Strain Fitness in Shewanella amazonensis SB2B around Sama_0010

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
9,683	+		Sama_0010	0.40	-3.4
9,684	-		Sama_0010	0.40	-0.1
9,684	-		Sama_0010	0.40	-1.6
9,684	-		Sama_0010	0.40	-2.6
9,684	-		Sama_0010	0.40	-1.2
9,685	+		Sama_0010	0.41	-1.1
9,686	-		Sama_0010	0.41	-0.6
9,717	+		Sama_0010	0.53	-1.4
9,717	+		Sama_0010	0.53	-2.1
9,718	-		Sama_0010	0.54	-2.1
9,718	-		Sama_0010	0.54	-1.4
9,718	-		Sama_0010	0.54	-2.3
9,748	+		Sama_0010	0.65	-2.6
9,748	+		Sama_0010	0.65	-1.7
9,749	-		Sama_0010	0.66	-0.1
9,749	-		Sama_0010	0.66	-2.4
9,769	+		Sama_0010	0.74	-1.1
9,773	+		Sama_0010	0.75	-2.7
9,773	+		Sama_0010	0.75	-1.7
9,774	-		Sama_0010	0.76	-0.7
9,774	-		Sama_0010	0.76	-2.9
9,774	-		Sama_0010	0.76	-0.7
9,774	-		Sama_0010	0.76	-0.7
9,790	+		Sama_0010	0.82	-2.6
9,791	-		Sama_0010	0.82	-1.2
9,835	+				-0.1
9,835	+				+2.2
9,836	-				-1.1
9,836	-				-1.9
9,836	-				-2.1
9,836	-				+0.1
10,442	+				+0.1
10,443	-				-1.4
10,455	+				+0.1
10,455	+				+0.9
10,455	+				-0.9
10,455	+				-1.9
10,477	+				-0.4
10,478	-				-2.0
10,478	-				-0.6
10,486	+				-0.3
10,487	-				+0.1
10,495	+				-1.2
10,508	+				-0.7
10,522	+				+0.4
10,522	+				+0.3
10,523	-				-2.0
10,529	+				+0.2
10,529	+				-0.1
10,529	+				+1.2
10,536	+				-1.2
10,536	+				-0.7
10,553	-				+1.5
10,553	-				-1.2
10,553	-				-0.1
10,564	-				-0.7
10,575	+				-0.1
10,576	-				+1.3
10,577	+				-0.2
10,577	+				-0.8
10,577	+				-0.5
10,577	+				-0.5
10,577	+				-1.6
10,578	-				+0.6
10,578	-				-0.7
10,578	-				-0.4
10,578	-				-0.9
10,578	-				-2.4
10,578	-				+0.9
10,578	-				-0.1
10,578	-				+0.7
10,578	-				+0.5
10,578	-				-0.1
10,596	+				-0.2
10,597	-				-1.4
10,599	+				-0.7
10,599	+				+2.5
10,599	+				-0.4
10,600	-				+0.2
10,600	-				+0.1
10,631	+				+0.6
10,631	+				+0.1
10,632	-				+0.3
10,663	-				+0.1
10,663	-				-0.1
10,663	-				-0.0
10,663	-				+0.3
10,690	+				-0.8
10,691	-				-0.4
10,691	-				-1.6
10,701	+				-0.5
10,701	+				-1.1
10,701	+				-2.9
10,702	-				-1.4