Strain Fitness in Shewanella amazonensis SB2B around Sama_0125

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
137,485	+		Sama_0124	0.16	+0.2
137,498	+		Sama_0124	0.17	+0.0
137,498	+		Sama_0124	0.17	-0.0
137,498	+		Sama_0124	0.17	-0.1
137,498	+		Sama_0124	0.17	+0.1
137,499	-		Sama_0124	0.17	+0.9
137,499	-		Sama_0124	0.17	-0.7
137,499	-		Sama_0124	0.17	+0.0
137,515	+		Sama_0124	0.19	+1.1
137,516	-		Sama_0124	0.19	+0.1
137,575	+		Sama_0124	0.27	+1.6
137,575	+		Sama_0124	0.27	+1.0
137,575	+		Sama_0124	0.27	+0.2
137,575	+		Sama_0124	0.27	-0.4
137,575	+		Sama_0124	0.27	-0.3
137,575	+		Sama_0124	0.27	-0.8
137,576	-		Sama_0124	0.27	-0.4
137,576	-		Sama_0124	0.27	+0.3
137,576	-		Sama_0124	0.27	+0.9
137,584	+		Sama_0124	0.28	+0.2
137,584	+		Sama_0124	0.28	+1.7
137,584	+		Sama_0124	0.28	+0.5
137,584	+		Sama_0124	0.28	-0.3
137,584	+		Sama_0124	0.28	+0.2
137,584	+		Sama_0124	0.28	-0.1
137,584	+		Sama_0124	0.28	+0.6
137,584	+		Sama_0124	0.28	+0.1
137,584	+		Sama_0124	0.28	+1.7
137,584	+		Sama_0124	0.28	-1.2
137,584	+		Sama_0124	0.28	+1.8
137,584	+		Sama_0124	0.28	+0.0
137,584	+		Sama_0124	0.28	-1.2
137,584	+		Sama_0124	0.28	+1.2
137,584	+		Sama_0124	0.28	-0.6
137,585	-		Sama_0124	0.28	+1.3
137,585	-		Sama_0124	0.28	+0.9
137,585	-		Sama_0124	0.28	-0.1
137,585	-		Sama_0124	0.28	-0.5
137,585	-		Sama_0124	0.28	+0.6
137,585	-		Sama_0124	0.28	-1.4
137,585	-		Sama_0124	0.28	+0.2
137,585	-		Sama_0124	0.28	+0.3
137,585	-		Sama_0124	0.28	+0.5
137,585	-		Sama_0124	0.28	+0.8
137,585	-		Sama_0124	0.28	+0.4
137,585	-		Sama_0124	0.28	-1.0
137,585	-		Sama_0124	0.28	+1.4
137,588	+		Sama_0124	0.28	+0.7
137,588	+		Sama_0124	0.28	-0.1
137,608	+		Sama_0124	0.31	+0.0
137,608	+		Sama_0124	0.31	-0.2
137,608	+		Sama_0124	0.31	+0.9
137,609	-		Sama_0124	0.31	-0.2
137,609	-		Sama_0124	0.31	-0.7
137,609	-		Sama_0124	0.31	-0.5
137,609	-		Sama_0124	0.31	-0.8
137,642	+		Sama_0124	0.35	-0.5
137,643	-		Sama_0124	0.35	-1.7
137,643	-		Sama_0124	0.35	+0.6
137,643	-		Sama_0124	0.35	+0.2
137,643	-		Sama_0124	0.35	-0.1
137,668	+		Sama_0124	0.38	-0.8
137,669	-		Sama_0124	0.38	-0.0
137,688	+		Sama_0124	0.41	+0.4
137,688	+		Sama_0124	0.41	-0.1
137,688	+		Sama_0124	0.41	-0.6
137,688	+		Sama_0124	0.41	+0.3
137,689	-		Sama_0124	0.41	+0.7
137,689	-		Sama_0124	0.41	-1.2
137,689	-		Sama_0124	0.41	+0.8
137,689	-		Sama_0124	0.41	-1.4
137,689	-		Sama_0124	0.41	-0.6
137,689	-		Sama_0124	0.41	-1.3
137,689	-		Sama_0124	0.41	-0.0
137,753	+		Sama_0124	0.49	-0.1
137,760	+		Sama_0124	0.49	+0.5
137,865	-		Sama_0124	0.62	-0.5
137,887	+		Sama_0124	0.65	+0.9
137,887	+		Sama_0124	0.65	+2.3
137,888	-		Sama_0124	0.65	+0.1
138,000	+		Sama_0124	0.79	-0.2
138,001	-		Sama_0124	0.79	+0.7
138,001	-		Sama_0124	0.79	+0.0
138,001	-		Sama_0124	0.79	+0.3
138,007	+		Sama_0124	0.80	+0.3
138,007	+		Sama_0124	0.80	-1.3
138,087	-		Sama_0124	0.90	+0.3
138,087	-		Sama_0124	0.90	+0.1
138,087	-		Sama_0124	0.90	+0.1
138,113	+				+0.9
138,113	+				-1.6
138,113	+				-0.9
138,113	+				+0.1
138,113	+				+1.2
138,113	+				-0.6
138,114	-				+0.1
138,114	-				+0.1
138,114	-				-0.4
138,116	+				+0.1
138,116	+				-0.1
138,116	+				+3.7
138,116	+				+0.9
138,117	-				+0.6
138,117	-				+1.0
138,117	-				-0.1
138,117	-				+0.4
138,152	+				+1.1
138,152	+				-0.9
138,152	+				+0.2
138,152	+				+1.4
138,152	+				+1.9
138,153	-				-0.2
138,153	-				+0.6
138,153	-				+0.0
138,153	-				-0.7
138,153	-				-0.6
138,153	-				-0.1
138,153	-				-0.5
138,187	+				-1.7
138,188	-				-2.3
138,188	-				+0.1
138,203	+				+1.0
138,232	+				-0.4
138,233	-				-0.2
138,233	-				-1.9
138,233	-				+0.1
138,240	+				-0.6
138,240	+				-0.6
138,241	-				-0.4
138,244	+				-0.8
138,244	+				-1.1
138,244	+				-0.1
138,244	+				-1.1
138,244	+				+0.1
138,244	+				-0.9
138,245	-				-0.2
138,247	+				-2.4
138,248	-				+0.3
138,248	-				-1.0
138,269	+				-0.9
138,269	+				-0.2
138,269	+				-1.0
138,269	+				-0.3
138,269	+				-1.1
138,269	+				-1.9
138,270	-				+0.1
138,270	-				+0.7
138,270	-				-2.1
138,270	-				+0.4
138,270	-				-0.4
138,270	-				-0.0
138,270	-				+0.2
138,271	+				-1.4
138,271	+				+0.3
138,272	-				-0.9
138,272	-				+0.1
138,273	+				-0.6
138,274	-				+0.9
138,274	-				+0.0
138,364	+				-1.5
138,365	-				+0.2
138,375	+				-0.0
138,375	+				-0.7
138,376	-				+0.2
138,383	+				-3.4
138,383	+				-1.9
138,383	+				-0.3
138,384	-				-0.1
138,384	-				-1.9
138,384	-				-1.1
138,384	-				-1.4
138,384	-				-1.8
138,384	-				-2.7
138,404	-				+0.4
138,404	-				-1.9
138,404	-				+1.2
138,404	-				+0.3
138,404	-				-0.2
138,404	-				+0.3
138,482	+				-0.1
138,482	+				-1.4
138,535	+				-1.0
138,536	-				+0.2
138,536	-				+0.0
138,536	-				+0.8
138,539	+				-0.5
138,539	+				+0.1
138,540	-				-0.3
138,713	+		Sama_0125	0.19	-0.1
138,714	-		Sama_0125	0.19	-0.1
138,714	-		Sama_0125	0.19	+0.7
138,714	-		Sama_0125	0.19	+0.7
138,714	-		Sama_0125	0.19	+1.1
138,729	+		Sama_0125	0.20	+0.7
138,729	+		Sama_0125	0.20	+0.7
138,729	+		Sama_0125	0.20	-0.3
138,737	+		Sama_0125	0.21	-0.2
138,814	+		Sama_0125	0.27	-2.0
138,814	+		Sama_0125	0.27	+0.1
138,814	+		Sama_0125	0.27	+0.2
138,815	-		Sama_0125	0.27	+0.9
138,815	-		Sama_0125	0.27	+0.0
138,835	+		Sama_0125	0.28	+0.0
138,836	-		Sama_0125	0.28	+0.5
138,887	+		Sama_0125	0.32	+0.8
138,887	+		Sama_0125	0.32	-0.1
138,887	+		Sama_0125	0.32	-0.7
138,888	-		Sama_0125	0.32	-0.3
139,070	+		Sama_0125	0.45	-0.2
139,070	+		Sama_0125	0.45	-1.0
139,136	+		Sama_0125	0.50	+1.2
139,244	+		Sama_0125	0.58	-0.4
139,244	+		Sama_0125	0.58	+0.3
139,245	-		Sama_0125	0.58	+0.7
139,245	-		Sama_0125	0.58	+0.9
139,245	-		Sama_0125	0.58	+0.9
139,298	+		Sama_0125	0.62	+1.6
139,380	+		Sama_0125	0.67	+0.4
139,380	+		Sama_0125	0.67	+0.1
139,381	-		Sama_0125	0.68	+0.9
139,381	-		Sama_0125	0.68	-0.7
139,408	+		Sama_0125	0.69	+0.8
139,408	+		Sama_0125	0.69	+0.6
139,408	+		Sama_0125	0.69	+1.0
139,519	+		Sama_0125	0.78	+0.3
139,519	+		Sama_0125	0.78	-0.5
139,519	+		Sama_0125	0.78	+0.2
139,520	-		Sama_0125	0.78	-0.7
139,626	-		Sama_0125	0.85	+0.9
139,702	+				+0.5
139,702	+				+0.6
139,702	+				+0.1
139,703	-				+0.5
139,703	-				+1.5
139,703	-				+0.4
139,733	+				-0.0
139,734	-				+0.9
139,734	-				+0.5
139,734	-				+0.8
139,734	-				+0.1
139,734	-				+0.1
139,790	-				+1.1
139,827	+				+0.0
139,827	+				-0.2
139,827	+				+0.3
139,827	+				-1.1
139,828	-				+0.6
139,828	-				+0.0
139,828	-				+0.3
139,828	-				+0.2
139,862	-				-0.1
139,862	-				+0.7
139,862	-				+0.5
139,862	-				+1.6
139,903	+				+0.6
139,903	+				+0.8
139,903	+				+0.1
139,903	+				-0.0
139,903	+				+0.9
139,904	-				+0.2
139,904	-				-0.1
139,904	-				+1.0
139,904	-				-0.2
139,904	-				-0.3
139,904	-				+0.5
139,904	-				+0.1
139,909	+				+0.3
139,909	+				-0.1
139,909	+				+1.1
139,909	+				+0.3
139,909	+				-0.4
139,910	-				+0.2
139,910	-				-0.3
139,910	-				+0.8
139,926	+				+0.2
139,926	+				+0.0
139,926	+				+1.5
139,927	-				-0.9
139,947	+				+1.0
139,947	+				-1.1
139,947	+				+0.7
139,948	-				-1.6
139,948	-				+1.1
139,948	-				+0.9
139,948	-				-0.9
139,951	+				-0.4
139,951	+				+0.6
139,951	+				-0.5
139,951	+				-0.1
139,951	+				+0.2
139,952	-				+0.6
139,952	-				-1.7
139,952	-				+0.8
139,961	+				+0.7
139,961	+				+1.0
139,961	+				+1.1
139,961	+				+0.9
139,961	+				+1.5
139,962	-				-0.0
139,962	-				+1.3
139,969	+				-0.6
139,970	-				-0.0
139,976	+				+0.5
139,976	+				+1.7
139,976	+				-0.4
139,977	-				+0.3
139,977	-				+0.4
139,996	+				-0.3
139,996	+				-0.3
139,996	+				+0.2
139,997	-				+2.5
139,997	-				+0.3
140,004	+				+0.1
140,004	+				+0.1
140,116	+		Sama_0126	0.13	-0.5
140,177	-		Sama_0126	0.16	+0.7
140,199	+		Sama_0126	0.17	+0.6
140,209	+		Sama_0126	0.18	+0.9
140,209	+		Sama_0126	0.18	+0.4
140,209	+		Sama_0126	0.18	+0.9
140,210	-		Sama_0126	0.18	-0.6
140,262	+		Sama_0126	0.20	+0.5
140,263	-		Sama_0126	0.20	-0.4
140,281	+		Sama_0126	0.21	+0.9
140,281	+		Sama_0126	0.21	+1.7
140,457	+		Sama_0126	0.29	+0.7
140,457	+		Sama_0126	0.29	+0.2
140,457	+		Sama_0126	0.29	+0.6
140,458	-		Sama_0126	0.29	-0.1
140,465	+		Sama_0126	0.30	+0.8
140,465	+		Sama_0126	0.30	+1.0
140,465	+		Sama_0126	0.30	+0.9
140,465	+		Sama_0126	0.30	-1.9
140,465	+		Sama_0126	0.30	+0.6
140,503	+		Sama_0126	0.32	-0.0
140,504	-		Sama_0126	0.32	+0.2
140,531	+		Sama_0126	0.33	+0.9
140,531	+		Sama_0126	0.33	-0.3
140,531	+		Sama_0126	0.33	+0.2
140,532	-		Sama_0126	0.33	+1.1
140,532	-		Sama_0126	0.33	-0.1
140,532	-		Sama_0126	0.33	+0.3
140,532	-		Sama_0126	0.33	+0.7
140,542	+		Sama_0126	0.33	+1.1
140,542	+		Sama_0126	0.33	+0.9
140,542	+		Sama_0126	0.33	-1.1
140,542	+		Sama_0126	0.33	-0.3
140,542	+		Sama_0126	0.33	-1.4
140,543	-		Sama_0126	0.33	+0.9
140,543	-		Sama_0126	0.33	+0.9
140,543	-		Sama_0126	0.33	+1.0
140,596	+		Sama_0126	0.36	-0.2
140,596	+		Sama_0126	0.36	-0.6
140,597	-		Sama_0126	0.36	+0.7
140,670	+		Sama_0126	0.39	-0.5
140,671	-		Sama_0126	0.39	+0.3
140,683	+		Sama_0126	0.40	+0.9
140,735	+		Sama_0126	0.42	+0.2
140,749	+		Sama_0126	0.43	+0.2
140,749	+		Sama_0126	0.43	-0.3
140,749	+		Sama_0126	0.43	+1.5
140,749	+		Sama_0126	0.43	+0.2
140,750	-		Sama_0126	0.43	+0.2
140,802	+		Sama_0126	0.46	+0.7
140,802	+		Sama_0126	0.46	-0.9
140,802	+		Sama_0126	0.46	+0.2
140,802	+		Sama_0126	0.46	+2.5
140,803	-		Sama_0126	0.46	+1.0
140,803	-		Sama_0126	0.46	-0.3
140,803	-		Sama_0126	0.46	+0.7
140,803	-		Sama_0126	0.46	+1.6
140,803	-		Sama_0126	0.46	-0.3
140,804	+		Sama_0126	0.46	+0.5
140,804	+		Sama_0126	0.46	+2.0
140,804	+		Sama_0126	0.46	-0.9
140,804	+		Sama_0126	0.46	+0.9
140,804	+		Sama_0126	0.46	-0.2
140,804	+		Sama_0126	0.46	-0.4
140,804	+		Sama_0126	0.46	+0.4
140,804	+		Sama_0126	0.46	+0.4
140,804	+		Sama_0126	0.46	+0.7
140,804	+		Sama_0126	0.46	-0.0
140,804	+		Sama_0126	0.46	+0.3
140,804	+		Sama_0126	0.46	+0.7
140,804	+		Sama_0126	0.46	+0.5
140,804	+		Sama_0126	0.46	+1.4
140,804	+		Sama_0126	0.46	+0.6
140,804	+		Sama_0126	0.46	+0.6
140,804	+		Sama_0126	0.46	+0.2
140,805	-		Sama_0126	0.46	-1.3
140,805	-		Sama_0126	0.46	+0.1
140,805	-		Sama_0126	0.46	-0.7
140,805	-		Sama_0126	0.46	+1.2
140,805	-		Sama_0126	0.46	+0.7
140,805	-		Sama_0126	0.46	+0.5
140,805	-		Sama_0126	0.46	+0.1
140,805	-		Sama_0126	0.46	+0.3
140,805	-		Sama_0126	0.46	+0.3
140,805	-		Sama_0126	0.46	+0.7