630,772 - Sama_0513 0.19 -1.3 630,772 - Sama_0513 0.19 -0.1 630,772 - Sama_0513 0.19 -1.1 630,897 + Sama_0513 0.31 +0.7 630,897 + Sama_0513 0.31 +0.3 630,897 + Sama_0513 0.31 -0.1 630,897 + Sama_0513 0.31 +0.7 630,897 + Sama_0513 0.31 -0.3 630,897 + Sama_0513 0.31 -0.1 630,898 - Sama_0513 0.31 -0.6 630,906 + Sama_0513 0.32 -0.7 630,906 + Sama_0513 0.32 +1.7 630,907 - Sama_0513 0.32 -0.5 630,932 - Sama_0513 0.35 +0.0 630,959 + Sama_0513 0.37 -0.2 630,959 + Sama_0513 0.37 +0.4 630,960 - Sama_0513 0.38 -2.3 630,960 - Sama_0513 0.38 +0.5 630,960 - Sama_0513 0.38 +0.1 630,960 - Sama_0513 0.38 +0.7 630,960 - Sama_0513 0.38 -0.7 631,003 - Sama_0513 0.42 -0.3 631,003 - Sama_0513 0.42 +0.4 631,171 - Sama_0513 0.58 +1.5 631,181 + Sama_0513 0.59 -0.2 631,181 + Sama_0513 0.59 -0.6 631,181 + Sama_0513 0.59 +0.0 631,181 + Sama_0513 0.59 -0.1 631,182 - Sama_0513 0.59 -1.2 631,182 - Sama_0513 0.59 +0.8 631,226 + Sama_0513 0.63 -1.2 631,226 + Sama_0513 0.63 +0.2 631,226 + Sama_0513 0.63 -0.8 631,226 + Sama_0513 0.63 +1.7 631,226 + Sama_0513 0.63 -0.0 631,226 + Sama_0513 0.63 +0.6 631,226 + Sama_0513 0.63 +0.6 631,226 + Sama_0513 0.63 -1.3 631,227 - Sama_0513 0.64 +0.1 631,227 - Sama_0513 0.64 -0.1
Or see this region's nucleotide sequence