Strain Fitness in Shewanella oneidensis MR-1 around SO_t012

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntorn and tRNA-Gly-4 are separated by 200 nucleotidestRNA-Gly-4 and tRNA-Gly-3 are separated by 124 nucleotidestRNA-Gly-3 and tRNA-Gly-2 are separated by 122 nucleotidestRNA-Gly-2 and tRNA-Gly-1 are separated by 126 nucleotidestRNA-Gly-1 and SO0595 are separated by 436 nucleotides SO0592: orn - oligoribonuclease (NCBI ptt file), at 619,424 to 619,969 orn SO_t009: tRNA-Gly-4 - tRNA-Gly (RefSeq), at 620,170 to 620,245 tRNA-Gly-4 SO_t010: tRNA-Gly-3 - tRNA-Gly (RefSeq), at 620,370 to 620,445 tRNA-Gly-3 SO_t011: tRNA-Gly-2 - tRNA-Gly (RefSeq), at 620,568 to 620,643 tRNA-Gly-2 SO_t012: tRNA-Gly-1 - tRNA-Gly (RefSeq), at 620,770 to 620,845 tRNA-Gly-1 SO0595: SO0595 - hypothetical protein (NCBI ptt file), at 621,282 to 621,833 SO0595 Position (kb) 620 621Strain fitness (log2 ratio) -2 -1 0 1 2at 620.313 kb on + strandat 620.606 kb on + strand, within tRNA-Gly-2at 620.750 kb on + strandat 620.750 kb on + strandat 620.808 kb on + strand, within tRNA-Gly-1at 620.936 kb on - strandat 620.950 kb on - strandat 620.951 kb on - strandat 620.953 kb on + strandat 620.953 kb on + strandat 620.953 kb on + strandat 620.953 kb on + strandat 620.953 kb on + strandat 620.958 kb on + strandat 620.958 kb on + strandat 620.961 kb on - strandat 620.961 kb on - strandat 620.961 kb on - strandat 620.966 kb on - strandat 620.966 kb on - strandat 620.971 kb on - strandat 621.070 kb on + strandat 621.070 kb on + strandat 621.070 kb on + strandat 621.070 kb on + strandat 621.118 kb on + strandat 621.118 kb on + strandat 621.118 kb on + strandat 621.126 kb on - strandat 621.126 kb on - strandat 621.149 kb on - strandat 621.208 kb on - strandat 621.223 kb on + strandat 621.231 kb on - strandat 621.279 kb on + strandat 621.349 kb on + strand, within SO0595at 621.349 kb on + strand, within SO0595at 621.349 kb on + strand, within SO0595at 621.369 kb on - strand, within SO0595at 621.371 kb on + strand, within SO0595at 621.380 kb on - strand, within SO0595at 621.432 kb on - strand, within SO0595at 621.438 kb on + strand, within SO0595at 621.443 kb on + strand, within SO0595at 621.452 kb on - strand, within SO0595at 621.452 kb on - strand, within SO0595at 621.469 kb on - strand, within SO0595at 621.471 kb on + strand, within SO0595at 621.479 kb on - strand, within SO0595at 621.483 kb on - strand, within SO0595at 621.552 kb on + strand, within SO0595at 621.570 kb on + strand, within SO0595at 621.625 kb on - strand, within SO0595at 621.655 kb on + strand, within SO0595at 621.718 kb on - strand, within SO0595at 621.733 kb on + strand, within SO0595at 621.733 kb on + strand, within SO0595at 621.741 kb on - strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.753 kb on + strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.761 kb on - strand, within SO0595at 621.762 kb on - strand, within SO0595at 621.796 kb on + strandat 621.803 kb on + strandat 621.803 kb on - strandat 621.804 kb on - strandat 621.809 kb on - strandat 621.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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620,313 + -0.1
620,606 + tRNA-Gly-2 SO_t011 0.50 -2.0
620,750 + -0.7
620,750 + -0.7
620,808 + tRNA-Gly-1 SO_t012 0.50 -0.9
620,936 - -0.8
620,950 - -0.8
620,951 - -0.4
620,953 + -0.6
620,953 + -1.0
620,953 + +0.9
620,953 + -0.7
620,953 + -0.7
620,958 + +0.0
620,958 + +0.4
620,961 - -0.7
620,961 - -0.3
620,961 - +0.1
620,966 - -0.1
620,966 - +0.4
620,971 - -1.2
621,070 + -0.5
621,070 + +0.5
621,070 + -0.4
621,070 + +0.7
621,118 + +0.1
621,118 + -0.4
621,118 + -1.5
621,126 - +0.5
621,126 - +0.6
621,149 - -0.6
621,208 - +1.0
621,223 + +1.1
621,231 - +0.2
621,279 + -0.9
621,349 + SO0595 0.12 +0.1
621,349 + SO0595 0.12 -0.3
621,349 + SO0595 0.12 -0.3
621,369 - SO0595 0.16 -0.3
621,371 + SO0595 0.16 -0.1
621,380 - SO0595 0.18 -1.0
621,432 - SO0595 0.27 -0.0
621,438 + SO0595 0.28 +1.7
621,443 + SO0595 0.29 -0.9
621,452 - SO0595 0.31 -0.7
621,452 - SO0595 0.31 -0.2
621,469 - SO0595 0.34 +0.8
621,471 + SO0595 0.34 -0.4
621,479 - SO0595 0.36 +0.2
621,483 - SO0595 0.36 -0.3
621,552 + SO0595 0.49 -0.1
621,570 + SO0595 0.52 +0.5
621,625 - SO0595 0.62 -0.1
621,655 + SO0595 0.68 -1.3
621,718 - SO0595 0.79 +0.2
621,733 + SO0595 0.82 +0.4
621,733 + SO0595 0.82 +0.2
621,741 - SO0595 0.83 +0.3
621,753 + SO0595 0.85 +0.4
621,753 + SO0595 0.85 -0.7
621,753 + SO0595 0.85 -0.8
621,753 + SO0595 0.85 -0.5
621,753 + SO0595 0.85 -0.1
621,753 + SO0595 0.85 +0.7
621,753 + SO0595 0.85 +0.7
621,753 + SO0595 0.85 -0.9
621,753 + SO0595 0.85 -2.4
621,753 + SO0595 0.85 +0.5
621,753 + SO0595 0.85 -1.2
621,753 + SO0595 0.85 +1.8
621,753 + SO0595 0.85 -1.2
621,753 + SO0595 0.85 -0.8
621,753 + SO0595 0.85 +0.7
621,753 + SO0595 0.85 +0.6
621,753 + SO0595 0.85 -0.5
621,753 + SO0595 0.85 +0.0
621,753 + SO0595 0.85 +0.4
621,753 + SO0595 0.85 +0.9
621,753 + SO0595 0.85 -0.5
621,753 + SO0595 0.85 -0.5
621,753 + SO0595 0.85 -0.5
621,753 + SO0595 0.85 -1.9
621,753 + SO0595 0.85 +0.5
621,753 + SO0595 0.85 +1.5
621,753 + SO0595 0.85 +0.1
621,753 + SO0595 0.85 +0.3
621,761 - SO0595 0.87 -0.7
621,761 - SO0595 0.87 +1.4
621,761 - SO0595 0.87 -0.5
621,761 - SO0595 0.87 -0.1
621,761 - SO0595 0.87 -0.3
621,761 - SO0595 0.87 +0.3
621,761 - SO0595 0.87 +0.1
621,761 - SO0595 0.87 -0.5
621,761 - SO0595 0.87 +0.0
621,761 - SO0595 0.87 -0.2
621,761 - SO0595 0.87 +0.0
621,761 - SO0595 0.87 -0.2
621,761 - SO0595 0.87 +0.4
621,761 - SO0595 0.87 -0.6
621,761 - SO0595 0.87 -0.3
621,761 - SO0595 0.87 -0.5
621,761 - SO0595 0.87 -1.7
621,761 - SO0595 0.87 -0.2
621,761 - SO0595 0.87 +0.1
621,761 - SO0595 0.87 +0.8
621,761 - SO0595 0.87 +0.2
621,761 - SO0595 0.87 -0.4
621,761 - SO0595 0.87 -0.6
621,761 - SO0595 0.87 +0.5
621,761 - SO0595 0.87 +0.4
621,761 - SO0595 0.87 +0.4
621,761 - SO0595 0.87 +0.7
621,761 - SO0595 0.87 +0.3
621,761 - SO0595 0.87 +0.2
621,762 - SO0595 0.87 +0.2
621,796 + +0.3
621,803 + +0.0
621,803 - -0.3
621,804 - -0.6
621,809 - +1.0
621,811 - -0.1

Or see this region's nucleotide sequence